Wall clock time and date at job start Tue Mar 31 2020 01:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46985 * 2 1 4 4 C 1.52994 * 109.47207 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47227 * 180.02562 * 4 3 2 6 6 N 1.29028 * 124.91689 * 90.33074 * 5 4 3 7 7 C 1.31780 * 117.12362 * 180.22862 * 6 5 4 8 8 C 1.50692 * 122.74984 * 179.75191 * 7 6 5 9 9 N 1.46499 * 109.47340 * 274.73562 * 8 7 6 10 10 C 1.36938 * 120.00459 * 89.99458 * 9 8 7 11 11 H 1.08000 * 120.00470 * 215.33957 * 10 9 8 12 12 C 1.38809 * 119.99565 * 35.33899 * 10 9 8 13 13 N 1.31620 * 120.00090 * 202.07921 * 12 10 9 14 14 Si 1.86802 * 120.00341 * 22.07955 * 12 10 9 15 15 H 1.48506 * 109.46776 * 264.71618 * 14 12 10 16 16 H 1.48500 * 109.47152 * 24.71175 * 14 12 10 17 17 H 1.48499 * 109.47608 * 144.71441 * 14 12 10 18 18 C 1.46508 * 119.99847 * 270.00280 * 9 8 7 19 19 C 1.52997 * 117.49841 * 192.26008 * 18 9 8 20 20 C 1.53000 * 117.49864 * 123.60231 * 18 9 8 21 21 C 1.33633 * 114.49896 * 359.48066 * 7 6 5 22 22 S 1.70970 * 124.91391 * 270.02721 * 5 4 3 23 23 H 1.09003 * 109.46735 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47226 * 299.99544 * 1 2 3 25 25 H 1.09002 * 109.47038 * 60.00158 * 1 2 3 26 26 H 1.08998 * 109.47226 * 240.00456 * 2 1 3 27 27 H 1.08994 * 109.47295 * 119.99832 * 2 1 3 28 28 H 1.09005 * 109.46803 * 59.99780 * 3 2 1 29 29 H 1.08997 * 109.47064 * 300.00539 * 3 2 1 30 30 H 1.08998 * 109.47050 * 60.00427 * 4 3 2 31 31 H 1.09006 * 109.47356 * 300.00293 * 4 3 2 32 32 H 1.09000 * 109.47289 * 154.73469 * 8 7 6 33 33 H 1.09005 * 109.47144 * 34.73233 * 8 7 6 34 34 H 0.97003 * 120.00132 * 180.02562 * 13 12 10 35 35 H 1.08996 * 115.54472 * 337.92633 * 18 9 8 36 36 H 1.09005 * 117.49929 * 359.97438 * 19 18 9 37 37 H 1.09001 * 117.50070 * 145.01710 * 19 18 9 38 38 H 1.08999 * 117.49483 * 214.98361 * 20 18 9 39 39 H 1.08999 * 117.49969 * 359.96998 * 20 18 9 40 40 H 1.08001 * 126.03860 * 180.26929 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0723 2.8635 0.0013 6 7 4.3238 3.5575 1.0596 7 6 4.7536 4.7904 0.8815 8 6 5.0801 5.7134 2.0270 9 7 3.8581 6.3844 2.4772 10 6 3.0856 5.8166 3.4549 11 1 2.0107 5.9150 3.4192 12 6 3.6841 5.1145 4.4920 13 7 2.9915 4.2235 5.1694 14 14 5.4726 5.4341 4.9264 15 1 6.3346 4.4405 4.2370 16 1 5.8505 6.8030 4.4922 17 1 5.6547 5.3128 6.3952 18 6 3.4624 7.6628 1.8810 19 6 2.3522 8.4531 2.5767 20 6 2.0720 7.7468 1.2479 21 6 4.8817 5.1532 -0.3983 22 16 4.3984 3.7867 -1.4003 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.9337 0.9287 -0.8891 31 1 3.9330 0.9289 0.8909 32 1 5.8039 6.4590 1.6980 33 1 5.5018 5.1361 2.8499 34 1 3.4097 3.7331 5.8944 35 1 4.2650 8.2304 1.4102 36 1 1.9160 8.0216 3.4776 37 1 2.4243 9.5406 2.5632 38 1 1.9600 8.3699 0.3606 39 1 1.4520 6.8508 1.2744 40 1 5.2214 6.1142 -0.7554 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058431196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:14 Heat of formation + Delta-G solvation = 82.780100 kcal Electronic energy + Delta-G solvation = -20002.981821 eV Core-core repulsion = 17138.968575 eV Total energy + Delta-G solvation = -2864.013246 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.36518 -37.13640 -35.72905 -33.60122 -31.94686 -30.88979 -28.74738 -26.08127 -25.06548 -23.93313 -21.73837 -21.45973 -20.89948 -19.76715 -19.23507 -17.48195 -16.31721 -15.36696 -15.32719 -15.14709 -14.87711 -14.30152 -13.84339 -13.42741 -13.35476 -13.19447 -12.58405 -12.42605 -12.33559 -12.10258 -11.96962 -11.29241 -11.15537 -11.10286 -10.90966 -10.84248 -10.73132 -10.65350 -10.43779 -10.08480 -9.85883 -9.59457 -9.36702 -8.94862 -8.83432 -8.44388 -8.16366 -6.80569 -5.96815 -3.37255 1.25560 1.88801 2.23710 3.32157 3.43503 3.49490 3.50905 4.50443 4.53857 4.82088 4.89223 5.01492 5.06996 5.14950 5.36556 5.41790 5.54027 5.67696 5.73407 5.74168 5.79478 5.87442 5.89557 5.97304 6.00095 6.02919 6.07660 6.22253 6.22972 6.38201 6.40392 6.46321 6.50986 6.56332 6.77866 6.89406 7.10692 8.01150 8.36747 8.50650 8.94290 9.71639 10.04994 11.18105 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.013642 B = 0.006370 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.952024 B = 4394.443537 C = 4892.109480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.114 4.114 4 C -0.038 4.038 5 C 0.054 3.946 6 N -0.432 5.432 7 C 0.082 3.918 8 C 0.200 3.800 9 N -0.558 5.558 10 C -0.267 4.267 11 H 0.079 0.921 12 C 0.050 3.950 13 N -0.889 5.889 14 Si 0.871 3.129 15 H -0.283 1.283 16 H -0.268 1.268 17 H -0.300 1.300 18 C 0.122 3.878 19 C -0.189 4.189 20 C -0.219 4.219 21 C -0.261 4.261 22 S 0.049 5.951 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.263 0.737 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.454 -2.852 -13.057 13.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.153 4.153 4 C -0.079 4.079 5 C -0.226 4.226 6 N -0.145 5.145 7 C -0.052 4.052 8 C 0.071 3.929 9 N -0.275 5.275 10 C -0.395 4.395 11 H 0.097 0.903 12 C -0.152 4.152 13 N -0.529 5.529 14 Si 0.702 3.298 15 H -0.211 1.211 16 H -0.193 1.193 17 H -0.228 1.228 18 C 0.013 3.987 19 C -0.227 4.227 20 C -0.260 4.260 21 C -0.401 4.401 22 S 0.302 5.698 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.324 -3.393 -13.407 13.893 hybrid contribution 0.980 0.731 0.895 1.515 sum 2.304 -2.662 -12.512 12.998 Atomic orbital electron populations 1.21765 0.95849 1.01285 1.02094 1.21498 0.95977 0.96524 1.01867 1.21614 0.93350 0.97107 1.03264 1.20218 0.96197 0.88025 1.03509 1.27069 1.03714 1.01518 0.90275 1.66150 1.11997 1.06091 1.30256 1.21535 0.97495 0.91024 0.95173 1.20011 0.89304 0.91740 0.91814 1.43644 1.26225 1.16985 1.40597 1.18533 0.90691 1.30608 0.99718 0.90299 1.25256 0.97153 0.96622 0.96139 1.69859 1.37344 1.22568 1.23097 0.87024 0.87251 0.78983 0.76550 1.21077 1.19300 1.22841 1.21061 0.89492 0.88548 0.99593 1.23132 1.05551 0.96880 0.97176 1.23330 1.04702 1.02600 0.95365 1.26662 1.14475 1.03518 0.95411 1.83522 1.63366 1.07980 1.14895 0.92977 0.92351 0.92921 0.92276 0.91715 0.90500 0.92045 0.90425 0.88981 0.92137 0.90961 0.92696 0.89061 0.87762 0.90424 0.90766 0.89514 0.81557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.37 5.93 -26.73 -0.16 -1.53 16 3 C -0.11 -1.60 5.20 -26.73 -0.14 -1.73 16 4 C -0.04 -0.55 5.80 -27.88 -0.16 -0.71 16 5 C 0.05 0.96 6.64 -13.45 -0.09 0.88 16 6 N -0.43 -9.54 10.53 -8.06 -0.08 -9.63 16 7 C 0.08 1.72 6.32 -84.23 -0.53 1.19 16 8 C 0.20 4.46 4.98 -5.20 -0.03 4.44 16 9 N -0.56 -13.29 2.46 -167.03 -0.41 -13.70 16 10 C -0.27 -7.43 8.65 -15.06 -0.13 -7.56 16 11 H 0.08 2.41 7.31 -52.49 -0.38 2.02 16 12 C 0.05 1.44 5.32 -17.43 -0.09 1.35 16 13 N -0.89 -27.19 13.97 55.49 0.78 -26.41 16 14 Si 0.87 22.28 24.92 -169.99 -4.24 18.04 16 15 H -0.28 -7.16 6.67 56.52 0.38 -6.79 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.30 -7.77 7.11 56.52 0.40 -7.36 16 18 C 0.12 2.46 6.61 -67.93 -0.45 2.01 16 19 C -0.19 -3.64 9.79 -26.70 -0.26 -3.90 16 20 C -0.22 -4.18 10.14 -26.70 -0.27 -4.45 16 21 C -0.26 -4.55 11.11 29.12 0.32 -4.22 16 22 S 0.05 0.75 23.18 -107.50 -2.49 -1.74 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.06 1.15 8.00 -51.93 -0.42 0.74 16 33 H 0.07 1.79 2.94 -51.93 -0.15 1.64 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 35 H 0.09 1.60 8.10 -51.93 -0.42 1.18 16 36 H 0.10 2.28 6.83 -51.93 -0.35 1.93 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 40 H 0.17 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 339.61 15.07 5.12 5.12 Total: -1.00 -31.29 339.61 -9.33 -40.62 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.38 Total: 3.24 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -1.62 Total: -15.54 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.28 Total: -49.74 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.24 Total: 18.04 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.49 Total: -1.74 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.29 -9.33 -40.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058431196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.402 kcal (2) G-P(sol) polarization free energy of solvation -31.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds