Wall clock time and date at job start Tue Mar 31 2020 02:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46489 * 109.47796 * 2 1 4 4 C 1.46507 * 120.00247 * 270.00416 * 3 2 1 5 5 C 1.50705 * 109.46754 * 269.99858 * 4 3 2 6 6 H 1.08000 * 119.99886 * 359.97438 * 5 4 3 7 7 C 1.37869 * 119.99971 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00446 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99981 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47201 * 90.00018 * 9 7 5 11 11 H 1.48496 * 109.47098 * 209.99648 * 9 7 5 12 12 H 1.48494 * 109.47114 * 329.99666 * 9 7 5 13 13 C 1.34784 * 120.00277 * 89.99528 * 3 2 1 14 14 O 1.21586 * 119.99965 * 180.02562 * 13 3 2 15 15 N 1.34777 * 119.99772 * 0.02562 * 13 3 2 16 16 C 1.40072 * 119.99783 * 184.43277 * 15 13 3 17 17 C 1.38803 * 120.08004 * 325.34883 * 16 15 13 18 18 C 1.38145 * 119.95685 * 179.97438 * 17 16 15 19 19 C 1.50694 * 119.94599 * 180.02562 * 18 17 16 20 20 C 1.38283 * 120.10874 * 359.72799 * 18 17 16 21 21 C 1.38265 * 120.15517 * 0.55108 * 20 18 17 22 22 C 1.38313 * 120.04347 * 359.45011 * 21 20 18 23 23 F 1.35101 * 120.05449 * 180.25539 * 22 21 20 24 24 H 1.08998 * 109.46659 * 300.00455 * 1 2 3 25 25 H 1.09001 * 109.46644 * 60.00071 * 1 2 3 26 26 H 1.09000 * 109.47273 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47112 * 239.99365 * 2 1 3 28 28 H 1.09006 * 109.47070 * 120.00060 * 2 1 3 29 29 H 1.08998 * 109.46676 * 29.98836 * 4 3 2 30 30 H 1.08992 * 109.47761 * 149.99638 * 4 3 2 31 31 H 0.96996 * 120.00902 * 180.02562 * 8 7 5 32 32 H 0.97000 * 120.00052 * 4.43164 * 15 13 3 33 33 H 1.07999 * 120.01899 * 359.95760 * 17 16 15 34 34 H 1.09001 * 109.47520 * 89.99936 * 19 18 17 35 35 H 1.09006 * 109.47649 * 210.00501 * 19 18 17 36 36 H 1.09009 * 109.47222 * 330.00144 * 19 18 17 37 37 H 1.08002 * 119.92085 * 180.27253 * 20 18 17 38 38 H 1.07999 * 119.98237 * 179.72483 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2627 2.0717 -1.2688 5 6 3.6860 1.8348 -1.7038 6 1 4.3430 1.2305 -1.0958 7 6 4.1493 2.3893 -2.8779 8 7 5.3915 2.1830 -3.2574 9 14 3.0127 3.4339 -3.9299 10 1 3.1152 4.8544 -3.5091 11 1 3.4062 3.3106 -5.3564 12 1 1.6133 2.9670 -3.7603 13 6 2.2431 2.0165 1.1672 14 8 2.6481 3.1629 1.1672 15 7 2.0188 1.3810 2.3344 16 6 2.1629 2.0697 3.5457 17 6 3.1401 3.0463 3.6787 18 6 3.2795 3.7243 4.8743 19 6 4.3402 4.7850 5.0183 20 6 2.4434 3.4355 5.9371 21 6 1.4721 2.4595 5.8115 22 6 1.3269 1.7767 4.6174 23 9 0.3746 0.8266 4.4927 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.5819 1.6876 -2.0284 30 1 2.0958 3.1409 -1.1385 31 1 5.7177 2.5734 -4.0832 32 1 1.7577 0.4469 2.3357 33 1 3.7912 3.2759 2.8482 34 1 3.9292 5.7518 4.7276 35 1 4.6723 4.8284 6.0556 36 1 5.1867 4.5421 4.3758 37 1 2.5522 3.9705 6.8690 38 1 0.8235 2.2331 6.6448 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080164401.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:56 Heat of formation + Delta-G solvation = -64.105781 kcal Electronic energy + Delta-G solvation = -21999.671651 eV Core-core repulsion = 18563.075779 eV Total energy + Delta-G solvation = -3436.595871 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.89565 -41.76684 -39.85849 -37.22290 -36.15148 -34.77763 -33.10630 -31.92517 -31.09176 -29.20987 -27.55174 -25.09996 -24.47537 -23.66711 -22.36952 -20.92462 -19.45033 -19.12362 -18.46113 -18.05316 -17.33676 -16.83240 -16.58781 -16.41523 -15.69137 -15.36699 -15.18733 -14.93505 -14.84731 -14.55348 -14.43609 -14.35835 -13.88385 -13.51911 -13.22005 -13.02306 -12.87060 -12.70844 -12.65268 -12.45735 -12.36895 -12.09146 -12.00826 -11.75284 -11.41792 -11.01274 -10.83271 -9.74039 -9.54625 -9.04357 -8.34312 -6.39709 0.10117 0.25525 1.32440 1.37118 1.44993 1.56929 2.05001 2.30693 2.64166 2.83587 3.00668 3.20305 3.77884 3.91207 3.96450 4.22140 4.28104 4.29770 4.43216 4.47011 4.67766 4.76989 4.82511 4.86154 4.89988 4.92017 4.94749 5.10292 5.18702 5.28840 5.29762 5.40094 5.43707 5.52580 5.63515 5.85925 5.99623 6.24604 6.61131 6.87224 7.21557 7.48197 8.82737 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.019324 B = 0.005168 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.596738 B = 5416.673813 C = 6465.340581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.608 5.608 4 C 0.242 3.758 5 C -0.537 4.537 6 H 0.027 0.973 7 C 0.014 3.986 8 N -0.945 5.945 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.274 1.274 12 H -0.237 1.237 13 C 0.698 3.302 14 O -0.612 6.612 15 N -0.679 5.679 16 C 0.122 3.878 17 C -0.125 4.125 18 C -0.079 4.079 19 C -0.112 4.112 20 C -0.103 4.103 21 C -0.121 4.121 22 C 0.047 3.953 23 F -0.142 7.142 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.021 0.979 31 H 0.269 0.731 32 H 0.416 0.584 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.172 0.828 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.977 -1.795 18.376 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.342 5.342 4 C 0.120 3.880 5 C -0.575 4.575 6 H 0.045 0.955 7 C -0.185 4.185 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.199 1.199 12 H -0.160 1.160 13 C 0.400 3.600 14 O -0.492 6.492 15 N -0.329 5.329 16 C 0.026 3.974 17 C -0.146 4.146 18 C -0.080 4.080 19 C -0.169 4.169 20 C -0.122 4.122 21 C -0.140 4.140 22 C 0.025 3.975 23 F -0.120 7.120 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.256 0.744 33 H 0.132 0.868 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.074 0.926 37 H 0.190 0.810 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.629 -1.039 18.098 21.014 hybrid contribution 0.050 -0.314 -1.198 1.239 sum -10.579 -1.353 16.900 19.984 Atomic orbital electron populations 1.22162 0.93838 1.03832 1.02002 1.21738 0.95716 0.81194 1.03762 1.47252 1.67362 1.15227 1.04377 1.19274 0.94972 0.92847 0.80928 1.21546 0.97006 1.32240 1.06727 0.95462 1.25813 0.96699 0.97094 0.98852 1.70044 1.17426 1.46528 1.24506 0.85726 0.80481 0.79010 0.77795 1.20196 1.19936 1.16049 1.16031 0.78654 0.84362 0.80988 1.90841 1.53145 1.18884 1.86343 1.42527 1.72997 1.14784 1.02601 1.17805 0.96561 0.97960 0.85100 1.21161 0.97454 0.97362 0.98623 1.20202 0.98251 0.97337 0.92244 1.20842 0.95738 0.96210 1.04100 1.21257 0.94040 0.97310 0.99569 1.21322 1.00562 0.96330 0.95738 1.17600 0.89912 0.93993 0.95952 1.91447 1.61773 1.62180 1.96635 0.93074 0.92751 0.88360 0.89694 0.89984 0.92735 0.96136 0.92229 0.74449 0.86763 0.90498 0.88246 0.92615 0.81017 0.81101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 10.24 71.98 0.74 -3.11 16 2 C 0.10 3.02 5.93 86.38 0.51 3.53 16 3 N -0.61 -25.72 2.46 -844.18 -2.07 -27.80 16 4 C 0.24 11.96 4.23 85.63 0.36 12.33 16 5 C -0.54 -31.85 9.94 25.60 0.25 -31.59 16 6 H 0.03 1.82 8.06 -2.91 -0.02 1.79 16 7 C 0.01 0.80 5.47 84.65 0.46 1.27 16 8 N -0.94 -60.01 13.96 21.44 0.30 -59.71 16 9 Si 0.95 44.53 27.47 68.60 1.88 46.42 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 13 C 0.70 30.66 8.13 179.05 1.45 32.11 16 14 O -0.61 -32.03 13.34 -3.99 -0.05 -32.08 16 15 N -0.68 -23.61 5.11 -316.99 -1.62 -25.23 16 16 C 0.12 4.01 6.31 38.15 0.24 4.25 16 17 C -0.13 -4.28 8.35 22.38 0.19 -4.10 16 18 C -0.08 -1.99 5.88 -19.88 -0.12 -2.11 16 19 C -0.11 -2.27 10.01 71.23 0.71 -1.55 16 20 C -0.10 -1.90 9.69 22.29 0.22 -1.68 16 21 C -0.12 -2.34 10.02 22.29 0.22 -2.12 16 22 C 0.05 1.25 7.31 22.48 0.16 1.41 16 23 F -0.14 -3.62 16.96 44.97 0.76 -2.85 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 2.71 8.07 -2.39 -0.02 2.69 16 28 H 0.08 2.13 6.30 -2.38 -0.02 2.11 16 29 H 0.05 2.45 7.13 -2.39 -0.02 2.43 16 30 H 0.02 1.09 6.85 -2.39 -0.02 1.07 16 31 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 32 H 0.42 11.92 6.36 -92.71 -0.59 11.33 16 33 H 0.11 4.84 6.20 -2.91 -0.02 4.82 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.10 1.32 8.09 -2.38 -0.02 1.31 16 36 H 0.05 1.28 8.08 -2.38 -0.02 1.26 16 37 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 38 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -77.56 323.67 5.04 -72.52 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.43 Total: 20.09 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 5.41 Total: 8.64 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -3.39 Total: -112.73 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.05 Total: -32.08 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.76 Total: -2.85 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.42 kcal Total: -77.56 5.04 -72.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080164401.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.410 kcal (2) G-P(sol) polarization free energy of solvation -77.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds