Wall clock time and date at job start Tue Mar 31 2020 02:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36934 * 119.99964 * 2 1 4 4 H 1.08002 * 120.00490 * 200.27013 * 3 2 1 5 5 C 1.38816 * 120.00055 * 20.27401 * 3 2 1 6 6 N 1.31621 * 119.99731 * 15.02002 * 5 3 2 7 7 Si 1.86796 * 120.00284 * 195.01715 * 5 3 2 8 8 H 1.48504 * 109.46955 * 85.00035 * 7 5 3 9 9 H 1.48506 * 109.47392 * 205.00341 * 7 5 3 10 10 H 1.48505 * 109.47143 * 325.00493 * 7 5 3 11 11 C 1.46501 * 120.00318 * 179.97438 * 2 1 3 12 12 C 1.50700 * 109.47308 * 270.00868 * 11 2 1 13 13 O 1.21285 * 120.00039 * 359.97438 * 12 11 2 14 14 N 1.34770 * 120.00201 * 180.02562 * 12 11 2 15 15 C 1.46506 * 119.99998 * 359.97438 * 14 12 11 16 16 C 1.46494 * 120.00355 * 179.97438 * 14 12 11 17 17 C 1.50713 * 109.47176 * 89.99649 * 16 14 12 18 18 C 1.38212 * 120.01050 * 104.99972 * 17 16 14 19 19 C 1.38221 * 120.02445 * 179.72385 * 18 17 16 20 20 C 1.38266 * 120.05164 * 0.30278 * 19 18 17 21 21 C 1.38176 * 120.02377 * 359.97438 * 20 19 18 22 22 C 1.38435 * 120.01349 * 285.30235 * 17 16 14 23 23 F 1.35102 * 120.02733 * 359.97438 * 22 17 16 24 24 H 1.08996 * 109.47576 * 275.09891 * 1 2 3 25 25 H 1.09002 * 109.47268 * 35.10796 * 1 2 3 26 26 H 1.09003 * 109.47075 * 155.09592 * 1 2 3 27 27 H 0.97005 * 120.00112 * 180.02562 * 6 5 3 28 28 H 1.08997 * 109.47391 * 149.99857 * 11 2 1 29 29 H 1.08999 * 109.46712 * 30.00048 * 11 2 1 30 30 H 1.09004 * 109.47023 * 270.00540 * 15 14 12 31 31 H 1.09000 * 109.46934 * 30.00237 * 15 14 12 32 32 H 1.08996 * 109.47098 * 150.00556 * 15 14 12 33 33 H 1.09000 * 109.47129 * 330.00071 * 16 14 12 34 34 H 1.09002 * 109.47797 * 209.99751 * 16 14 12 35 35 H 1.08002 * 119.99319 * 0.02562 * 18 17 16 36 36 H 1.08005 * 119.97588 * 180.27331 * 19 18 17 37 37 H 1.08001 * 119.98778 * 179.97438 * 20 19 18 38 38 H 1.08003 * 120.01010 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1795 1.2149 -0.3240 5 6 1.5201 2.3508 0.4166 6 7 0.3863 2.2844 1.0819 7 14 2.2818 4.0127 0.0330 8 1 1.8688 4.4446 -1.3265 9 1 1.8206 5.0110 1.0311 10 1 3.7618 3.9037 0.0893 11 6 2.1975 -1.2687 0.0006 12 6 2.4486 -1.7032 1.4216 13 8 2.0548 -1.0201 2.3432 14 7 3.1116 -2.8503 1.6683 15 6 3.5878 -3.6752 0.5551 16 6 3.3561 -3.2725 3.0497 17 6 2.2096 -4.1281 3.5239 18 6 2.3672 -5.4970 3.6318 19 6 1.3177 -6.2814 4.0721 20 6 0.1073 -5.6985 4.3993 21 6 -0.0542 -4.3308 4.2867 22 6 0.9965 -3.5440 3.8457 23 9 0.8396 -2.2067 3.7353 24 1 -0.3634 0.0913 1.0235 25 1 -0.3634 0.8407 -0.5910 26 1 -0.3633 -0.9321 -0.4328 27 1 -0.0538 3.0984 1.3727 28 1 3.1499 -1.1386 -0.5133 29 1 1.6085 -2.0285 -0.5129 30 1 2.8160 -4.3939 0.2794 31 1 3.8123 -3.0373 -0.2997 32 1 4.4892 -4.2081 0.8575 33 1 3.4418 -2.3935 3.6885 34 1 4.2814 -3.8468 3.0958 35 1 3.3121 -5.9535 3.3766 36 1 1.4431 -7.3505 4.1604 37 1 -0.7121 -6.3124 4.7428 38 1 -0.9996 -3.8757 4.5427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972744.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:10 Heat of formation + Delta-G solvation = -11.727446 kcal Electronic energy + Delta-G solvation = -22535.309389 eV Core-core repulsion = 19100.984813 eV Total energy + Delta-G solvation = -3434.324576 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.26064 -39.40467 -38.42998 -35.39434 -34.58240 -31.99547 -31.03772 -30.39298 -27.73923 -26.71860 -25.74348 -24.91273 -22.66607 -21.90335 -21.00001 -18.55885 -17.23301 -16.70709 -16.55085 -15.96529 -15.82563 -15.48303 -14.94718 -14.60127 -14.45104 -14.07220 -13.50899 -13.21594 -13.07689 -12.82927 -12.72132 -12.32160 -12.20016 -12.07769 -11.88360 -11.60981 -11.40708 -11.07797 -10.83665 -10.77401 -10.56697 -10.27186 -9.93764 -9.79166 -9.10743 -8.79684 -8.52988 -8.36105 -8.11150 -6.68703 -5.60354 -3.04766 1.18742 1.27322 3.40622 3.48007 3.50785 3.53031 3.66959 3.86200 4.51939 4.58896 4.74159 4.83329 4.97116 5.10001 5.29835 5.37119 5.43604 5.54127 5.59365 5.69261 5.77395 5.85105 5.88973 6.03184 6.14762 6.23350 6.26115 6.34761 6.37398 6.40439 6.80006 6.97180 7.06011 7.45495 7.83067 7.93258 8.05854 8.46478 9.21014 9.32373 9.94148 10.41298 11.44174 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027396 B = 0.004971 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.792499 B = 5631.600926 C = 6069.291037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.572 5.572 3 C -0.257 4.257 4 H 0.069 0.931 5 C 0.008 3.992 6 N -0.894 5.894 7 Si 0.905 3.095 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.281 1.281 11 C 0.137 3.863 12 C 0.463 3.537 13 O -0.483 6.483 14 N -0.633 5.633 15 C 0.088 3.912 16 C 0.155 3.845 17 C -0.141 4.141 18 C -0.084 4.084 19 C -0.144 4.144 20 C -0.093 4.093 21 C -0.165 4.165 22 C 0.123 3.877 23 F -0.101 7.101 24 H 0.035 0.965 25 H 0.046 0.954 26 H -0.005 1.005 27 H 0.251 0.749 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.785 -19.097 2.850 19.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.292 5.292 3 C -0.387 4.387 4 H 0.087 0.913 5 C -0.192 4.192 6 N -0.538 5.538 7 Si 0.735 3.265 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.004 3.996 12 C 0.248 3.752 13 O -0.352 6.352 14 N -0.373 5.373 15 C -0.056 4.056 16 C 0.031 3.969 17 C -0.143 4.143 18 C -0.102 4.102 19 C -0.162 4.162 20 C -0.112 4.112 21 C -0.184 4.184 22 C 0.102 3.898 23 F -0.078 7.078 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.013 0.987 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.398 -18.396 3.380 19.010 hybrid contribution 0.314 0.899 0.081 0.956 sum 3.712 -17.497 3.461 18.218 Atomic orbital electron populations 1.20833 0.81997 0.95216 0.99948 1.43919 1.02082 0.99809 1.83378 1.19135 0.97157 0.84503 1.37903 0.91309 1.25014 0.97874 0.98364 0.97905 1.70134 1.18537 1.26572 1.38545 0.86281 0.78659 0.84124 0.77460 1.21442 1.21771 1.20614 1.21012 0.97563 0.90142 0.90871 1.23735 0.76815 0.79063 0.95563 1.90750 1.46929 1.51607 1.45911 1.48621 1.59904 1.24136 1.04628 1.21633 0.98530 0.95273 0.90166 1.20120 0.93547 0.97835 0.85372 1.20515 0.95916 0.95179 1.02699 1.20889 0.99119 0.91933 0.98296 1.21084 0.93507 0.99872 1.01779 1.20958 0.97610 0.93814 0.98786 1.21246 0.99052 0.94501 1.03638 1.17857 0.94128 0.79310 0.98458 1.91826 1.95711 1.27775 1.92524 0.94660 0.93534 0.98656 0.93840 0.91114 0.91895 0.93641 0.90923 0.92114 0.89247 0.90309 0.85520 0.85801 0.85536 0.85015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.37 9.02 59.85 0.54 4.91 16 2 N -0.57 -15.28 2.42 -182.50 -0.44 -15.72 16 3 C -0.26 -7.44 9.68 -15.06 -0.15 -7.59 16 4 H 0.07 1.92 7.86 -52.49 -0.41 1.51 16 5 C 0.01 0.23 5.06 -17.43 -0.09 0.14 16 6 N -0.89 -27.82 10.66 55.49 0.59 -27.23 16 7 Si 0.90 22.82 29.58 -169.99 -5.03 17.80 16 8 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 9 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 C 0.14 2.91 4.74 -5.19 -0.02 2.88 16 12 C 0.46 10.04 7.48 -10.99 -0.08 9.96 16 13 O -0.48 -12.93 12.58 5.55 0.07 -12.86 16 14 N -0.63 -10.39 2.86 -182.95 -0.52 -10.91 16 15 C 0.09 1.02 10.29 59.85 0.62 1.63 16 16 C 0.15 2.31 5.45 -5.19 -0.03 2.28 16 17 C -0.14 -2.05 5.47 -104.55 -0.57 -2.62 16 18 C -0.08 -0.93 9.67 -39.60 -0.38 -1.31 16 19 C -0.14 -1.46 10.04 -39.58 -0.40 -1.86 16 20 C -0.09 -1.03 10.04 -39.59 -0.40 -1.42 16 21 C -0.17 -2.32 10.03 -39.52 -0.40 -2.71 16 22 C 0.12 2.09 7.19 -39.42 -0.28 1.81 16 23 F -0.10 -2.22 13.03 2.25 0.03 -2.19 16 24 H 0.04 1.05 7.40 -51.93 -0.38 0.67 16 25 H 0.05 1.29 7.21 -51.93 -0.37 0.91 16 26 H -0.01 -0.12 7.84 -51.93 -0.41 -0.53 16 27 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.07 1.37 7.29 -51.93 -0.38 0.99 16 29 H 0.06 1.18 7.82 -51.93 -0.41 0.77 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.81 6.44 -51.93 -0.33 0.48 16 32 H 0.06 0.54 7.89 -51.93 -0.41 0.13 16 33 H 0.09 1.59 7.37 -51.93 -0.38 1.21 16 34 H 0.08 0.88 7.70 -51.93 -0.40 0.48 16 35 H 0.13 1.05 8.00 -52.49 -0.42 0.63 16 36 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 37 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 320.05 15.07 4.82 4.82 Total: -1.00 -36.28 320.05 -7.26 -43.54 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -5.14 Total: -3.36 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -1.64 Total: 6.12 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.37 Total: -53.87 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.07 Total: -12.86 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.03 Total: -2.19 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.03 Total: 17.80 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -36.28 -7.26 -43.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972744.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.810 kcal (2) G-P(sol) polarization free energy of solvation -36.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds