Wall clock time and date at job start Tue Mar 31 2020 02:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47014 * 2 1 4 4 C 1.50699 * 109.47376 * 239.99416 * 2 1 3 5 5 C 1.38216 * 120.01501 * 265.02682 * 4 2 1 6 6 C 1.38226 * 120.02514 * 179.97438 * 5 4 2 7 7 C 1.38265 * 120.05353 * 0.02562 * 6 5 4 8 8 C 1.38177 * 120.02212 * 359.70277 * 7 6 5 9 9 C 1.38436 * 120.00926 * 85.00045 * 4 2 1 10 10 F 1.35104 * 120.02854 * 0.02562 * 9 4 2 11 11 N 1.46900 * 109.47003 * 119.99584 * 2 1 3 12 12 C 1.46894 * 111.00416 * 176.04487 * 11 2 1 13 13 C 1.46904 * 110.99891 * 300.00095 * 11 2 1 14 14 C 1.50705 * 109.47120 * 169.99715 * 13 11 2 15 15 O 1.21292 * 119.99652 * 0.02562 * 14 13 11 16 16 N 1.34769 * 120.00000 * 180.02562 * 14 13 11 17 17 C 1.37097 * 120.00094 * 180.02562 * 16 14 13 18 18 H 1.08007 * 120.00052 * 359.97438 * 17 16 14 19 19 C 1.38948 * 120.00259 * 180.02562 * 17 16 14 20 20 N 1.31410 * 120.00093 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00092 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46985 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47187 * 119.99706 * 21 19 17 24 24 H 1.48500 * 109.47185 * 239.99718 * 21 19 17 25 25 H 1.09002 * 109.46643 * 60.00260 * 1 2 3 26 26 H 1.08994 * 109.47297 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47223 * 300.00892 * 1 2 3 28 28 H 1.08001 * 119.98647 * 359.95224 * 5 4 2 29 29 H 1.08001 * 119.97063 * 179.97438 * 6 5 4 30 30 H 1.07994 * 119.98907 * 179.97438 * 7 6 5 31 31 H 1.07999 * 120.01627 * 180.27269 * 8 7 6 32 32 H 1.09005 * 109.46747 * 60.00290 * 12 11 2 33 33 H 1.08998 * 109.47576 * 179.97438 * 12 11 2 34 34 H 1.09004 * 109.47363 * 300.00485 * 12 11 2 35 35 H 1.08999 * 109.47338 * 289.99529 * 13 11 2 36 36 H 1.09003 * 109.47280 * 50.00302 * 13 11 2 37 37 H 0.96998 * 120.00395 * 0.02562 * 16 14 13 38 38 H 0.96996 * 120.00346 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.3607 -2.0517 -1.1686 6 6 2.8210 -2.7037 -2.2972 7 6 2.9541 -2.0153 -3.4888 8 6 2.6212 -0.6758 -3.5542 9 6 2.1647 -0.0202 -2.4230 10 9 1.8441 1.2908 -2.4846 11 7 2.0196 -0.6924 1.1995 12 6 3.4850 -0.7945 1.1872 13 6 1.5486 -0.0262 2.4211 14 6 1.8578 -0.8909 3.6160 15 8 2.4161 -1.9570 3.4648 16 7 1.5139 -0.4796 4.8525 17 6 1.7957 -1.2659 5.9396 18 1 2.2928 -2.2153 5.8051 19 6 1.4407 -0.8421 7.2144 20 7 0.8354 0.3127 7.3781 21 14 1.8240 -1.9140 8.6955 22 1 2.5039 -3.1552 8.2456 23 1 2.7118 -1.1724 9.6267 24 1 0.5605 -2.2666 9.3916 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 2.2579 -2.5903 -0.2382 29 1 3.0777 -3.7517 -2.2478 30 1 3.3143 -2.5256 -4.3698 31 1 2.7210 -0.1392 -4.4862 32 1 3.9186 0.2052 1.1593 33 1 3.8208 -1.3108 2.0865 34 1 3.8029 -1.3532 0.3069 35 1 2.0518 0.9347 2.5280 36 1 0.4721 0.1326 2.3564 37 1 1.0671 0.3728 4.9734 38 1 0.5872 0.6084 8.2679 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065552751.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:41 Heat of formation + Delta-G solvation = -61.548785 kcal Electronic energy + Delta-G solvation = -21724.074485 eV Core-core repulsion = 18287.589493 eV Total energy + Delta-G solvation = -3436.484992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.89100 -40.89141 -39.91962 -37.96693 -35.91015 -33.33458 -33.14317 -31.62888 -30.58533 -29.22809 -26.68670 -25.62684 -24.17851 -23.40474 -21.42334 -20.80121 -19.83469 -18.60999 -18.00489 -17.48448 -16.89217 -16.62746 -16.43928 -16.38180 -16.00654 -15.44599 -15.27981 -15.19507 -15.05972 -14.39771 -14.03989 -13.92320 -13.51590 -13.47167 -13.27030 -13.09748 -12.89060 -12.72731 -12.47694 -12.45055 -12.37880 -12.13264 -12.10449 -11.60015 -11.45236 -10.29080 -9.99111 -9.79427 -9.59397 -9.28696 -8.45500 -5.93960 0.21302 0.31159 1.37196 1.42415 1.56589 2.05883 2.27999 2.60777 2.72427 3.21080 3.33151 3.39715 3.54329 3.92365 4.08392 4.15643 4.19145 4.25324 4.34204 4.42613 4.47689 4.52665 4.59565 4.60696 4.77044 4.90145 5.01409 5.11531 5.17332 5.23182 5.24042 5.42242 5.47434 5.54195 5.86379 5.99960 6.04295 6.15086 6.61658 7.14213 7.57477 8.12993 8.72284 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.037149 B = 0.003555 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.542189 B = 7874.954357 C = 8348.931709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.121 3.879 3 H 0.048 0.952 4 C -0.121 4.121 5 C -0.082 4.082 6 C -0.133 4.133 7 C -0.087 4.087 8 C -0.156 4.156 9 C 0.081 3.919 10 F -0.148 7.148 11 N -0.519 5.519 12 C 0.022 3.978 13 C 0.053 3.947 14 C 0.445 3.555 15 O -0.611 6.611 16 N -0.575 5.575 17 C -0.330 4.330 18 H 0.080 0.920 19 C -0.014 4.014 20 N -0.922 5.922 21 Si 0.993 3.007 22 H -0.272 1.272 23 H -0.272 1.272 24 H -0.271 1.271 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.129 0.871 29 H 0.148 0.852 30 H 0.164 0.836 31 H 0.155 0.845 32 H 0.020 0.980 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.114 0.886 37 H 0.395 0.605 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.410 0.351 -20.564 20.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.013 3.987 3 H 0.066 0.934 4 C -0.123 4.123 5 C -0.100 4.100 6 C -0.151 4.151 7 C -0.105 4.105 8 C -0.175 4.175 9 C 0.061 3.939 10 F -0.127 7.127 11 N -0.244 5.244 12 C -0.125 4.125 13 C -0.078 4.078 14 C 0.232 3.768 15 O -0.496 6.496 16 N -0.212 5.212 17 C -0.459 4.459 18 H 0.098 0.902 19 C -0.213 4.213 20 N -0.563 5.563 21 Si 0.817 3.183 22 H -0.197 1.197 23 H -0.197 1.197 24 H -0.197 1.197 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.147 0.853 29 H 0.166 0.834 30 H 0.181 0.819 31 H 0.172 0.828 32 H 0.038 0.962 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.132 0.868 37 H 0.229 0.771 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.506 -0.679 -20.496 20.562 hybrid contribution 0.153 1.224 1.193 1.716 sum 1.659 0.545 -19.303 19.381 Atomic orbital electron populations 1.21861 0.92153 1.02919 1.02702 1.20474 0.96725 0.94494 0.87012 0.93398 1.19799 1.03363 0.95586 0.93513 1.21142 0.96331 0.92903 0.99650 1.21566 0.99642 1.01528 0.92329 1.21387 0.97255 0.92947 0.98913 1.21386 1.02054 0.96414 0.97643 1.17752 1.02831 0.78092 0.95213 1.91453 1.90760 1.33426 1.97059 1.61564 1.11248 1.51458 1.00129 1.22549 0.86744 0.99682 1.03556 1.21819 1.02979 0.94732 0.88296 1.20618 0.83382 0.88226 0.84561 1.90455 1.47414 1.25875 1.85896 1.41926 1.53407 1.20812 1.05081 1.19700 1.37622 1.02972 0.85656 0.90191 1.26034 0.96295 0.97890 1.01121 1.69680 1.40845 1.20861 1.24923 0.84873 0.78240 0.77949 0.77283 1.19705 1.19706 1.19665 0.90923 0.91981 0.91268 0.85291 0.83389 0.81861 0.82758 0.96195 0.91843 0.90004 0.91901 0.86815 0.77114 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.97 71.98 0.65 -2.79 16 2 C 0.12 3.35 2.06 44.17 0.09 3.44 16 3 H 0.05 1.35 7.79 -2.39 -0.02 1.33 16 4 C -0.12 -3.11 4.32 -19.82 -0.09 -3.19 16 5 C -0.08 -2.02 7.33 22.26 0.16 -1.86 16 6 C -0.13 -2.44 10.04 22.27 0.22 -2.22 16 7 C -0.09 -1.31 10.04 22.26 0.22 -1.08 16 8 C -0.16 -2.75 10.03 22.31 0.22 -2.52 16 9 C 0.08 1.87 7.24 22.38 0.16 2.03 16 10 F -0.15 -3.67 16.57 44.97 0.75 -2.92 16 11 N -0.52 -17.42 3.50 -906.03 -3.17 -20.60 16 12 C 0.02 0.76 8.46 127.69 1.08 1.84 16 13 C 0.05 1.89 5.26 85.56 0.45 2.34 16 14 C 0.44 21.34 7.47 87.66 0.66 21.99 16 15 O -0.61 -33.43 13.91 -3.07 -0.04 -33.47 16 16 N -0.57 -29.73 5.29 -306.98 -1.62 -31.36 16 17 C -0.33 -18.79 9.68 84.04 0.81 -17.98 16 18 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 19 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 20 N -0.92 -50.07 13.05 21.66 0.28 -49.79 16 21 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 1.64 6.20 -2.39 -0.01 1.62 16 28 H 0.13 3.75 6.85 -2.91 -0.02 3.73 16 29 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 30 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 31 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.06 2.61 5.82 -2.39 -0.01 2.59 16 34 H 0.08 2.48 5.31 -2.38 -0.01 2.46 16 35 H 0.06 2.09 8.12 -2.39 -0.02 2.07 16 36 H 0.11 3.64 5.83 -2.39 -0.01 3.62 16 37 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 38 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -66.02 317.48 3.68 -62.33 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: 0.36 Total: 30.94 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 5.11 Total: -0.27 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -4.51 Total: -101.74 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.04 Total: -33.47 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.75 Total: -2.92 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -66.02 3.68 -62.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065552751.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.784 kcal (2) G-P(sol) polarization free energy of solvation -66.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds