Wall clock time and date at job start Tue Mar 31 2020 02:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46507 * 109.47095 * 2 1 4 4 C 1.46498 * 119.99860 * 269.99892 * 3 2 1 5 5 C 1.50692 * 109.47156 * 269.99765 * 4 3 2 6 6 H 1.07998 * 120.00403 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00238 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99618 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00021 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47535 * 59.99985 * 9 7 5 11 11 H 1.48505 * 109.46981 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47343 * 299.99527 * 9 7 5 13 13 C 1.34774 * 120.00031 * 89.99625 * 3 2 1 14 14 O 1.21583 * 119.99919 * 180.02562 * 13 3 2 15 15 N 1.34774 * 119.99868 * 0.02562 * 13 3 2 16 16 C 1.46506 * 120.00072 * 179.97438 * 15 13 3 17 17 C 1.50703 * 109.47289 * 179.97438 * 16 15 13 18 18 C 1.38218 * 120.01072 * 105.00098 * 17 16 15 19 19 C 1.38214 * 120.02377 * 179.97438 * 18 17 16 20 20 C 1.38265 * 120.05476 * 0.02562 * 19 18 17 21 21 C 1.38180 * 120.02127 * 0.02562 * 20 19 18 22 22 C 1.38437 * 120.01312 * 284.72220 * 17 16 15 23 23 F 1.35097 * 120.02358 * 0.02562 * 22 17 16 24 24 H 1.08998 * 109.47564 * 300.00269 * 1 2 3 25 25 H 1.09004 * 109.47001 * 60.00076 * 1 2 3 26 26 H 1.09004 * 109.47418 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47468 * 240.00275 * 2 1 3 28 28 H 1.08996 * 109.47039 * 119.99625 * 2 1 3 29 29 H 1.09005 * 109.47317 * 30.00250 * 4 3 2 30 30 H 1.09000 * 109.47215 * 149.99676 * 4 3 2 31 31 H 0.97004 * 119.99676 * 179.97438 * 8 7 5 32 32 H 0.97001 * 120.00676 * 359.97438 * 15 13 3 33 33 H 1.09001 * 109.47060 * 300.00359 * 16 15 13 34 34 H 1.09004 * 109.47073 * 59.99848 * 16 15 13 35 35 H 1.08006 * 119.98901 * 359.97438 * 18 17 16 36 36 H 1.07999 * 119.97625 * 179.97438 * 19 18 17 37 37 H 1.08000 * 119.99394 * 179.97438 * 20 19 18 38 38 H 1.08004 * 120.00951 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2304 -1.0961 7 6 4.1494 2.3905 -2.8774 8 7 3.3493 3.1265 -3.6176 9 14 5.9134 2.0965 -3.4169 10 1 6.1402 0.6398 -3.5953 11 1 6.1613 2.7976 -4.7023 12 1 6.8413 2.6189 -2.3818 13 6 2.2428 2.0166 1.1672 14 8 2.6477 3.1631 1.1672 15 7 2.0186 1.3811 2.3343 16 6 2.2632 2.0716 3.6031 17 6 1.9366 1.1483 4.7486 18 6 2.9552 0.5610 5.4752 19 6 2.6560 -0.2853 6.5261 20 6 1.3377 -0.5460 6.8516 21 6 0.3177 0.0393 6.1259 22 6 0.6163 0.8927 5.0772 23 9 -0.3800 1.4703 4.3709 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 1.5816 1.6877 -2.0284 30 1 2.0954 3.1411 -1.1385 31 1 3.6757 3.5176 -4.4431 32 1 1.6953 0.4666 2.3344 33 1 3.3112 2.3658 3.6605 34 1 1.6331 2.9591 3.6612 35 1 3.9854 0.7635 5.2216 36 1 3.4525 -0.7442 7.0931 37 1 1.1050 -1.2078 7.6727 38 1 -0.7120 -0.1648 6.3800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058129893.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:12 Heat of formation + Delta-G solvation = -69.940980 kcal Electronic energy + Delta-G solvation = -21695.493913 eV Core-core repulsion = 18258.645008 eV Total energy + Delta-G solvation = -3436.848905 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.92069 -41.17577 -39.93513 -37.08532 -36.07363 -34.81479 -32.42944 -31.62677 -31.40950 -29.11786 -27.02717 -24.81190 -24.13123 -23.73998 -22.49671 -20.91650 -19.16828 -18.55778 -18.40018 -17.60012 -17.46520 -16.68719 -16.60252 -16.38043 -16.24850 -15.31342 -15.22734 -14.99276 -14.74609 -14.60069 -14.23187 -13.96641 -13.78883 -13.54920 -13.25006 -13.22004 -13.07146 -12.69619 -12.51908 -12.50925 -12.18979 -11.99672 -11.93126 -11.73002 -11.11185 -10.62023 -10.22181 -9.99787 -9.67204 -9.33854 -8.19274 -6.34565 0.07892 0.24606 1.37369 1.42368 1.49591 1.88869 2.26937 2.42133 2.66048 3.08763 3.18641 3.29154 3.48644 3.77134 4.05217 4.07865 4.28714 4.35679 4.38860 4.46258 4.56965 4.59479 4.84236 4.90796 4.93741 5.01043 5.10976 5.19561 5.21965 5.33193 5.38328 5.46222 5.48968 5.59514 5.82048 5.93545 6.09381 6.13891 6.74249 7.15684 7.32461 7.72598 8.87276 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025780 B = 0.004035 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.848206 B = 6937.283711 C = 7372.006753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.105 3.895 3 N -0.618 5.618 4 C 0.279 3.721 5 C -0.543 4.543 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.970 3.030 10 H -0.259 1.259 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.696 3.304 14 O -0.642 6.642 15 N -0.731 5.731 16 C 0.183 3.817 17 C -0.150 4.150 18 C -0.077 4.077 19 C -0.125 4.125 20 C -0.077 4.077 21 C -0.158 4.158 22 C 0.090 3.910 23 F -0.151 7.151 24 H 0.049 0.951 25 H 0.042 0.958 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.025 0.975 30 H -0.005 1.005 31 H 0.267 0.733 32 H 0.404 0.596 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.144 0.856 36 H 0.161 0.839 37 H 0.168 0.832 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.973 -13.461 22.160 26.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.018 4.018 3 N -0.353 5.353 4 C 0.157 3.843 5 C -0.582 4.582 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.794 3.206 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.204 1.204 13 C 0.397 3.603 14 O -0.524 6.524 15 N -0.390 5.390 16 C 0.059 3.941 17 C -0.151 4.151 18 C -0.096 4.096 19 C -0.143 4.143 20 C -0.095 4.095 21 C -0.176 4.176 22 C 0.070 3.930 23 F -0.130 7.130 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.116 0.884 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.043 0.957 30 H 0.013 0.987 31 H 0.076 0.924 32 H 0.242 0.758 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.161 0.839 36 H 0.179 0.821 37 H 0.185 0.815 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.747 -12.514 21.934 25.695 hybrid contribution 0.323 0.349 -0.982 1.091 sum -4.424 -12.165 20.951 24.628 Atomic orbital electron populations 1.22153 0.94824 1.03437 1.01445 1.21613 0.95074 0.81644 1.03453 1.47433 1.67937 1.15020 1.04888 1.18604 0.95302 0.91175 0.79170 1.21708 0.97916 1.32040 1.06523 0.92941 1.25878 1.02521 0.94439 0.96353 1.70055 1.37852 1.34186 1.14829 0.85440 0.78842 0.79035 0.77292 1.18365 1.20274 1.20415 1.16124 0.78637 0.84180 0.81328 1.90831 1.55101 1.19465 1.86992 1.45078 1.72999 1.17574 1.03306 1.19821 1.01279 0.93372 0.79601 1.19867 0.92884 1.02714 0.99644 1.21259 0.98925 0.94891 0.94477 1.21608 0.97997 0.97752 0.96910 1.21509 0.91580 0.97623 0.98748 1.21450 1.02668 0.98106 0.95401 1.17964 0.84077 0.97086 0.93863 1.91492 1.60466 1.83116 1.77933 0.93230 0.93870 0.88396 0.90223 0.89501 0.95728 0.98736 0.92404 0.75843 0.90991 0.92898 0.83856 0.82100 0.81491 0.82960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.48 10.24 71.98 0.74 -3.74 16 2 C 0.10 3.48 5.89 86.38 0.51 3.99 16 3 N -0.62 -28.40 2.46 -844.23 -2.07 -30.47 16 4 C 0.28 15.88 5.16 85.63 0.44 16.32 16 5 C -0.54 -32.48 9.39 25.60 0.24 -32.24 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.41 5.46 84.66 0.46 0.87 16 8 N -0.93 -57.71 13.29 21.45 0.28 -57.43 16 9 Si 0.97 45.92 29.54 68.60 2.03 47.94 16 10 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 13 C 0.70 32.47 8.28 179.06 1.48 33.95 16 14 O -0.64 -36.77 15.92 -3.98 -0.06 -36.84 16 15 N -0.73 -25.16 5.41 -482.28 -2.61 -27.77 16 16 C 0.18 5.60 5.49 85.63 0.47 6.07 16 17 C -0.15 -3.36 5.25 -19.82 -0.10 -3.47 16 18 C -0.08 -1.28 9.67 22.26 0.22 -1.06 16 19 C -0.12 -1.37 10.04 22.27 0.22 -1.15 16 20 C -0.08 -0.77 10.04 22.26 0.22 -0.55 16 21 C -0.16 -2.33 10.03 22.31 0.22 -2.11 16 22 C 0.09 1.96 7.25 22.37 0.16 2.12 16 23 F -0.15 -4.09 16.75 44.97 0.75 -3.34 16 24 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.08 2.72 8.07 -2.39 -0.02 2.70 16 28 H 0.09 2.33 6.36 -2.39 -0.02 2.31 16 29 H 0.02 1.41 8.07 -2.38 -0.02 1.39 16 30 H -0.01 -0.36 7.42 -2.39 -0.02 -0.38 16 31 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 32 H 0.40 11.54 6.19 -92.71 -0.57 10.97 16 33 H 0.07 2.24 7.95 -2.39 -0.02 2.22 16 34 H 0.05 1.82 8.07 -2.38 -0.02 1.80 16 35 H 0.14 2.09 8.00 -2.91 -0.02 2.07 16 36 H 0.16 0.82 8.06 -2.91 -0.02 0.79 16 37 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 38 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -79.60 331.74 4.09 -75.50 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.49 Total: 13.39 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: 5.29 Total: 19.01 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -4.40 Total: -115.67 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.06 Total: -36.84 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.75 Total: -3.34 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -79.60 4.09 -75.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058129893.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.562 kcal (2) G-P(sol) polarization free energy of solvation -79.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds