Wall clock time and date at job start Tue Mar 31 2020 02:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36934 * 119.99964 * 2 1 4 4 H 1.08002 * 120.00490 * 200.27013 * 3 2 1 5 5 C 1.38816 * 120.00055 * 20.27401 * 3 2 1 6 6 N 1.31621 * 119.99731 * 15.02002 * 5 3 2 7 7 Si 1.86796 * 120.00284 * 195.01715 * 5 3 2 8 8 H 1.48504 * 109.46955 * 85.00035 * 7 5 3 9 9 H 1.48506 * 109.47392 * 205.00341 * 7 5 3 10 10 H 1.48505 * 109.47143 * 325.00493 * 7 5 3 11 11 C 1.46501 * 120.00318 * 179.97438 * 2 1 3 12 12 C 1.50700 * 109.47308 * 270.00868 * 11 2 1 13 13 O 1.21285 * 120.00039 * 359.97438 * 12 11 2 14 14 N 1.34770 * 120.00201 * 180.02562 * 12 11 2 15 15 C 1.46506 * 119.99998 * 359.97438 * 14 12 11 16 16 C 1.46494 * 120.00355 * 179.97438 * 14 12 11 17 17 C 1.50713 * 109.47176 * 89.99649 * 16 14 12 18 18 C 1.38212 * 120.01050 * 104.99972 * 17 16 14 19 19 C 1.38221 * 120.02445 * 179.72385 * 18 17 16 20 20 C 1.38266 * 120.05164 * 0.30278 * 19 18 17 21 21 C 1.38176 * 120.02377 * 359.97438 * 20 19 18 22 22 C 1.38435 * 120.01349 * 285.30235 * 17 16 14 23 23 F 1.35102 * 120.02733 * 359.97438 * 22 17 16 24 24 H 1.08996 * 109.47576 * 275.09891 * 1 2 3 25 25 H 1.09002 * 109.47268 * 35.10796 * 1 2 3 26 26 H 1.09003 * 109.47075 * 155.09592 * 1 2 3 27 27 H 0.97005 * 120.00112 * 180.02562 * 6 5 3 28 28 H 1.08997 * 109.47391 * 149.99857 * 11 2 1 29 29 H 1.08999 * 109.46712 * 30.00048 * 11 2 1 30 30 H 1.09004 * 109.47023 * 270.00540 * 15 14 12 31 31 H 1.09000 * 109.46934 * 30.00237 * 15 14 12 32 32 H 1.08996 * 109.47098 * 150.00556 * 15 14 12 33 33 H 1.09000 * 109.47129 * 330.00071 * 16 14 12 34 34 H 1.09002 * 109.47797 * 209.99751 * 16 14 12 35 35 H 1.08002 * 119.99319 * 0.02562 * 18 17 16 36 36 H 1.08005 * 119.97588 * 180.27331 * 19 18 17 37 37 H 1.08001 * 119.98778 * 179.97438 * 20 19 18 38 38 H 1.08003 * 120.01010 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1795 1.2149 -0.3240 5 6 1.5201 2.3508 0.4166 6 7 0.3863 2.2844 1.0819 7 14 2.2818 4.0127 0.0330 8 1 1.8688 4.4446 -1.3265 9 1 1.8206 5.0110 1.0311 10 1 3.7618 3.9037 0.0893 11 6 2.1975 -1.2687 0.0006 12 6 2.4486 -1.7032 1.4216 13 8 2.0548 -1.0201 2.3432 14 7 3.1116 -2.8503 1.6683 15 6 3.5878 -3.6752 0.5551 16 6 3.3561 -3.2725 3.0497 17 6 2.2096 -4.1281 3.5239 18 6 2.3672 -5.4970 3.6318 19 6 1.3177 -6.2814 4.0721 20 6 0.1073 -5.6985 4.3993 21 6 -0.0542 -4.3308 4.2867 22 6 0.9965 -3.5440 3.8457 23 9 0.8396 -2.2067 3.7353 24 1 -0.3634 0.0913 1.0235 25 1 -0.3634 0.8407 -0.5910 26 1 -0.3633 -0.9321 -0.4328 27 1 -0.0538 3.0984 1.3727 28 1 3.1499 -1.1386 -0.5133 29 1 1.6085 -2.0285 -0.5129 30 1 2.8160 -4.3939 0.2794 31 1 3.8123 -3.0373 -0.2997 32 1 4.4892 -4.2081 0.8575 33 1 3.4418 -2.3935 3.6885 34 1 4.2814 -3.8468 3.0958 35 1 3.3121 -5.9535 3.3766 36 1 1.4431 -7.3505 4.1604 37 1 -0.7121 -6.3124 4.7428 38 1 -0.9996 -3.8757 4.5427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972744.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:09 Heat of formation + Delta-G solvation = -35.759093 kcal Electronic energy + Delta-G solvation = -22536.351480 eV Core-core repulsion = 19100.984813 eV Total energy + Delta-G solvation = -3435.366667 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.64045 -40.74297 -39.65528 -37.19086 -36.23685 -33.47380 -32.76176 -31.36609 -29.31132 -28.02039 -27.82110 -26.29450 -23.68602 -23.55851 -22.37406 -20.06988 -18.79650 -18.32935 -17.93405 -17.30366 -17.07958 -16.89453 -16.58734 -16.07253 -15.93073 -15.36216 -15.10704 -14.87474 -14.55963 -14.28243 -14.04256 -13.67408 -13.50334 -13.23173 -13.18185 -13.05027 -12.85634 -12.73050 -12.55421 -12.44827 -12.17018 -12.04341 -11.93493 -11.83357 -10.80880 -10.45914 -9.92070 -9.63484 -9.40989 -8.81425 -7.80814 -5.28627 0.20814 0.28956 1.43465 1.46810 1.54790 2.03927 2.26755 2.51837 2.79135 3.34160 3.50651 3.68787 3.76492 3.78410 4.01809 4.17476 4.35432 4.43525 4.45927 4.54765 4.55653 4.65605 4.70171 4.75341 4.86959 4.99965 5.03060 5.20080 5.25188 5.30680 5.41302 5.47383 5.58869 5.70578 5.79781 6.03382 6.26789 6.63781 7.11849 7.62128 7.86429 8.26716 9.23333 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027396 B = 0.004971 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.792499 B = 5631.600926 C = 6069.291037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.592 5.592 3 C -0.263 4.263 4 H 0.077 0.923 5 C -0.057 4.057 6 N -0.936 5.936 7 Si 0.974 3.026 8 H -0.276 1.276 9 H -0.301 1.301 10 H -0.268 1.268 11 C 0.133 3.867 12 C 0.459 3.541 13 O -0.547 6.547 14 N -0.625 5.625 15 C 0.079 3.921 16 C 0.156 3.844 17 C -0.152 4.152 18 C -0.072 4.072 19 C -0.129 4.129 20 C -0.087 4.087 21 C -0.182 4.182 22 C 0.066 3.934 23 F -0.146 7.146 24 H -0.011 1.011 25 H 0.025 0.975 26 H 0.031 0.969 27 H 0.244 0.756 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.046 0.954 34 H 0.127 0.873 35 H 0.168 0.832 36 H 0.168 0.832 37 H 0.160 0.840 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.026 -23.186 1.797 24.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.313 5.313 3 C -0.393 4.393 4 H 0.095 0.905 5 C -0.252 4.252 6 N -0.582 5.582 7 Si 0.801 3.199 8 H -0.202 1.202 9 H -0.228 1.228 10 H -0.193 1.193 11 C 0.003 3.997 12 C 0.245 3.755 13 O -0.421 6.421 14 N -0.362 5.362 15 C -0.063 4.063 16 C 0.033 3.967 17 C -0.155 4.155 18 C -0.091 4.091 19 C -0.146 4.146 20 C -0.105 4.105 21 C -0.201 4.201 22 C 0.047 3.953 23 F -0.124 7.124 24 H 0.007 0.993 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.064 0.936 34 H 0.145 0.855 35 H 0.185 0.815 36 H 0.186 0.814 37 H 0.177 0.823 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.704 -22.585 2.293 23.407 hybrid contribution -0.328 1.862 0.443 1.942 sum 5.376 -20.723 2.736 21.583 Atomic orbital electron populations 1.20480 0.82736 0.95970 0.96995 1.44074 1.02096 1.01240 1.83875 1.19547 0.97415 0.85698 1.36601 0.90495 1.25900 0.98662 1.02235 0.98371 1.70363 1.20439 1.26820 1.40619 0.85193 0.78254 0.79217 0.77190 1.20217 1.22752 1.19292 1.21212 0.98581 0.88748 0.91187 1.23396 0.77008 0.80321 0.94770 1.90754 1.49786 1.54213 1.47392 1.48386 1.57990 1.22951 1.06842 1.21993 1.00515 0.95134 0.88653 1.20227 0.95996 0.96956 0.83564 1.20572 0.94526 0.96736 1.03634 1.21329 1.01110 0.90025 0.96587 1.21638 0.92206 1.01899 0.98898 1.21392 0.99383 0.92335 0.97379 1.21407 0.98317 0.96066 1.04285 1.18524 0.96756 0.77945 1.02115 1.91715 1.96127 1.31154 1.93453 0.99308 0.95670 0.95089 0.94692 0.88778 0.88935 0.92160 0.90411 0.88251 0.93577 0.85470 0.81461 0.81418 0.82274 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 10.16 9.02 127.77 1.15 11.32 16 2 N -0.59 -32.31 2.42 -731.32 -1.77 -34.08 16 3 C -0.26 -15.48 9.68 84.04 0.81 -14.67 16 4 H 0.08 4.30 7.86 -2.91 -0.02 4.27 16 5 C -0.06 -3.46 5.06 84.86 0.43 -3.03 16 6 N -0.94 -61.56 10.66 21.65 0.23 -61.33 16 7 Si 0.97 48.31 29.58 68.60 2.03 50.34 16 8 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 9 H -0.30 -15.21 7.11 99.48 0.71 -14.51 16 10 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 11 C 0.13 5.59 4.74 85.63 0.41 6.00 16 12 C 0.46 20.24 7.48 87.66 0.66 20.89 16 13 O -0.55 -31.20 12.58 -3.05 -0.04 -31.24 16 14 N -0.62 -19.59 2.86 -851.11 -2.43 -22.02 16 15 C 0.08 1.49 10.29 127.77 1.31 2.81 16 16 C 0.16 4.48 5.45 85.64 0.47 4.95 16 17 C -0.15 -4.24 5.47 -19.82 -0.11 -4.35 16 18 C -0.07 -1.27 9.67 22.26 0.22 -1.05 16 19 C -0.13 -1.93 10.04 22.27 0.22 -1.71 16 20 C -0.09 -1.65 10.04 22.26 0.22 -1.42 16 21 C -0.18 -5.18 10.03 22.31 0.22 -4.95 16 22 C 0.07 2.37 7.19 22.37 0.16 2.53 16 23 F -0.15 -7.13 13.03 44.97 0.59 -6.54 16 24 H -0.01 -0.74 7.40 -2.39 -0.02 -0.76 16 25 H 0.02 1.44 7.21 -2.39 -0.02 1.43 16 26 H 0.03 1.44 7.84 -2.39 -0.02 1.42 16 27 H 0.24 15.57 8.31 -92.70 -0.77 14.80 16 28 H 0.09 3.47 7.29 -2.39 -0.02 3.45 16 29 H 0.09 3.28 7.82 -2.39 -0.02 3.26 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.43 6.44 -2.39 -0.02 1.41 16 32 H 0.10 1.18 7.89 -2.39 -0.02 1.16 16 33 H 0.05 1.73 7.37 -2.39 -0.02 1.71 16 34 H 0.13 2.33 7.70 -2.39 -0.02 2.31 16 35 H 0.17 1.58 8.00 -2.91 -0.02 1.56 16 36 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 37 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.13 3.52 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -88.56 320.05 5.84 -82.71 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: 1.05 Total: 4.86 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 6.18 Total: 17.30 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -3.97 Total: -117.43 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.04 Total: -31.24 kcal Atomic # 9 Polarization: -7.13 SS G_CDS: 0.59 Total: -6.54 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.03 Total: 50.34 kcal Total: -88.56 5.84 -82.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972744.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.955 kcal (2) G-P(sol) polarization free energy of solvation -88.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds