Wall clock time and date at job start Tue Mar 31 2020 01:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47257 * 2 1 4 4 N 1.46505 * 109.46984 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99762 * 275.03312 * 4 3 2 6 6 H 1.08002 * 119.99922 * 9.29513 * 5 4 3 7 7 C 1.38804 * 120.00080 * 189.28590 * 5 4 3 8 8 N 1.31629 * 119.99708 * 25.07026 * 7 5 4 9 9 Si 1.86798 * 120.00393 * 205.06281 * 7 5 4 10 10 H 1.48501 * 109.46801 * 90.00293 * 9 7 5 11 11 H 1.48499 * 109.47320 * 210.00326 * 9 7 5 12 12 H 1.48501 * 109.47337 * 330.00566 * 9 7 5 13 13 C 1.46500 * 120.00243 * 95.03996 * 4 3 2 14 14 C 1.50702 * 109.47346 * 89.99497 * 13 4 3 15 15 O 1.21287 * 119.99693 * 0.02562 * 14 13 4 16 16 N 1.34770 * 119.99932 * 179.97438 * 14 13 4 17 17 C 1.39921 * 120.00046 * 174.84439 * 16 14 13 18 18 C 1.38908 * 120.05808 * 326.66477 * 17 16 14 19 19 C 1.38104 * 119.97896 * 179.67109 * 18 17 16 20 20 C 1.38262 * 120.09323 * 0.62465 * 19 18 17 21 21 C 1.38488 * 120.11612 * 359.67230 * 20 19 18 22 22 F 1.35107 * 119.99016 * 180.02562 * 21 20 19 23 23 C 1.38347 * 120.02100 * 0.02562 * 21 20 19 24 24 H 1.09000 * 109.46617 * 300.00320 * 1 2 3 25 25 H 1.09002 * 109.47064 * 59.99579 * 1 2 3 26 26 H 1.08994 * 109.47151 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46617 * 239.99680 * 2 1 3 28 28 H 1.08995 * 109.46879 * 120.00078 * 2 1 3 29 29 H 1.08992 * 109.47404 * 59.99932 * 3 2 1 30 30 H 1.09008 * 109.47017 * 300.00077 * 3 2 1 31 31 H 0.96998 * 119.99512 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.47134 * 210.00232 * 13 4 3 33 33 H 1.09008 * 109.46806 * 329.99864 * 13 4 3 34 34 H 0.97002 * 119.99945 * 354.84468 * 16 14 13 35 35 H 1.07998 * 120.00710 * 359.97173 * 18 17 16 36 36 H 1.07998 * 119.94816 * 180.31458 * 19 18 17 37 37 H 1.08003 * 119.93885 * 179.69843 * 20 19 18 38 38 H 1.08000 * 120.05179 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1903 1.3381 1.1804 6 1 3.6612 1.1060 2.0929 7 6 5.5647 1.5306 1.2048 8 7 6.1427 2.2667 0.2792 9 14 6.5941 0.7451 2.5512 10 1 7.0405 -0.6011 2.1112 11 1 7.7807 1.5946 2.8263 12 1 5.7796 0.6174 3.7863 13 6 4.2372 1.5540 -1.2647 14 6 4.4882 3.0075 -1.5732 15 8 4.0948 3.8658 -0.8118 16 7 5.1508 3.3537 -2.6946 17 6 5.2900 4.7033 -3.0365 18 6 4.2824 5.6074 -2.7254 19 6 4.4245 6.9404 -3.0576 20 6 5.5630 7.3744 -3.7111 21 6 6.5673 6.4753 -4.0287 22 9 7.6790 6.9023 -4.6669 23 6 6.4327 5.1401 -3.6926 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6768 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 7.1031 2.4015 0.2965 32 1 5.1895 1.0306 -1.1805 33 1 3.6477 1.1089 -2.0664 34 1 5.5311 2.6672 -3.2647 35 1 3.3902 5.2689 -2.2196 36 1 3.6430 7.6438 -2.8109 37 1 5.6693 8.4165 -3.9740 38 1 7.2158 4.4386 -3.9397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044373510.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:01 Heat of formation + Delta-G solvation = -47.459320 kcal Electronic energy + Delta-G solvation = -21898.390804 eV Core-core repulsion = 18462.516778 eV Total energy + Delta-G solvation = -3435.874027 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.88752 -41.10782 -39.19081 -37.48871 -35.30851 -34.62766 -32.45142 -31.57535 -30.75686 -28.52742 -27.29777 -24.42115 -23.83435 -23.25549 -21.86469 -21.12583 -19.24040 -18.57145 -17.85520 -17.27872 -17.03764 -16.81342 -16.52200 -16.37314 -15.88033 -15.68824 -15.08968 -14.82906 -14.63322 -14.54737 -14.05912 -13.90290 -13.43211 -13.30162 -13.10346 -12.91628 -12.60516 -12.56726 -12.28277 -12.19015 -12.03331 -12.01324 -11.78175 -11.35196 -11.12675 -10.69476 -10.30089 -9.77356 -8.98306 -8.87144 -7.90149 -5.15294 0.24130 0.28464 1.46827 1.49430 1.56470 2.21993 2.35523 2.55560 2.86691 3.26674 3.36371 3.62565 3.87317 4.10009 4.22923 4.26356 4.30945 4.43785 4.45329 4.64856 4.69226 4.79233 4.86147 4.96341 5.06714 5.13997 5.19354 5.26071 5.29260 5.36069 5.44598 5.45921 5.64038 5.68199 5.71405 6.12358 6.25243 6.80667 7.13067 7.74193 7.92068 8.25067 9.17318 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016520 B = 0.005241 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.531263 B = 5341.342646 C = 6566.023338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.130 4.130 3 C 0.150 3.850 4 N -0.590 5.590 5 C -0.250 4.250 6 H 0.070 0.930 7 C -0.048 4.048 8 N -0.917 5.917 9 Si 0.960 3.040 10 H -0.282 1.282 11 H -0.306 1.306 12 H -0.278 1.278 13 C 0.164 3.836 14 C 0.531 3.469 15 O -0.551 6.551 16 N -0.680 5.680 17 C 0.187 3.813 18 C -0.157 4.157 19 C -0.068 4.068 20 C -0.179 4.179 21 C 0.106 3.894 22 F -0.143 7.143 23 C -0.200 4.200 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.027 0.973 30 H 0.045 0.955 31 H 0.245 0.755 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.415 0.585 35 H 0.117 0.883 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.552 2.154 -10.657 11.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C 0.025 3.975 4 N -0.309 5.309 5 C -0.380 4.380 6 H 0.088 0.912 7 C -0.243 4.243 8 N -0.564 5.564 9 Si 0.790 3.210 10 H -0.208 1.208 11 H -0.234 1.234 12 H -0.204 1.204 13 C 0.034 3.966 14 C 0.320 3.680 15 O -0.426 6.426 16 N -0.326 5.326 17 C 0.090 3.910 18 C -0.178 4.178 19 C -0.086 4.086 20 C -0.199 4.199 21 C 0.087 3.913 22 F -0.122 7.122 23 C -0.221 4.221 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.252 0.748 35 H 0.135 0.865 36 H 0.176 0.824 37 H 0.177 0.823 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.720 2.693 -10.037 11.414 hybrid contribution 1.465 -0.398 0.674 1.661 sum -3.255 2.296 -9.362 10.175 Atomic orbital electron populations 1.21670 0.94434 1.02017 1.01740 1.21923 0.96077 0.97684 1.01262 1.20937 0.82457 0.95365 0.98787 1.44155 1.01214 1.83165 1.02377 1.19409 0.90213 1.39919 0.88448 0.91166 1.25279 0.98268 0.99992 1.00753 1.70015 1.09227 1.38632 1.38554 0.85366 0.77978 0.78142 0.79527 1.20825 1.23409 1.20360 1.20721 0.98203 0.90043 0.87651 1.22543 0.74116 0.94031 0.77346 1.90501 1.52110 1.52954 1.47044 1.43928 1.57577 1.05012 1.26101 1.17781 0.92662 0.85909 0.94652 1.21266 0.99225 0.94450 1.02874 1.21121 0.97661 0.94671 0.95144 1.21275 0.93946 1.00867 1.03788 1.17503 0.84288 0.92592 0.96966 1.91470 1.50805 1.90363 1.79565 1.20897 0.98358 0.95595 1.07278 0.93178 0.92230 0.91674 0.92322 0.93630 0.95501 0.93692 0.94559 0.89491 0.90337 0.74809 0.86535 0.82376 0.82257 0.83814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.91 71.98 0.71 -2.79 16 2 C -0.13 -4.20 6.23 30.60 0.19 -4.01 16 3 C 0.15 5.99 5.67 86.38 0.49 6.48 16 4 N -0.59 -28.07 2.03 -706.34 -1.43 -29.50 16 5 C -0.25 -13.40 9.69 84.03 0.81 -12.59 16 6 H 0.07 3.78 7.95 -2.91 -0.02 3.76 16 7 C -0.05 -2.60 4.88 84.86 0.41 -2.19 16 8 N -0.92 -51.18 8.94 21.65 0.19 -50.99 16 9 Si 0.96 44.81 29.62 68.60 2.03 46.84 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.31 -14.83 7.11 99.48 0.71 -14.13 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 C 0.16 7.11 5.41 85.63 0.46 7.57 16 14 C 0.53 23.81 5.61 87.66 0.49 24.30 16 15 O -0.55 -29.58 13.79 -3.05 -0.04 -29.62 16 16 N -0.68 -24.74 5.34 -303.53 -1.62 -26.36 16 17 C 0.19 6.63 6.28 38.15 0.24 6.87 16 18 C -0.16 -5.52 8.65 22.40 0.19 -5.33 16 19 C -0.07 -1.87 10.04 22.24 0.22 -1.64 16 20 C -0.18 -4.62 10.02 22.34 0.22 -4.39 16 21 C 0.11 3.09 7.30 22.36 0.16 3.26 16 22 F -0.14 -4.06 17.27 44.97 0.78 -3.28 16 23 C -0.20 -6.25 9.94 22.43 0.22 -6.02 16 24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.03 1.14 8.08 -2.39 -0.02 1.12 16 30 H 0.04 1.69 8.03 -2.38 -0.02 1.67 16 31 H 0.24 13.68 8.31 -92.71 -0.77 12.91 16 32 H 0.09 4.07 6.36 -2.39 -0.02 4.05 16 33 H 0.08 2.75 8.07 -2.38 -0.02 2.73 16 34 H 0.42 12.17 8.82 -92.71 -0.82 11.35 16 35 H 0.12 4.61 6.41 -2.91 -0.02 4.59 16 36 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 37 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 38 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -66.68 324.86 5.00 -61.68 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.25 Total: 21.73 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 4.84 Total: 9.51 kcal Atomic # 7 Polarization: -104.00 SS G_CDS: -2.86 Total: -106.86 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.04 Total: -29.62 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.78 Total: -3.28 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -66.68 5.00 -61.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044373510.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.220 kcal (2) G-P(sol) polarization free energy of solvation -66.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds