Wall clock time and date at job start Tue Mar 31 2020 02:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46885 * 2 1 4 4 C 1.46503 * 120.00192 * 270.00200 * 3 2 1 5 5 C 1.50698 * 109.47262 * 270.00127 * 4 3 2 6 6 H 1.07998 * 119.99895 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99883 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99985 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47051 * 90.00096 * 9 7 5 11 11 H 1.48498 * 109.47131 * 209.99674 * 9 7 5 12 12 H 1.48497 * 109.47115 * 329.99934 * 9 7 5 13 13 C 1.34773 * 119.99929 * 90.00243 * 3 2 1 14 14 O 1.21591 * 120.00076 * 179.97438 * 13 3 2 15 15 N 1.34777 * 120.00146 * 0.02562 * 13 3 2 16 16 C 1.40073 * 119.99903 * 185.63032 * 15 13 3 17 17 C 1.38794 * 120.08367 * 24.76710 * 16 15 13 18 18 C 1.38146 * 119.96005 * 179.97438 * 17 16 15 19 19 C 1.38283 * 120.10821 * 359.97438 * 18 17 16 20 20 C 1.50696 * 119.92388 * 179.97438 * 19 18 17 21 21 C 1.38273 * 120.15144 * 359.79092 * 19 18 17 22 22 C 1.38301 * 120.04860 * 0.46180 * 21 19 18 23 23 F 1.35097 * 120.05918 * 179.79383 * 22 21 19 24 24 H 1.09000 * 109.46862 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46886 * 299.99487 * 1 2 3 26 26 H 1.08996 * 109.47726 * 59.99568 * 1 2 3 27 27 H 1.09005 * 109.46886 * 240.00513 * 2 1 3 28 28 H 1.08991 * 109.47304 * 120.00301 * 2 1 3 29 29 H 1.09004 * 109.46570 * 30.00115 * 4 3 2 30 30 H 1.08999 * 109.47145 * 149.99829 * 4 3 2 31 31 H 0.96998 * 120.00250 * 180.02562 * 8 7 5 32 32 H 0.97003 * 119.99809 * 5.62113 * 15 13 3 33 33 H 1.08006 * 120.01868 * 359.97438 * 17 16 15 34 34 H 1.08001 * 119.94846 * 179.97438 * 18 17 16 35 35 H 1.09009 * 109.46915 * 89.99795 * 20 19 18 36 36 H 1.08991 * 109.47508 * 210.00292 * 20 19 18 37 37 H 1.09002 * 109.47043 * 330.00279 * 20 19 18 38 38 H 1.07999 * 119.97076 * 180.23492 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6857 1.8352 -1.7038 6 1 4.3425 1.2304 -1.0963 7 6 4.1489 2.3899 -2.8781 8 7 3.3485 3.1252 -3.6186 9 14 5.9129 2.0959 -3.4178 10 1 5.9756 0.8748 -4.2604 11 1 6.3919 3.2630 -4.2011 12 1 6.7733 1.9162 -2.2209 13 6 2.2429 2.0166 1.1672 14 8 2.6486 3.1628 1.1672 15 7 2.0189 1.3810 2.3344 16 6 2.1385 2.0762 3.5446 17 6 1.9746 3.4541 3.5745 18 6 2.0925 4.1371 4.7695 19 6 2.3732 3.4501 5.9363 20 6 2.5015 4.1994 7.2375 21 6 2.5325 2.0768 5.9125 22 6 2.4210 1.3873 4.7189 23 9 2.5808 0.0460 4.6947 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.5815 1.6878 -2.0283 30 1 2.0954 3.1411 -1.1384 31 1 3.6743 3.5151 -4.4449 32 1 1.7747 0.4423 2.3364 33 1 1.7549 3.9921 2.6640 34 1 1.9653 5.2094 4.7925 35 1 1.5262 4.2575 7.7210 36 1 3.2002 3.6766 7.8905 37 1 2.8707 5.2062 7.0421 38 1 2.7479 1.5428 6.8262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080163492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:53 Heat of formation + Delta-G solvation = -65.647588 kcal Electronic energy + Delta-G solvation = -21827.206301 eV Core-core repulsion = 18390.543572 eV Total energy + Delta-G solvation = -3436.662729 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.93403 -41.76661 -39.83269 -37.22325 -36.20678 -34.84451 -32.42568 -31.72865 -31.50106 -29.19652 -27.24054 -25.00004 -24.43411 -24.01637 -22.50347 -20.89043 -19.64933 -18.62520 -18.38038 -17.88387 -17.26918 -16.87965 -16.74318 -16.36020 -15.97994 -15.36655 -15.10431 -14.84635 -14.64073 -14.54333 -14.35006 -14.18277 -13.77606 -13.35582 -13.18338 -13.05069 -12.89363 -12.74708 -12.64723 -12.54321 -12.38689 -12.23026 -11.95890 -11.76018 -11.40546 -10.91068 -10.64340 -9.82161 -9.61248 -8.89685 -8.22886 -6.37639 0.12313 0.25192 1.35637 1.38538 1.48001 1.58875 2.06113 2.37588 2.67627 2.88144 3.06847 3.16531 3.73944 3.95155 3.97787 4.20852 4.30032 4.30592 4.44855 4.50202 4.72665 4.79105 4.89470 4.93619 4.94554 5.03376 5.10286 5.16093 5.17199 5.30217 5.33992 5.48555 5.52728 5.60464 5.74436 5.96973 6.00085 6.04748 6.70315 6.92888 7.28568 7.52184 8.83646 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020116 B = 0.004519 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.568934 B = 6195.034819 C = 6737.003163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.610 5.610 4 C 0.279 3.721 5 C -0.545 4.545 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.925 5.925 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.696 3.304 14 O -0.612 6.612 15 N -0.676 5.676 16 C 0.119 3.881 17 C -0.127 4.127 18 C -0.106 4.106 19 C -0.081 4.081 20 C -0.107 4.107 21 C -0.127 4.127 22 C 0.051 3.949 23 F -0.142 7.142 24 H 0.098 0.902 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.030 0.970 30 H 0.002 0.998 31 H 0.268 0.732 32 H 0.416 0.584 33 H 0.127 0.873 34 H 0.149 0.851 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.429 -4.865 19.823 21.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.344 5.344 4 C 0.158 3.842 5 C -0.584 4.584 6 H 0.067 0.933 7 C -0.188 4.188 8 N -0.565 5.565 9 Si 0.791 3.209 10 H -0.187 1.187 11 H -0.204 1.204 12 H -0.202 1.202 13 C 0.398 3.602 14 O -0.492 6.492 15 N -0.325 5.325 16 C 0.022 3.978 17 C -0.148 4.148 18 C -0.125 4.125 19 C -0.082 4.082 20 C -0.164 4.164 21 C -0.146 4.146 22 C 0.029 3.971 23 F -0.121 7.121 24 H 0.117 0.883 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.048 0.952 30 H 0.020 0.980 31 H 0.077 0.923 32 H 0.255 0.745 33 H 0.145 0.855 34 H 0.167 0.833 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -5.179 -4.053 19.507 20.586 hybrid contribution 0.745 -0.644 -1.106 1.481 sum -4.435 -4.698 18.401 19.502 Atomic orbital electron populations 1.22155 0.94218 1.03711 1.01754 1.21718 0.95577 0.81426 1.03661 1.47532 1.66920 1.15168 1.04770 1.18692 0.95309 0.91503 0.78741 1.21700 0.97961 1.32167 1.06583 0.93276 1.25790 1.02232 0.94401 0.96330 1.70036 1.37668 1.34072 1.14728 0.85439 0.79116 0.78300 0.78079 1.18739 1.20436 1.20226 1.16033 0.78733 0.84512 0.80933 1.90817 1.53298 1.18784 1.86274 1.42586 1.72601 1.14549 1.02756 1.17871 1.02828 0.92927 0.84155 1.21362 1.00983 0.92267 1.00160 1.21280 0.99213 1.01236 0.90741 1.20091 0.98531 0.92755 0.96868 1.20828 1.03641 0.99989 0.91893 1.21126 1.02446 0.94704 0.96313 1.17471 1.08207 0.77365 0.94083 1.91443 1.93687 1.29727 1.97271 0.88290 0.92946 0.93462 0.89791 0.89721 0.95177 0.97955 0.92315 0.74486 0.85531 0.83315 0.89431 0.89974 0.90482 0.81653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.15 10.24 71.98 0.74 -3.41 16 2 C 0.10 3.14 5.94 86.38 0.51 3.65 16 3 N -0.61 -26.83 2.46 -844.18 -2.07 -28.90 16 4 C 0.28 15.17 5.16 85.63 0.44 15.62 16 5 C -0.55 -31.88 9.39 25.60 0.24 -31.64 16 6 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 7 C 0.01 0.68 5.46 84.66 0.46 1.15 16 8 N -0.93 -55.93 13.29 21.45 0.28 -55.64 16 9 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 C 0.70 31.22 8.08 179.06 1.45 32.67 16 14 O -0.61 -32.72 13.09 -4.00 -0.05 -32.78 16 15 N -0.68 -23.78 5.19 -316.99 -1.65 -25.43 16 16 C 0.12 3.97 6.44 38.15 0.25 4.21 16 17 C -0.13 -4.28 8.72 22.38 0.20 -4.08 16 18 C -0.11 -2.66 9.69 22.26 0.22 -2.45 16 19 C -0.08 -1.64 5.88 -19.85 -0.12 -1.75 16 20 C -0.11 -1.27 10.01 71.23 0.71 -0.56 16 21 C -0.13 -2.71 9.67 22.29 0.22 -2.49 16 22 C 0.05 1.41 7.31 22.48 0.16 1.57 16 23 F -0.14 -3.84 16.81 44.97 0.76 -3.08 16 24 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.08 2.75 8.07 -2.38 -0.02 2.73 16 28 H 0.08 2.21 6.29 -2.39 -0.02 2.19 16 29 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 30 H 0.00 0.14 7.42 -2.39 -0.02 0.13 16 31 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.42 12.08 6.15 -92.71 -0.57 11.51 16 33 H 0.13 5.13 5.79 -2.91 -0.02 5.12 16 34 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 35 H 0.09 0.80 8.14 -2.38 -0.02 0.79 16 36 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 37 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 38 H 0.17 2.45 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -73.61 326.44 5.28 -68.33 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.51 Total: 17.54 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 5.47 Total: 12.48 kcal Atomic # 7 Polarization: -106.54 SS G_CDS: -3.43 Total: -109.97 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.05 Total: -32.78 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.76 Total: -3.08 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -73.61 5.28 -68.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080163492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.681 kcal (2) G-P(sol) polarization free energy of solvation -73.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds