Wall clock time and date at job start Tue Mar 31 2020 01:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47028 * 2 1 4 4 N 1.46500 * 109.46788 * 180.02562 * 3 2 1 5 5 C 1.36940 * 120.00233 * 90.12876 * 4 3 2 6 6 H 1.07991 * 120.00087 * 218.56537 * 5 4 3 7 7 C 1.38810 * 119.99906 * 38.56522 * 5 4 3 8 8 N 1.31611 * 120.00251 * 214.88438 * 7 5 4 9 9 Si 1.86809 * 119.99873 * 34.88539 * 7 5 4 10 10 H 1.48497 * 109.46878 * 84.75719 * 9 7 5 11 11 H 1.48504 * 109.46947 * 204.75354 * 9 7 5 12 12 H 1.48501 * 109.47145 * 324.75410 * 9 7 5 13 13 C 1.46501 * 120.00101 * 270.39790 * 4 3 2 14 14 C 1.50696 * 109.47397 * 273.73831 * 13 4 3 15 15 C 1.33647 * 126.03579 * 94.40650 * 14 13 4 16 16 N 1.31784 * 114.49823 * 180.02562 * 15 14 13 17 17 C 1.29028 * 117.12413 * 359.97438 * 16 15 14 18 18 C 1.50701 * 124.91751 * 180.02562 * 17 16 15 19 19 C 1.53784 * 113.61132 * 39.10860 * 18 17 16 20 20 C 1.53955 * 87.02196 * 220.04665 * 19 18 17 21 21 C 1.53782 * 113.61584 * 301.50593 * 18 17 16 22 22 S 1.70978 * 110.16951 * 359.72902 * 17 16 15 23 23 H 1.08998 * 109.47518 * 59.99727 * 1 2 3 24 24 H 1.09000 * 109.47031 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46921 * 299.99529 * 1 2 3 26 26 H 1.09002 * 109.46921 * 240.00471 * 2 1 3 27 27 H 1.08998 * 109.47518 * 120.00273 * 2 1 3 28 28 H 1.08993 * 109.46989 * 60.00430 * 3 2 1 29 29 H 1.09003 * 109.47033 * 300.00003 * 3 2 1 30 30 H 0.97000 * 120.00551 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.46791 * 33.73926 * 13 4 3 32 32 H 1.08997 * 109.47201 * 153.73337 * 13 4 3 33 33 H 1.07996 * 122.75499 * 359.97438 * 15 14 13 34 34 H 1.08997 * 112.85513 * 170.30745 * 18 17 16 35 35 H 1.08989 * 113.61718 * 334.57319 * 19 18 17 36 36 H 1.09003 * 113.60772 * 105.47361 * 19 18 17 37 37 H 1.09000 * 113.54189 * 270.81462 * 20 19 18 38 38 H 1.08997 * 113.74012 * 139.94261 * 20 19 18 39 39 H 1.08998 * 113.61731 * 254.53099 * 21 18 17 40 40 H 1.09004 * 113.61402 * 25.43103 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1892 1.4453 -1.1868 6 1 5.0924 0.8625 -1.2906 7 6 3.7218 2.1973 -2.2559 8 7 3.8694 1.7545 -3.4864 9 14 2.8833 3.8380 -1.9479 10 1 3.9105 4.9034 -1.8250 11 1 1.9780 4.1518 -3.0824 12 1 2.0951 3.7630 -0.6916 13 6 4.2380 1.4335 1.2678 14 6 4.4093 2.8477 1.7591 15 6 3.6084 3.4835 2.6197 16 7 3.9719 4.7204 2.8929 17 6 5.0351 5.1631 2.3112 18 6 5.6076 6.5449 2.4960 19 6 5.5265 7.0566 3.9439 20 6 5.1579 8.4297 3.3531 21 6 4.6297 7.6718 2.1236 22 16 5.7051 3.9526 1.3067 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.5425 2.2797 -4.2335 31 1 3.6798 0.8574 2.0059 32 1 5.2177 0.9797 1.1180 33 1 2.7344 3.0218 3.0549 34 1 6.5947 6.6576 2.0477 35 1 4.7240 6.6011 4.5238 36 1 6.4842 7.0472 4.4645 37 1 6.0226 9.0583 3.1402 38 1 4.3810 8.9530 3.9104 39 1 4.8642 8.1582 1.1768 40 1 3.5813 7.3847 2.2049 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398483.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:51 Heat of formation + Delta-G solvation = 73.241250 kcal Electronic energy + Delta-G solvation = -19966.866967 eV Core-core repulsion = 17102.440086 eV Total energy + Delta-G solvation = -2864.426881 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.62288 -37.97489 -36.42785 -32.78395 -32.10018 -30.07403 -27.59170 -25.73919 -25.58633 -24.88222 -23.13724 -21.72932 -20.60787 -20.03412 -18.12461 -17.53967 -16.83183 -15.62248 -15.33195 -14.90500 -14.63719 -14.09247 -14.03812 -13.74417 -13.24172 -12.98507 -12.68418 -12.47596 -12.38937 -12.19422 -11.99860 -11.73878 -11.22685 -11.15587 -10.89379 -10.78859 -10.70071 -10.50676 -10.42353 -10.30548 -10.20053 -9.85150 -9.51923 -9.01692 -8.64963 -8.49714 -8.16472 -6.97236 -6.22820 -3.47534 1.29688 1.98640 2.45342 3.30999 3.36308 3.42542 3.51486 4.45385 4.45573 4.68909 4.71453 4.88784 4.89931 4.94824 5.24099 5.54970 5.60901 5.66249 5.68930 5.76436 5.83833 5.85191 5.86457 5.88878 5.98267 6.00269 6.15564 6.18819 6.28006 6.43876 6.44673 6.51594 6.57104 6.60834 6.78213 6.95808 7.11985 7.88888 8.25084 8.29472 8.85902 9.56906 10.00399 10.91708 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.019653 B = 0.005836 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.365141 B = 4796.653165 C = 5251.152983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.150 3.850 4 N -0.586 5.586 5 C -0.278 4.278 6 H 0.079 0.921 7 C 0.059 3.941 8 N -0.868 5.868 9 Si 0.838 3.162 10 H -0.282 1.282 11 H -0.295 1.295 12 H -0.261 1.261 13 C 0.208 3.792 14 C -0.196 4.196 15 C 0.001 3.999 16 N -0.469 5.469 17 C 0.016 3.984 18 C -0.035 4.035 19 C -0.119 4.119 20 C -0.141 4.141 21 C -0.125 4.125 22 S 0.121 5.879 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.035 0.965 29 H 0.053 0.947 30 H 0.266 0.734 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.163 0.837 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.129 6.327 11.982 13.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 C 0.024 3.976 4 N -0.305 5.305 5 C -0.406 4.406 6 H 0.096 0.904 7 C -0.146 4.146 8 N -0.505 5.505 9 Si 0.665 3.335 10 H -0.209 1.209 11 H -0.221 1.221 12 H -0.186 1.186 13 C 0.079 3.921 14 C -0.321 4.321 15 C -0.150 4.150 16 N -0.184 5.184 17 C -0.261 4.261 18 C -0.057 4.057 19 C -0.158 4.158 20 C -0.179 4.179 21 C -0.164 4.164 22 S 0.377 5.623 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.180 0.820 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.704 6.578 11.452 13.316 hybrid contribution -1.333 0.762 0.168 1.545 sum 0.371 7.340 11.620 13.749 Atomic orbital electron populations 1.21732 0.97295 1.00578 1.01025 1.22014 0.93775 1.00073 1.01948 1.21178 0.83334 0.93877 0.99186 1.44430 1.00794 1.84110 1.01162 1.18671 1.11520 1.23905 0.86531 0.90374 1.25467 0.96927 0.97363 0.94804 1.70045 1.45303 1.36267 0.98915 0.87590 0.79707 0.88035 0.78198 1.20915 1.22142 1.18571 1.19708 0.97536 0.86291 0.88550 1.27575 0.98075 1.05513 1.00960 1.21406 1.02346 0.89861 1.01388 1.65987 1.13763 1.13788 1.24824 1.26519 0.97896 1.01341 1.00336 1.21126 0.98785 0.86920 0.98861 1.22927 1.02214 0.95730 0.94904 1.22837 1.00992 0.96386 0.97637 1.22938 0.99809 0.95464 0.98157 1.84063 1.28045 1.05899 1.44322 0.93138 0.93510 0.93598 0.91238 0.93168 0.94704 0.92840 0.92427 0.91832 0.91435 0.82012 0.87893 0.88921 0.91529 0.90241 0.91281 0.91359 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 37.16 0.37 -1.92 16 2 C -0.14 -2.55 6.26 -26.73 -0.17 -2.72 16 3 C 0.15 3.17 4.18 -4.04 -0.02 3.15 16 4 N -0.59 -13.22 2.01 -174.61 -0.35 -13.57 16 5 C -0.28 -7.34 9.73 -15.06 -0.15 -7.48 16 6 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 7 C 0.06 1.63 5.00 -17.43 -0.09 1.55 16 8 N -0.87 -25.36 13.97 55.49 0.78 -24.58 16 9 Si 0.84 21.58 26.60 -169.99 -4.52 17.06 16 10 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 11 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 12 H -0.26 -6.60 5.75 56.52 0.32 -6.27 16 13 C 0.21 3.98 6.20 -5.20 -0.03 3.95 16 14 C -0.20 -3.75 6.18 -35.92 -0.22 -3.97 16 15 C 0.00 0.02 11.25 -19.18 -0.22 -0.20 16 16 N -0.47 -8.66 10.08 -11.86 -0.12 -8.78 16 17 C 0.02 0.28 6.47 -13.46 -0.09 0.19 16 18 C -0.04 -0.48 4.24 -90.96 -0.39 -0.87 16 19 C -0.12 -1.39 7.62 -25.83 -0.20 -1.59 16 20 C -0.14 -1.46 8.09 -25.83 -0.21 -1.67 16 21 C -0.12 -1.62 7.63 -25.92 -0.20 -1.82 16 22 S 0.12 2.25 23.18 -107.50 -2.49 -0.24 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.03 0.69 8.08 -51.93 -0.42 0.27 16 29 H 0.05 1.26 4.53 -51.93 -0.24 1.02 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 32 H 0.07 1.28 8.01 -51.93 -0.42 0.87 16 33 H 0.16 2.67 8.06 -52.49 -0.42 2.24 16 34 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.09 1.22 7.74 -51.94 -0.40 0.82 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.09 1.29 8.09 -51.93 -0.42 0.87 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -29.28 338.96 -9.79 -39.07 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.60 Total: -0.67 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -1.60 Total: -13.40 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.30 Total: -46.93 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.52 Total: 17.06 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -2.49 Total: -0.24 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.28 -9.79 -39.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398483.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.313 kcal (2) G-P(sol) polarization free energy of solvation -29.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds