Wall clock time and date at job start Tue Mar 31 2020 02:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47004 * 2 1 4 4 C 1.50701 * 109.46909 * 119.99821 * 2 1 3 5 5 H 1.08005 * 119.99808 * 114.34619 * 4 2 1 6 6 C 1.37879 * 120.00332 * 294.33515 * 4 2 1 7 7 N 1.31507 * 119.99754 * 157.82762 * 6 4 2 8 8 Si 1.86799 * 119.99707 * 338.11108 * 6 4 2 9 9 H 1.48502 * 109.46945 * 269.71583 * 8 6 4 10 10 H 1.48496 * 109.47460 * 29.72337 * 8 6 4 11 11 H 1.48508 * 109.46718 * 149.72081 * 8 6 4 12 12 N 1.46896 * 109.46781 * 240.00025 * 2 1 3 13 13 C 1.46903 * 110.99720 * 183.95389 * 12 2 1 14 14 C 1.46892 * 111.00567 * 59.99978 * 12 2 1 15 15 C 1.50695 * 109.47690 * 189.99970 * 14 12 2 16 16 O 1.21289 * 119.99658 * 359.97438 * 15 14 12 17 17 N 1.34774 * 120.00331 * 179.97438 * 15 14 12 18 18 C 1.40030 * 120.00241 * 185.20378 * 17 15 14 19 19 C 1.38849 * 120.04820 * 211.17762 * 18 17 15 20 20 C 1.38114 * 119.95691 * 179.77085 * 19 18 17 21 21 C 1.38478 * 120.04306 * 0.50390 * 20 19 18 22 22 F 1.35097 * 119.95294 * 179.72410 * 21 20 19 23 23 C 1.38472 * 120.08795 * 359.74698 * 21 20 19 24 24 C 1.38114 * 120.04649 * 0.02562 * 23 21 20 25 25 H 1.08998 * 109.47328 * 171.62387 * 1 2 3 26 26 H 1.09004 * 109.46682 * 291.61686 * 1 2 3 27 27 H 1.08992 * 109.47233 * 51.61391 * 1 2 3 28 28 H 0.97000 * 120.00366 * 355.22791 * 7 6 4 29 29 H 1.08998 * 109.47327 * 60.00167 * 13 12 2 30 30 H 1.09003 * 109.47123 * 179.97438 * 13 12 2 31 31 H 1.08997 * 109.47435 * 299.99926 * 13 12 2 32 32 H 1.09011 * 109.46998 * 310.00278 * 14 12 2 33 33 H 1.08998 * 109.47064 * 69.99554 * 14 12 2 34 34 H 0.97001 * 120.00121 * 5.20401 * 17 15 14 35 35 H 1.08003 * 120.01913 * 0.02562 * 19 18 17 36 36 H 1.07997 * 119.97759 * 180.22576 * 20 19 18 37 37 H 1.08000 * 119.97584 * 179.97438 * 23 21 20 38 38 H 1.08003 * 120.02093 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5758 -1.6387 1.1340 6 6 1.7982 -0.1752 2.4794 7 7 1.8267 -0.9491 3.5423 8 14 1.4328 1.6477 2.6608 9 1 2.7036 2.3897 2.8608 10 1 0.7588 2.1421 1.4334 11 1 0.5457 1.8605 3.8326 12 7 2.0196 -0.6925 -1.1994 13 6 3.4850 -0.7945 -1.1870 14 6 1.5486 -0.0265 -2.4210 15 6 1.8578 -0.8912 -3.6159 16 8 2.4161 -1.9573 -3.4646 17 7 1.5140 -0.4800 -4.8524 18 6 1.7019 -1.3289 -5.9501 19 6 1.9841 -0.7961 -7.2008 20 6 2.1737 -1.6354 -8.2812 21 6 2.0722 -3.0070 -8.1198 22 9 2.2525 -3.8259 -9.1790 23 6 1.7857 -3.5401 -6.8744 24 6 1.6000 -2.7044 -5.7905 25 1 -0.3634 -1.0167 -0.1497 26 1 -0.3633 0.3786 0.9554 27 1 -0.3633 0.6381 -0.8055 28 1 1.9434 -1.9068 3.4419 29 1 3.8029 -1.3532 -0.3067 30 1 3.8208 -1.3117 -2.0859 31 1 3.9187 0.2051 -1.1592 32 1 0.4721 0.1324 -2.3563 33 1 2.0518 0.9345 -2.5280 34 1 1.1365 0.4041 -4.9821 35 1 2.0593 0.2738 -7.3279 36 1 2.3968 -1.2215 -9.2534 37 1 1.7065 -4.6101 -6.7507 38 1 1.3762 -3.1207 -4.8194 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058575375.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:10 Heat of formation + Delta-G solvation = -36.680516 kcal Electronic energy + Delta-G solvation = -21370.872027 eV Core-core repulsion = 17935.465404 eV Total energy + Delta-G solvation = -3435.406623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.00992 -40.60729 -38.60272 -36.71337 -34.69117 -32.77443 -31.35382 -30.25924 -29.62366 -27.67900 -24.49252 -23.94434 -23.48681 -22.38398 -20.49766 -19.34978 -18.08749 -17.65861 -17.47215 -17.04732 -16.11279 -15.71391 -15.55200 -14.81692 -14.52299 -14.23917 -14.03415 -13.73048 -13.60480 -13.37259 -13.00589 -12.81087 -12.61474 -12.43405 -11.87132 -11.59913 -11.35995 -11.27650 -10.95225 -10.62650 -10.44285 -10.37671 -10.28392 -9.83629 -9.55507 -9.28017 -8.90033 -8.27581 -8.17576 -7.41241 -6.49076 -4.05588 0.88695 1.02109 2.61933 2.87805 3.36511 3.38622 3.45757 3.54048 4.11009 4.47069 4.48986 4.62299 4.72442 4.85202 4.99835 5.15370 5.20896 5.36542 5.49493 5.56455 5.67595 5.88613 6.01906 6.06799 6.12649 6.23907 6.26450 6.36741 6.50324 6.61360 6.76665 6.82116 6.93387 7.21173 7.27956 7.67018 7.92949 8.15693 8.28883 8.42398 8.97777 9.59882 10.90114 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.045371 B = 0.003254 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.983983 B = 8601.667518 C = 8861.674480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.190 3.810 3 H -0.006 1.006 4 C -0.596 4.596 5 H 0.066 0.934 6 C 0.035 3.965 7 N -0.900 5.900 8 Si 1.039 2.961 9 H -0.287 1.287 10 H -0.277 1.277 11 H -0.285 1.285 12 N -0.512 5.512 13 C 0.035 3.965 14 C 0.031 3.969 15 C 0.514 3.486 16 O -0.494 6.494 17 N -0.682 5.682 18 C 0.150 3.850 19 C -0.126 4.126 20 C -0.133 4.133 21 C 0.072 3.928 22 F -0.144 7.144 23 C -0.130 4.130 24 C -0.096 4.096 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.019 0.981 28 H 0.271 0.729 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.007 0.993 32 H 0.106 0.894 33 H 0.055 0.945 34 H 0.411 0.589 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.029 3.200 -22.194 22.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.083 3.917 3 H 0.011 0.989 4 C -0.634 4.634 5 H 0.085 0.915 6 C -0.171 4.171 7 N -0.533 5.533 8 Si 0.867 3.133 9 H -0.213 1.213 10 H -0.203 1.203 11 H -0.211 1.211 12 N -0.236 5.236 13 C -0.113 4.113 14 C -0.101 4.101 15 C 0.302 3.698 16 O -0.365 6.365 17 N -0.329 5.329 18 C 0.054 3.946 19 C -0.146 4.146 20 C -0.153 4.153 21 C 0.052 3.948 22 F -0.122 7.122 23 C -0.150 4.150 24 C -0.117 4.117 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.026 0.974 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.246 0.754 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.156 0.844 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.098 3.111 -20.850 21.184 hybrid contribution 0.461 -0.021 -1.409 1.483 sum -1.636 3.090 -22.258 22.531 Atomic orbital electron populations 1.22163 0.98273 1.00197 0.98993 1.19703 0.91761 0.92119 0.88104 0.98869 1.21908 1.40578 1.10786 0.90139 0.91543 1.25639 0.93792 1.05568 0.92063 1.70790 1.44078 1.06685 1.31722 0.84104 0.77188 0.76222 0.75821 1.21337 1.20294 1.21122 1.61808 1.10888 1.51158 0.99784 1.22344 0.87107 0.98906 1.02951 1.22061 1.03040 0.94722 0.90271 1.21260 0.77352 0.87737 0.83470 1.90679 1.38242 1.22800 1.84809 1.43767 1.64427 1.18820 1.05838 1.17832 0.98955 0.90566 0.87207 1.20716 1.02434 1.00233 0.91241 1.20878 1.02929 0.91402 1.00056 1.17676 1.04881 0.88125 0.84135 1.91482 1.93150 1.72354 1.55256 1.21078 1.01769 1.01207 0.90920 1.21178 0.98992 0.91628 0.99878 0.92756 0.92959 0.96202 0.91902 0.90207 0.91948 0.97399 0.87583 0.92698 0.75353 0.84753 0.84556 0.84443 0.83282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.15 37.16 0.30 -2.61 16 2 C 0.19 4.39 1.61 -68.87 -0.11 4.28 16 3 H -0.01 -0.14 6.52 -51.93 -0.34 -0.48 16 4 C -0.60 -16.40 8.01 -34.44 -0.28 -16.67 16 5 H 0.07 2.01 6.88 -52.48 -0.36 1.65 16 6 C 0.04 1.00 5.20 -17.82 -0.09 0.91 16 7 N -0.90 -27.16 13.70 55.43 0.76 -26.40 16 8 Si 1.04 24.35 26.37 -169.99 -4.48 19.87 16 9 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -5.92 6.00 56.52 0.34 -5.58 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 12 N -0.51 -10.66 4.36 -237.73 -1.04 -11.69 16 13 C 0.03 0.72 8.88 60.07 0.53 1.25 16 14 C 0.03 0.48 5.26 -4.98 -0.03 0.45 16 15 C 0.51 7.61 7.28 -10.99 -0.08 7.53 16 16 O -0.49 -9.11 11.89 5.55 0.07 -9.04 16 17 N -0.68 -7.35 5.35 -9.85 -0.05 -7.40 16 18 C 0.15 1.69 6.32 -83.66 -0.53 1.16 16 19 C -0.13 -1.13 9.96 -39.40 -0.39 -1.52 16 20 C -0.13 -1.22 10.02 -39.54 -0.40 -1.62 16 21 C 0.07 0.78 7.30 -39.41 -0.29 0.49 16 22 F -0.14 -1.63 17.26 2.25 0.04 -1.59 16 23 C -0.13 -1.47 10.02 -39.54 -0.40 -1.86 16 24 C -0.10 -1.21 8.66 -39.40 -0.34 -1.56 16 25 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.05 1.14 5.80 -51.93 -0.30 0.84 16 27 H 0.02 0.34 6.66 -51.93 -0.35 -0.01 16 28 H 0.27 8.21 8.73 -40.82 -0.36 7.85 16 29 H 0.08 1.83 6.34 -51.93 -0.33 1.50 16 30 H 0.06 1.23 5.82 -51.93 -0.30 0.93 16 31 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 32 H 0.11 1.49 6.01 -51.92 -0.31 1.18 16 33 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 34 H 0.41 2.93 8.81 -40.82 -0.36 2.57 16 35 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 37 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 38 H 0.15 2.15 6.27 -52.48 -0.33 1.82 16 LS Contribution 312.24 15.07 4.71 4.71 Total: -1.00 -32.04 312.24 -6.82 -38.87 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -4.73 Total: 2.45 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -2.09 Total: -9.76 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.33 Total: -45.49 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.07 Total: -9.04 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -4.48 Total: 19.87 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.04 -6.82 -38.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058575375.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.187 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds