Wall clock time and date at job start Tue Mar 31 2020 01:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47323 * 2 1 4 4 C 1.53001 * 109.47317 * 119.99909 * 2 1 3 5 5 N 1.46498 * 109.47379 * 174.45852 * 4 2 1 6 6 C 1.46495 * 120.00069 * 275.65684 * 5 4 2 7 7 C 1.50700 * 109.47373 * 278.45354 * 6 5 4 8 8 H 1.08007 * 119.99611 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00348 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99859 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00043 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46976 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47125 * 120.00297 * 11 9 7 14 14 H 1.48502 * 109.46907 * 239.99973 * 11 9 7 15 15 C 1.34787 * 119.99660 * 95.65485 * 5 4 2 16 16 O 1.21563 * 119.99941 * 6.23832 * 15 5 4 17 17 C 1.47724 * 119.99496 * 186.23973 * 15 5 4 18 18 C 1.40159 * 120.52866 * 150.75505 * 17 15 5 19 19 C 1.38151 * 118.32319 * 179.97438 * 18 17 15 20 20 C 1.38752 * 119.28549 * 359.97438 * 19 18 17 21 21 F 1.35099 * 119.49404 * 179.97438 * 20 19 18 22 22 N 1.32153 * 121.01704 * 359.97438 * 20 19 18 23 23 C 1.31691 * 121.83901 * 0.04580 * 22 20 19 24 24 H 1.08999 * 109.47590 * 300.00386 * 1 2 3 25 25 H 1.09002 * 109.47373 * 60.00587 * 1 2 3 26 26 H 1.08996 * 109.47164 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47596 * 240.00129 * 2 1 3 28 28 H 1.09002 * 109.47294 * 185.42492 * 3 2 1 29 29 H 1.09003 * 109.46840 * 305.42459 * 3 2 1 30 30 H 1.08997 * 109.46973 * 65.41892 * 3 2 1 31 31 H 1.09003 * 109.47135 * 54.46052 * 4 2 1 32 32 H 1.09005 * 109.47100 * 294.46304 * 4 2 1 33 33 H 1.08997 * 109.47346 * 38.45805 * 6 5 4 34 34 H 1.09009 * 109.47022 * 158.45737 * 6 5 4 35 35 H 0.97001 * 119.99936 * 179.97438 * 10 9 7 36 36 H 1.07999 * 120.83178 * 359.95224 * 18 17 15 37 37 H 1.07993 * 120.35934 * 179.72515 * 19 18 17 38 38 H 1.07998 * 119.70446 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.4989 -0.8378 1.1844 6 6 4.1132 -1.9457 0.4487 7 6 4.1237 -3.1791 1.3144 8 1 3.7141 -3.1414 2.3131 9 6 4.6561 -4.3557 0.8317 10 7 5.1554 -4.4015 -0.3841 11 14 4.6685 -5.8848 1.9047 12 1 4.0521 -5.5721 3.2191 13 1 3.8938 -6.9628 1.2391 14 1 6.0688 -6.3351 2.1085 15 6 4.2759 0.0743 1.8017 16 8 3.7703 0.9270 2.5053 17 6 5.7418 0.0377 1.6232 18 6 6.4981 1.2152 1.7006 19 6 7.8659 1.1282 1.5271 20 6 8.4419 -0.1105 1.2845 21 9 9.7791 -0.2003 1.1137 22 7 7.7027 -1.2040 1.2180 23 6 6.3959 -1.1697 1.3765 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1257 1.4440 -0.0972 29 1 1.5995 1.9836 -0.8375 30 1 1.7581 1.9275 0.9345 31 1 1.5979 -1.7163 1.3003 32 1 1.7599 -0.1533 2.1365 33 1 3.5399 -2.1425 -0.4572 34 1 5.1362 -1.6810 0.1809 35 1 5.5303 -5.2292 -0.7236 36 1 6.0234 2.1664 1.8908 37 1 8.4797 2.0154 1.5757 38 1 5.8252 -2.0845 1.3148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070083501.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:29 Heat of formation + Delta-G solvation = -30.664730 kcal Electronic energy + Delta-G solvation = -22419.395112 eV Core-core repulsion = 18984.249354 eV Total energy + Delta-G solvation = -3435.145759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.78676 -40.35674 -38.56667 -36.08274 -34.55879 -32.52491 -32.33175 -30.71973 -27.79698 -26.87154 -26.05677 -23.86165 -23.33386 -22.83324 -20.15907 -18.99300 -17.76883 -17.35820 -16.77555 -16.45235 -15.79481 -15.55045 -14.74642 -14.66631 -14.41924 -14.18066 -13.85600 -13.50897 -13.11535 -12.95209 -12.70518 -12.52815 -12.47919 -12.25263 -11.97116 -11.46522 -11.25858 -11.06963 -10.91608 -10.69243 -10.58944 -10.35873 -10.17098 -9.88194 -9.72293 -9.45930 -9.08106 -8.81984 -8.47988 -7.84213 -6.36937 -4.49136 0.94115 1.41741 3.16072 3.24199 3.26857 3.30550 3.68985 3.88214 4.07417 4.22633 4.79783 4.94904 5.04566 5.12882 5.20991 5.23750 5.27127 5.42140 5.65413 5.84267 5.92227 5.97021 6.04049 6.08951 6.12066 6.23707 6.29912 6.34744 6.46759 6.53366 6.59368 6.71116 6.99656 7.01778 7.34665 7.58046 7.79310 8.02732 8.15948 8.59706 8.80923 9.21344 10.67208 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.010261 B = 0.008805 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.153035 B = 3179.363668 C = 5388.174357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.137 4.137 4 C 0.123 3.877 5 N -0.584 5.584 6 C 0.207 3.793 7 C -0.556 4.556 8 H 0.069 0.931 9 C 0.072 3.928 10 N -0.873 5.873 11 Si 0.899 3.101 12 H -0.269 1.269 13 H -0.280 1.280 14 H -0.278 1.278 15 C 0.565 3.435 16 O -0.563 6.563 17 C -0.203 4.203 18 C -0.001 4.001 19 C -0.222 4.222 20 C 0.314 3.686 21 F -0.118 7.118 22 N -0.515 5.515 23 C 0.160 3.840 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.059 0.941 35 H 0.271 0.729 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.626 8.559 0.298 8.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.195 4.195 4 C 0.000 4.000 5 N -0.312 5.312 6 C 0.087 3.913 7 C -0.594 4.594 8 H 0.088 0.912 9 C -0.134 4.134 10 N -0.508 5.508 11 Si 0.725 3.275 12 H -0.194 1.194 13 H -0.206 1.206 14 H -0.204 1.204 15 C 0.353 3.647 16 O -0.445 6.445 17 C -0.208 4.208 18 C -0.027 4.027 19 C -0.243 4.243 20 C 0.160 3.840 21 F -0.097 7.097 22 N -0.230 5.230 23 C 0.005 3.995 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -1.342 8.065 0.333 8.183 hybrid contribution 0.118 -0.201 0.426 0.485 sum -1.225 7.864 0.758 7.995 Atomic orbital electron populations 1.21738 0.95060 1.01696 1.01388 1.21501 0.95462 0.96755 0.99573 1.21754 1.00825 0.95764 1.01122 1.21435 0.80064 1.00965 0.97510 1.48026 1.06014 1.26271 1.50913 1.20277 0.95284 0.83154 0.92543 1.21486 1.41975 0.94308 1.01620 0.91240 1.25022 0.94193 0.99109 0.95108 1.69920 1.37200 1.28223 1.15501 0.86406 0.78275 0.82200 0.80585 1.19369 1.20602 1.20364 1.17818 0.85565 0.81440 0.79888 1.90682 1.75052 1.38768 1.39957 1.21146 0.95878 0.95567 1.08217 1.21461 0.92025 0.98582 0.90629 1.21601 0.96180 0.97474 1.09039 1.18691 0.78905 0.90769 0.95591 1.91589 1.28990 1.96944 1.92169 1.67441 1.08591 1.29808 1.17111 1.25628 0.87527 1.01355 0.84973 0.92799 0.92930 0.92531 0.90895 0.93243 0.93631 0.92432 0.90122 0.90403 0.94242 0.92436 0.91926 0.83487 0.83690 0.74381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.19 37.15 0.34 -1.39 16 2 C -0.11 -1.71 3.12 -90.62 -0.28 -1.99 16 3 C -0.14 -2.04 8.25 37.16 0.31 -1.73 16 4 C 0.12 2.15 4.97 -4.04 -0.02 2.13 16 5 N -0.58 -11.61 2.28 -176.22 -0.40 -12.01 16 6 C 0.21 4.59 4.67 -5.20 -0.02 4.57 16 7 C -0.56 -13.39 7.53 -34.44 -0.26 -13.65 16 8 H 0.07 1.71 7.81 -52.48 -0.41 1.29 16 9 C 0.07 1.79 5.34 -17.82 -0.10 1.69 16 10 N -0.87 -22.60 13.29 55.43 0.74 -21.86 16 11 Si 0.90 19.63 29.54 -169.99 -5.02 14.61 16 12 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 13 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 14 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 15 C 0.56 11.38 6.13 -12.38 -0.08 11.30 16 16 O -0.56 -11.90 15.73 5.31 0.08 -11.81 16 17 C -0.20 -3.89 5.60 -104.82 -0.59 -4.47 16 18 C 0.00 -0.01 9.73 -38.89 -0.38 -0.39 16 19 C -0.22 -3.26 10.07 -39.42 -0.40 -3.66 16 20 C 0.31 5.55 8.41 -17.22 -0.14 5.40 16 21 F -0.12 -1.97 17.29 2.25 0.04 -1.93 16 22 N -0.52 -10.68 10.36 -13.25 -0.14 -10.82 16 23 C 0.16 3.35 8.69 -17.14 -0.15 3.20 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.17 7.98 -51.93 -0.41 0.76 16 28 H 0.05 0.81 7.02 -51.93 -0.36 0.45 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 32 H 0.08 1.37 7.19 -51.93 -0.37 1.00 16 33 H 0.04 0.92 7.96 -51.93 -0.41 0.51 16 34 H 0.06 1.34 4.02 -52.01 -0.21 1.13 16 35 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.15 2.03 7.98 -52.49 -0.42 1.61 16 37 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.24 5.55 3.04 -52.49 -0.16 5.39 16 LS Contribution 319.68 15.07 4.82 4.82 Total: -1.00 -26.49 319.68 -6.50 -32.99 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -4.86 Total: 5.00 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -1.77 Total: 1.02 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.20 Total: -44.70 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -26.49 -6.50 -32.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070083501.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.326 kcal (2) G-P(sol) polarization free energy of solvation -26.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds