Wall clock time and date at job start Tue Mar 31 2020 02:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47493 * 2 1 4 4 C 1.50699 * 109.46894 * 240.00234 * 2 1 3 5 5 C 1.38245 * 119.97811 * 285.87417 * 4 2 1 6 6 C 1.38198 * 120.02908 * 179.72508 * 5 4 2 7 7 C 1.38457 * 119.97546 * 0.53103 * 6 5 4 8 8 F 1.35102 * 120.02792 * 179.72398 * 7 6 5 9 9 C 1.38467 * 119.94314 * 359.74468 * 7 6 5 10 10 C 1.38189 * 119.97763 * 0.02562 * 9 7 6 11 11 N 1.46899 * 109.47153 * 120.00532 * 2 1 3 12 12 C 1.46902 * 110.99682 * 302.20901 * 11 2 1 13 13 C 1.46894 * 111.00013 * 178.25380 * 11 2 1 14 14 C 1.50707 * 109.47228 * 189.99806 * 13 11 2 15 15 O 1.21293 * 119.99448 * 359.97438 * 14 13 11 16 16 N 1.34773 * 120.00008 * 180.02562 * 14 13 11 17 17 C 1.37102 * 119.99935 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99517 * 359.97438 * 17 16 14 19 19 C 1.38940 * 120.00049 * 179.97438 * 17 16 14 20 20 N 1.31407 * 120.00273 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99979 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47063 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47276 * 120.00050 * 21 19 17 24 24 H 1.48506 * 109.47098 * 240.00094 * 21 19 17 25 25 H 1.08999 * 109.46972 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46882 * 300.00124 * 1 2 3 27 27 H 1.09004 * 109.47020 * 59.99902 * 1 2 3 28 28 H 1.08009 * 119.98374 * 359.97438 * 5 4 2 29 29 H 1.08001 * 120.01367 * 180.25276 * 6 5 4 30 30 H 1.07999 * 120.00914 * 179.97438 * 9 7 6 31 31 H 1.07997 * 119.98875 * 180.02562 * 10 9 7 32 32 H 1.08998 * 109.47105 * 66.98947 * 12 11 2 33 33 H 1.09003 * 109.46884 * 306.98687 * 12 11 2 34 34 H 1.09005 * 109.47078 * 186.99003 * 12 11 2 35 35 H 1.09000 * 109.47186 * 309.99395 * 13 11 2 36 36 H 1.09005 * 109.47595 * 69.99824 * 13 11 2 37 37 H 0.96996 * 120.00248 * 359.97438 * 16 14 13 38 38 H 0.97003 * 120.00302 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.9537 -2.0881 -1.3132 6 6 2.4088 -2.7402 -2.4435 7 6 2.9537 -2.0140 -3.4888 8 9 3.4040 -2.6508 -4.5920 9 6 3.0371 -0.6345 -3.4025 10 6 2.5771 0.0157 -2.2733 11 7 2.0197 -0.6926 1.1994 12 6 1.5059 -0.0577 2.4204 13 6 3.4875 -0.7485 1.2126 14 6 3.9453 -1.6686 2.3149 15 8 3.1290 -2.2228 3.0203 16 7 5.2617 -1.8748 2.5174 17 6 5.6781 -2.7123 3.5198 18 1 4.9512 -3.2064 4.1474 19 6 7.0352 -2.9252 3.7283 20 7 7.9196 -2.3244 2.9643 21 14 7.6026 -4.0658 5.0946 22 1 6.4194 -4.6132 5.8057 23 1 8.3910 -5.1815 4.5126 24 1 8.4485 -3.3087 6.0521 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.5327 -2.6548 -0.4957 29 1 2.3435 -3.8162 -2.5095 30 1 3.4624 -0.0671 -4.2171 31 1 2.6417 1.0916 -2.2059 32 1 0.4270 -0.2012 2.4782 33 1 1.7300 1.0088 2.3973 34 1 1.9798 -0.5097 3.2919 35 1 3.8455 -1.1239 0.2539 36 1 3.8877 0.2509 1.3839 37 1 5.9145 -1.4313 1.9535 38 1 8.8670 -2.4734 3.1096 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076668301.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:48 Heat of formation + Delta-G solvation = -48.710785 kcal Electronic energy + Delta-G solvation = -21744.843397 eV Core-core repulsion = 18308.915102 eV Total energy + Delta-G solvation = -3435.928294 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -48.86737 -39.77311 -38.27612 -36.53891 -33.89819 -31.88021 -31.21979 -31.10975 -29.41240 -27.29382 -25.47786 -24.01156 -23.14495 -22.36393 -20.08499 -19.10997 -17.82437 -17.64981 -16.52148 -16.36066 -15.59609 -15.54074 -15.17601 -14.69742 -14.46173 -14.16412 -13.79745 -13.54592 -13.50244 -13.27833 -13.02680 -12.84691 -12.28308 -12.15504 -11.88794 -11.66487 -11.45366 -11.28268 -11.21695 -11.00036 -10.85819 -10.76077 -10.33279 -10.21028 -9.46887 -9.08015 -8.53117 -8.42546 -7.96235 -7.86070 -6.40026 -3.80815 1.12765 1.26397 3.17260 3.27732 3.34719 3.56817 3.92286 4.00027 4.25253 4.27624 4.61010 4.77702 4.89274 5.10281 5.20638 5.24936 5.28266 5.34443 5.45138 5.57564 5.72262 5.73459 5.83620 5.95228 5.95641 6.00900 6.06569 6.13193 6.19002 6.29749 6.32354 6.50782 6.60372 6.90297 7.28335 7.40313 7.56873 8.08398 8.63596 9.19924 9.56698 10.08318 10.77856 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016391 B = 0.004725 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.806929 B = 5923.926429 C = 7099.185204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.119 3.881 3 H 0.047 0.953 4 C -0.088 4.088 5 C -0.057 4.057 6 C -0.155 4.155 7 C 0.093 3.907 8 F -0.144 7.144 9 C -0.157 4.157 10 C -0.089 4.089 11 N -0.511 5.511 12 C 0.023 3.977 13 C 0.043 3.957 14 C 0.446 3.554 15 O -0.578 6.578 16 N -0.565 5.565 17 C -0.297 4.297 18 H 0.104 0.896 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.928 3.072 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.143 0.857 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.064 0.936 33 H 0.014 0.986 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.391 0.609 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.702 6.497 -11.083 16.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.011 3.989 3 H 0.064 0.936 4 C -0.088 4.088 5 C -0.076 4.076 6 C -0.174 4.174 7 C 0.073 3.927 8 F -0.123 7.123 9 C -0.176 4.176 10 C -0.108 4.108 11 N -0.235 5.235 12 C -0.125 4.125 13 C -0.088 4.088 14 C 0.231 3.769 15 O -0.462 6.462 16 N -0.201 5.201 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.161 0.839 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.083 0.917 33 H 0.032 0.968 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.225 0.775 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.208 5.606 -10.637 16.438 hybrid contribution 1.376 0.445 0.014 1.446 sum -9.832 6.050 -10.623 15.689 Atomic orbital electron populations 1.21856 0.93297 1.02999 1.01598 1.20590 0.95801 0.94546 0.87979 0.93564 1.19877 0.99360 0.94151 0.95449 1.21030 0.96210 0.93948 0.96371 1.21226 1.01689 1.00906 0.93585 1.17761 0.99767 0.90828 0.84304 1.91483 1.87074 1.82327 1.51399 1.21027 1.03912 0.92587 1.00103 1.20875 0.97392 0.99978 0.92523 1.61654 1.08015 1.52571 1.01267 1.22539 1.00792 0.95303 0.93827 1.21884 0.88151 0.98638 1.00108 1.19717 0.83269 0.86554 0.87362 1.90487 1.52716 1.53029 1.49975 1.41880 1.05090 1.41931 1.31242 1.19738 0.91674 1.21675 1.09607 0.87866 1.25253 0.95621 0.98367 0.98725 1.69621 1.02026 1.43458 1.39234 0.85817 0.78764 0.79537 0.80323 1.19221 1.20762 1.20803 0.91439 0.91980 0.92336 0.83890 0.84806 0.85018 0.85323 0.91712 0.96778 0.88735 0.89376 0.93647 0.77546 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.82 37.16 0.33 -1.15 16 2 C 0.12 1.49 2.26 -68.87 -0.16 1.33 16 3 H 0.05 0.54 7.94 -51.93 -0.41 0.13 16 4 C -0.09 -1.10 3.44 -104.61 -0.36 -1.46 16 5 C -0.06 -0.77 8.65 -39.59 -0.34 -1.11 16 6 C -0.16 -2.01 10.03 -39.52 -0.40 -2.41 16 7 C 0.09 1.20 7.30 -39.42 -0.29 0.91 16 8 F -0.14 -1.95 17.27 2.25 0.04 -1.91 16 9 C -0.16 -1.80 10.03 -39.52 -0.40 -2.19 16 10 C -0.09 -0.99 9.66 -39.59 -0.38 -1.37 16 11 N -0.51 -8.16 3.87 -237.72 -0.92 -9.08 16 12 C 0.02 0.36 8.61 60.07 0.52 0.87 16 13 C 0.04 0.78 5.18 -4.98 -0.03 0.76 16 14 C 0.45 10.45 7.40 -10.98 -0.08 10.37 16 15 O -0.58 -15.27 13.98 5.55 0.08 -15.19 16 16 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 17 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 18 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.72 13.05 55.49 0.72 -24.00 16 21 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 26 H 0.06 0.62 6.53 -51.93 -0.34 0.28 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.14 2.04 7.90 -52.48 -0.41 1.63 16 29 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.13 1.14 7.99 -52.49 -0.42 0.72 16 32 H 0.06 0.89 6.67 -51.93 -0.35 0.54 16 33 H 0.01 0.19 8.11 -51.93 -0.42 -0.23 16 34 H 0.09 1.81 5.78 -51.93 -0.30 1.51 16 35 H 0.09 1.54 6.35 -51.93 -0.33 1.21 16 36 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 37 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 321.98 15.07 4.85 4.85 Total: -1.00 -30.37 321.98 -7.06 -37.42 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -4.93 Total: 9.63 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -1.82 Total: -3.39 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.25 Total: -47.51 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.08 Total: -15.19 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.37 -7.06 -37.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076668301.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.287 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds