Wall clock time and date at job start Tue Mar 31 2020 01:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47446 * 2 1 4 4 N 1.46495 * 109.47202 * 120.00409 * 2 1 3 5 5 C 1.46500 * 119.99948 * 295.64361 * 4 2 1 6 6 C 1.50700 * 109.47097 * 269.99916 * 5 4 2 7 7 H 1.07999 * 119.99968 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99809 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00100 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 120.00292 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47272 * 89.99761 * 10 8 6 12 12 H 1.48506 * 109.47217 * 209.99905 * 10 8 6 13 13 H 1.48496 * 109.47104 * 329.99957 * 10 8 6 14 14 C 1.34773 * 120.00140 * 115.64190 * 4 2 1 15 15 O 1.21593 * 120.00075 * 187.34552 * 14 4 2 16 16 N 1.34779 * 119.99883 * 7.35031 * 14 4 2 17 17 C 1.40068 * 119.99817 * 189.19696 * 16 14 4 18 18 C 1.38844 * 120.04378 * 334.05613 * 17 16 14 19 19 C 1.38118 * 119.95324 * 180.25522 * 18 17 16 20 20 C 1.38478 * 120.04239 * 359.46849 * 19 18 17 21 21 F 1.35101 * 119.95257 * 180.28095 * 20 19 18 22 22 C 1.38464 * 120.08774 * 0.25017 * 20 19 18 23 23 C 1.38121 * 120.04827 * 0.02562 * 22 20 19 24 24 H 1.09000 * 109.47068 * 305.37869 * 1 2 3 25 25 H 1.09003 * 109.47127 * 65.37570 * 1 2 3 26 26 H 1.08991 * 109.47255 * 185.37911 * 1 2 3 27 27 H 1.09002 * 109.46901 * 240.00356 * 2 1 3 28 28 H 1.08992 * 109.47201 * 183.54766 * 3 2 1 29 29 H 1.08998 * 109.47108 * 303.55318 * 3 2 1 30 30 H 1.09000 * 109.46930 * 63.54649 * 3 2 1 31 31 H 1.09000 * 109.47144 * 30.00099 * 5 4 2 32 32 H 1.08996 * 109.47113 * 149.99504 * 5 4 2 33 33 H 0.97003 * 120.00361 * 179.97438 * 9 8 6 34 34 H 0.96999 * 120.00376 * 9.19885 * 16 14 4 35 35 H 1.07995 * 120.02357 * 359.97438 * 18 17 16 36 36 H 1.07997 * 119.97987 * 179.74865 * 19 18 17 37 37 H 1.08007 * 119.97615 * 180.02562 * 22 20 19 38 38 H 1.07995 * 120.02253 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7449 -0.1370 2.5246 6 6 2.8587 0.7988 2.9178 7 1 3.6876 0.9642 2.2456 8 6 2.8195 1.4437 4.1358 9 7 3.7917 2.2600 4.4793 10 14 1.3861 1.1570 5.2988 11 1 1.6963 0.0137 6.1943 12 1 1.1586 2.3770 6.1144 13 1 0.1639 0.8523 4.5124 14 6 2.7192 -1.8354 1.0743 15 8 3.0093 -2.4789 2.0644 16 7 3.0985 -2.2668 -0.1449 17 6 3.6545 -3.5437 -0.2942 18 6 4.3069 -4.1470 0.7727 19 6 4.8590 -5.4039 0.6219 20 6 4.7527 -6.0671 -0.5892 21 9 5.2886 -7.2989 -0.7330 22 6 4.0974 -5.4696 -1.6526 23 6 3.5488 -4.2103 -1.5075 24 1 -0.3633 0.5950 0.8379 25 1 -0.3633 0.4282 -0.9342 26 1 -0.3633 -1.0230 0.0963 27 1 1.8933 -0.5138 -0.8900 28 1 3.1282 1.4431 -0.0636 29 1 1.6257 1.9744 -0.8564 30 1 1.7296 1.9376 0.9201 31 1 0.8018 0.4091 2.5035 32 1 1.6787 -0.9482 3.2496 33 1 3.7640 2.7140 5.3360 34 1 2.9865 -1.6931 -0.9190 35 1 4.3864 -3.6318 1.7185 36 1 5.3701 -5.8718 1.4502 37 1 4.0152 -5.9886 -2.5962 38 1 3.0375 -3.7449 -2.3371 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004325262.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:40 Heat of formation + Delta-G solvation = -52.829360 kcal Electronic energy + Delta-G solvation = -21927.212133 eV Core-core repulsion = 18491.105244 eV Total energy + Delta-G solvation = -3436.106889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.80394 -41.86048 -39.71178 -37.71172 -35.82195 -34.73226 -32.70405 -32.04468 -30.78528 -29.05008 -27.95365 -24.89373 -24.22326 -23.35819 -22.76126 -20.46382 -19.59723 -19.05764 -18.53402 -18.25718 -17.05253 -16.73061 -16.55944 -16.43724 -15.77600 -15.47047 -15.14465 -14.98584 -14.52106 -14.48962 -14.29937 -13.99513 -13.86610 -13.54472 -13.48196 -13.29710 -12.92905 -12.69918 -12.39872 -12.31887 -12.16720 -11.92571 -11.75957 -11.54740 -11.42259 -10.79447 -10.74626 -10.05558 -9.55719 -8.87948 -8.29121 -6.31625 0.14189 0.29527 1.33591 1.38125 1.44984 1.63287 2.07855 2.33316 2.70789 2.85722 3.06200 3.36511 3.82772 3.89333 3.95587 4.22722 4.25274 4.30109 4.37695 4.56674 4.70807 4.86843 4.87164 4.92376 5.00294 5.02355 5.08329 5.16165 5.28086 5.30538 5.39724 5.46946 5.49631 5.59710 5.67541 5.99505 6.02402 6.31399 6.69460 6.98610 7.28181 7.54538 8.87270 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021734 B = 0.004626 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.993013 B = 6051.631999 C = 6814.436134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.129 3.871 3 C -0.152 4.152 4 N -0.603 5.603 5 C 0.241 3.759 6 C -0.519 4.519 7 H 0.035 0.965 8 C 0.013 3.987 9 N -0.945 5.945 10 Si 0.938 3.062 11 H -0.280 1.280 12 H -0.278 1.278 13 H -0.238 1.238 14 C 0.696 3.304 15 O -0.613 6.613 16 N -0.672 5.672 17 C 0.150 3.850 18 C -0.138 4.138 19 C -0.138 4.138 20 C 0.056 3.944 21 F -0.148 7.148 22 C -0.120 4.120 23 C -0.114 4.114 24 H 0.049 0.951 25 H 0.099 0.901 26 H 0.056 0.944 27 H 0.105 0.895 28 H 0.034 0.966 29 H 0.092 0.908 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.017 0.983 33 H 0.266 0.734 34 H 0.421 0.579 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.171 0.829 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.978 -10.203 -17.063 20.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.027 3.973 3 C -0.210 4.210 4 N -0.336 5.336 5 C 0.118 3.882 6 C -0.558 4.558 7 H 0.053 0.947 8 C -0.185 4.185 9 N -0.586 5.586 10 Si 0.761 3.239 11 H -0.206 1.206 12 H -0.204 1.204 13 H -0.161 1.161 14 C 0.398 3.602 15 O -0.494 6.494 16 N -0.322 5.322 17 C 0.054 3.946 18 C -0.159 4.159 19 C -0.158 4.158 20 C 0.036 3.964 21 F -0.127 7.127 22 C -0.139 4.139 23 C -0.134 4.134 24 H 0.068 0.932 25 H 0.118 0.882 26 H 0.075 0.925 27 H 0.123 0.877 28 H 0.053 0.947 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.035 0.965 33 H 0.075 0.925 34 H 0.262 0.738 35 H 0.152 0.848 36 H 0.156 0.844 37 H 0.188 0.812 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.798 -10.470 -16.214 20.153 hybrid contribution 0.215 0.356 1.065 1.144 sum -5.582 -10.114 -15.149 19.051 Atomic orbital electron populations 1.22140 0.93270 1.02308 1.03646 1.21364 0.95862 0.93738 0.86362 1.22080 1.00262 0.95796 1.02834 1.47370 1.54797 1.22695 1.08775 1.19196 0.95938 0.92776 0.80263 1.21521 1.06901 1.24789 1.02622 0.94657 1.25719 0.98786 0.94568 0.99382 1.70040 1.34618 1.30806 1.23142 0.85865 0.80818 0.77714 0.79473 1.20583 1.20384 1.16129 1.16128 0.79072 0.81688 0.83294 1.90755 1.61839 1.58377 1.38418 1.42649 1.64034 1.16178 1.09349 1.17948 0.95591 0.85374 0.95685 1.21651 0.97422 0.95992 1.00838 1.21155 1.01858 0.95346 0.97417 1.17839 1.01057 0.81714 0.95758 1.91460 1.84547 1.40298 1.96379 1.21202 0.98117 0.95503 0.99065 1.20964 1.01739 0.94144 0.96577 0.93230 0.88197 0.92486 0.87722 0.94672 0.88954 0.93311 0.93083 0.96458 0.92515 0.73774 0.84772 0.84376 0.81162 0.80874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 9.15 71.98 0.66 -2.79 16 2 C 0.13 3.50 3.22 44.99 0.14 3.64 16 3 C -0.15 -4.53 8.50 71.98 0.61 -3.92 16 4 N -0.60 -23.17 2.38 -820.06 -1.96 -25.13 16 5 C 0.24 11.28 3.58 85.63 0.31 11.58 16 6 C -0.52 -29.20 8.30 25.60 0.21 -28.99 16 7 H 0.04 2.22 7.92 -2.91 -0.02 2.20 16 8 C 0.01 0.76 5.47 84.65 0.46 1.22 16 9 N -0.95 -58.77 13.96 21.45 0.30 -58.47 16 10 Si 0.94 43.81 27.47 68.60 1.88 45.69 16 11 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 14 C 0.70 27.71 8.16 179.06 1.46 29.17 16 15 O -0.61 -29.94 12.75 -4.01 -0.05 -30.00 16 16 N -0.67 -19.43 5.20 -317.11 -1.65 -21.08 16 17 C 0.15 4.20 6.46 38.11 0.25 4.45 16 18 C -0.14 -4.60 8.85 22.39 0.20 -4.40 16 19 C -0.14 -3.90 10.02 22.30 0.22 -3.68 16 20 C 0.06 1.37 7.30 22.38 0.16 1.53 16 21 F -0.15 -3.64 17.27 44.97 0.78 -2.86 16 22 C -0.12 -2.23 10.02 22.30 0.22 -2.01 16 23 C -0.11 -2.15 9.94 22.39 0.22 -1.92 16 24 H 0.05 1.27 7.04 -2.39 -0.02 1.25 16 25 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.11 2.02 5.56 -2.39 -0.01 2.01 16 28 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 1.82 6.69 -2.39 -0.02 1.80 16 31 H 0.05 2.22 5.83 -2.39 -0.01 2.20 16 32 H 0.02 0.89 6.76 -2.39 -0.02 0.87 16 33 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 34 H 0.42 8.79 6.35 -92.71 -0.59 8.20 16 35 H 0.13 5.57 5.39 -2.91 -0.02 5.55 16 36 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 37 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 38 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -74.66 315.32 4.88 -69.77 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.44 Total: 18.18 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 5.14 Total: 3.90 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -3.31 Total: -104.68 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.05 Total: -30.00 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.78 Total: -2.86 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.69 kcal Total: -74.66 4.88 -69.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004325262.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.944 kcal (2) G-P(sol) polarization free energy of solvation -74.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds