Wall clock time and date at job start Tue Mar 31 2020 01:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46771 * 2 1 4 4 C 1.53000 * 109.46772 * 119.99517 * 2 1 3 5 5 N 1.46502 * 109.46851 * 177.80035 * 4 2 1 6 6 C 1.46499 * 120.00343 * 268.45554 * 5 4 2 7 7 C 1.50701 * 109.46909 * 278.99270 * 6 5 4 8 8 H 1.07991 * 120.00074 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99837 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00059 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 120.00059 * 359.97438 * 9 7 6 12 12 H 1.48493 * 109.47192 * 89.99985 * 11 9 7 13 13 H 1.48502 * 109.47032 * 210.00592 * 11 9 7 14 14 H 1.48503 * 109.47229 * 330.00364 * 11 9 7 15 15 C 1.34773 * 119.99989 * 88.45380 * 5 4 2 16 16 O 1.21528 * 120.00102 * 6.97206 * 15 5 4 17 17 C 1.47999 * 120.00198 * 186.97359 * 15 5 4 18 18 C 1.39903 * 120.94037 * 328.85247 * 17 15 5 19 19 C 1.38038 * 119.03307 * 180.02562 * 18 17 15 20 20 N 1.31864 * 120.98391 * 359.97438 * 19 18 17 21 21 C 1.31718 * 122.09085 * 359.72702 * 20 19 18 22 22 C 1.38533 * 120.84824 * 0.54123 * 21 20 19 23 23 F 1.35106 * 120.53401 * 179.74938 * 22 21 20 24 24 H 1.09001 * 109.47456 * 299.99849 * 1 2 3 25 25 H 1.09003 * 109.47000 * 60.00143 * 1 2 3 26 26 H 1.09001 * 109.46837 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46960 * 240.00150 * 2 1 3 28 28 H 1.08998 * 109.46991 * 185.28764 * 3 2 1 29 29 H 1.09000 * 109.47596 * 305.28639 * 3 2 1 30 30 H 1.09002 * 109.47464 * 65.29078 * 3 2 1 31 31 H 1.08998 * 109.47042 * 57.80519 * 4 2 1 32 32 H 1.08994 * 109.47850 * 297.80239 * 4 2 1 33 33 H 1.09010 * 109.47126 * 38.98806 * 6 5 4 34 34 H 1.08994 * 109.47716 * 158.98601 * 6 5 4 35 35 H 0.96997 * 120.00014 * 179.97438 * 10 9 7 36 36 H 1.07998 * 120.47908 * 0.02562 * 18 17 15 37 37 H 1.08001 * 119.50726 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.57336 * 180.29191 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.7673 1.2231 6 6 4.1902 -1.9127 0.6204 7 6 4.2309 -3.0503 1.6079 8 1 3.7902 -2.9319 2.5866 9 6 4.8318 -4.2422 1.2621 10 7 4.8678 -5.2348 2.1240 11 14 5.5948 -4.4469 -0.4307 12 1 7.0188 -4.0282 -0.3857 13 1 5.5102 -5.8710 -0.8429 14 1 4.8619 -3.6040 -1.4093 15 6 4.2196 0.2441 1.7535 16 8 3.6572 1.1313 2.3647 17 6 5.6904 0.2745 1.5917 18 6 6.4294 -0.9105 1.5082 19 6 7.7996 -0.8363 1.3581 20 7 8.4133 0.3290 1.2926 21 6 7.7581 1.4697 1.3610 22 6 6.3818 1.4901 1.5173 23 9 5.7167 2.6637 1.5917 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1258 1.4440 -0.0947 29 1 1.6013 1.9830 -0.8388 30 1 1.7560 1.9283 0.9336 31 1 1.6448 -1.7368 1.2693 32 1 1.7092 -0.1851 2.1388 33 1 3.6538 -2.2276 -0.2749 34 1 5.2075 -1.6272 0.3527 35 1 5.2903 -6.0734 1.8806 36 1 5.9351 -1.8693 1.5605 37 1 8.3777 -1.7463 1.2932 38 1 8.3014 2.4010 1.2983 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086316334.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:43 Heat of formation + Delta-G solvation = -44.811849 kcal Electronic energy + Delta-G solvation = -22831.917805 eV Core-core repulsion = 19396.158581 eV Total energy + Delta-G solvation = -3435.759224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.08292 -41.83972 -40.32281 -37.60926 -36.24543 -34.43594 -33.45352 -31.99922 -30.16362 -28.15443 -27.74675 -25.56733 -24.47410 -24.34441 -21.69270 -20.55377 -19.11846 -18.77035 -18.57598 -18.30431 -17.32379 -16.91244 -16.57069 -16.36293 -15.88261 -15.72073 -15.51031 -14.96570 -14.68605 -14.65030 -14.40335 -14.24859 -13.81658 -13.40076 -13.26500 -12.95713 -12.79520 -12.74897 -12.50234 -12.27621 -11.93483 -11.88717 -11.73483 -11.62642 -11.37341 -11.02424 -10.79952 -10.46036 -10.03862 -9.52603 -8.35540 -6.46055 -0.51077 -0.16638 1.39114 1.43431 1.51305 1.66430 2.00189 2.30331 2.54227 2.86242 2.96747 3.24774 3.39288 3.67040 3.72717 3.88284 3.97458 4.12400 4.40342 4.43776 4.53494 4.61392 4.64079 4.72735 4.78424 4.81134 4.89295 4.92726 4.96323 5.02723 5.15273 5.30082 5.36392 5.41008 5.48059 5.60039 6.07354 6.44847 6.62145 6.64653 7.01954 7.20517 8.79379 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.011271 B = 0.009887 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.728710 B = 2831.216247 C = 4749.739056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C -0.130 4.130 4 C 0.120 3.880 5 N -0.580 5.580 6 C 0.189 3.811 7 C -0.546 4.546 8 H 0.035 0.965 9 C 0.036 3.964 10 N -0.926 5.926 11 Si 0.919 3.081 12 H -0.241 1.241 13 H -0.283 1.283 14 H -0.244 1.244 15 C 0.553 3.447 16 O -0.567 6.567 17 C -0.141 4.141 18 C -0.136 4.136 19 C 0.081 3.919 20 N -0.448 5.448 21 C 0.075 3.925 22 C 0.083 3.917 23 F -0.123 7.123 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.024 0.976 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.273 0.727 36 H 0.187 0.813 37 H 0.191 0.809 38 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.305 9.296 -7.564 12.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 C -0.187 4.187 4 C -0.002 4.002 5 N -0.308 5.308 6 C 0.068 3.932 7 C -0.584 4.584 8 H 0.053 0.947 9 C -0.166 4.166 10 N -0.564 5.564 11 Si 0.740 3.260 12 H -0.164 1.164 13 H -0.209 1.209 14 H -0.167 1.167 15 C 0.342 3.658 16 O -0.448 6.448 17 C -0.153 4.153 18 C -0.155 4.155 19 C -0.075 4.075 20 N -0.156 5.156 21 C -0.084 4.084 22 C 0.060 3.940 23 F -0.101 7.101 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.203 0.797 37 H 0.207 0.793 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 1.907 9.593 -7.310 12.211 hybrid contribution -0.932 -0.538 0.057 1.078 sum 0.975 9.055 -7.253 11.643 Atomic orbital electron populations 1.21706 0.92418 1.02547 1.02638 1.21484 0.97632 0.96084 0.97409 1.21715 0.99275 0.96078 1.01662 1.21622 0.78379 1.01386 0.98851 1.47797 1.07237 1.19296 1.56465 1.20505 0.95189 0.83477 0.94052 1.21296 1.38966 0.97474 1.00656 0.94691 1.25683 0.95473 0.94602 1.00822 1.70018 1.43949 1.04927 1.37500 0.86139 0.81282 0.78629 0.79946 1.16443 1.20884 1.16728 1.18151 0.86477 0.82012 0.79193 1.90706 1.72172 1.39206 1.42733 1.20676 0.94907 0.94335 1.05378 1.23919 0.96362 1.00845 0.94394 1.23208 0.91405 0.96937 0.95933 1.67663 1.39828 0.98207 1.09897 1.23360 0.87895 0.99145 0.97999 1.19075 0.92359 0.80441 1.02107 1.91536 1.81071 1.44355 1.93135 0.92542 0.90799 0.91857 0.91026 0.95666 0.91170 0.93475 0.90109 0.91608 0.93891 0.91617 0.91738 0.79653 0.79256 0.77561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.19 71.98 0.66 -2.43 16 2 C -0.11 -3.12 3.15 -10.79 -0.03 -3.15 16 3 C -0.13 -3.96 7.85 71.98 0.57 -3.40 16 4 C 0.12 4.33 5.05 86.38 0.44 4.77 16 5 N -0.58 -23.55 2.35 -829.41 -1.95 -25.49 16 6 C 0.19 7.83 3.72 85.63 0.32 8.14 16 7 C -0.55 -27.15 8.12 25.60 0.21 -26.95 16 8 H 0.03 2.04 8.06 -2.92 -0.02 2.02 16 9 C 0.04 1.79 5.36 84.66 0.45 2.24 16 10 N -0.93 -51.02 13.96 21.45 0.30 -50.72 16 11 Si 0.92 35.89 27.38 68.60 1.88 37.77 16 12 H -0.24 -8.46 7.11 99.48 0.71 -7.75 16 13 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 14 H -0.24 -8.81 6.54 99.48 0.65 -8.16 16 15 C 0.55 23.33 5.72 86.83 0.50 23.83 16 16 O -0.57 -25.92 14.08 -3.80 -0.05 -25.98 16 17 C -0.14 -5.36 5.59 -19.85 -0.11 -5.47 16 18 C -0.14 -4.89 7.58 22.63 0.17 -4.72 16 19 C 0.08 2.44 11.17 84.64 0.95 3.39 16 20 N -0.45 -12.79 10.33 -195.82 -2.02 -14.82 16 21 C 0.08 2.00 11.17 84.78 0.95 2.95 16 22 C 0.08 2.74 7.29 22.78 0.17 2.91 16 23 F -0.12 -4.24 16.17 44.97 0.73 -3.52 16 24 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 28 H 0.02 0.86 6.55 -2.39 -0.02 0.84 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.05 1.56 7.64 -2.39 -0.02 1.54 16 31 H 0.08 2.95 8.06 -2.39 -0.02 2.93 16 32 H 0.07 2.50 7.38 -2.39 -0.02 2.49 16 33 H 0.04 1.72 7.19 -2.38 -0.02 1.70 16 34 H 0.07 2.59 3.44 -2.39 -0.01 2.58 16 35 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 36 H 0.19 7.58 3.30 -2.91 -0.01 7.57 16 37 H 0.19 4.73 8.06 -2.91 -0.02 4.71 16 38 H 0.21 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -61.13 312.72 5.13 -56.01 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 1.02 Total: 24.63 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 5.22 Total: 2.12 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -3.67 Total: -91.03 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.05 Total: -25.98 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.73 Total: -3.52 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 1.88 Total: 37.77 kcal Total: -61.13 5.13 -56.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086316334.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.194 kcal (2) G-P(sol) polarization free energy of solvation -61.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds