Wall clock time and date at job start Tue Mar 31 2020 02:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47431 * 2 1 4 4 C 1.36937 * 120.00113 * 264.17087 * 3 2 1 5 5 H 1.07991 * 119.99861 * 188.26266 * 4 3 2 6 6 C 1.38814 * 119.99646 * 8.26259 * 4 3 2 7 7 N 1.31620 * 120.00304 * 25.12636 * 6 4 3 8 8 Si 1.86797 * 119.99861 * 205.11791 * 6 4 3 9 9 H 1.48506 * 109.46686 * 84.99496 * 8 6 4 10 10 H 1.48497 * 109.47614 * 204.99310 * 8 6 4 11 11 H 1.48496 * 109.47236 * 325.00120 * 8 6 4 12 12 C 1.46494 * 119.99710 * 84.17135 * 3 2 1 13 13 C 1.50702 * 109.47298 * 269.99983 * 12 3 2 14 14 N 1.28673 * 124.92985 * 89.69684 * 13 12 3 15 15 C 1.32524 * 117.88158 * 180.26202 * 14 13 12 16 16 C 1.34610 * 113.15127 * 0.02628 * 15 14 13 17 17 S 1.70910 * 124.92930 * 270.00482 * 13 12 3 18 18 C 1.51004 * 125.22307 * 179.97438 * 16 15 14 19 19 C 1.53281 * 108.58014 * 343.93983 * 18 16 15 20 20 H 1.09006 * 109.54716 * 289.41299 * 19 18 16 21 21 C 1.52998 * 109.55142 * 169.22582 * 19 18 16 22 22 C 1.53143 * 108.99495 * 49.26828 * 19 18 16 23 23 C 1.52124 * 124.20323 * 180.02562 * 15 14 13 24 24 H 1.09003 * 109.46795 * 60.00094 * 1 2 3 25 25 H 1.09000 * 109.47255 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46954 * 300.00212 * 1 2 3 27 27 H 1.09004 * 109.47175 * 240.00011 * 2 1 3 28 28 H 1.08999 * 109.47242 * 120.00097 * 2 1 3 29 29 H 0.96999 * 119.99892 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47291 * 150.00594 * 12 3 2 31 31 H 1.08998 * 109.47743 * 30.00389 * 12 3 2 32 32 H 1.08996 * 109.61872 * 103.66084 * 18 16 15 33 33 H 1.08997 * 109.61824 * 224.20974 * 18 16 15 34 34 H 1.09003 * 109.47403 * 59.99561 * 21 19 18 35 35 H 1.08992 * 109.47409 * 179.97438 * 21 19 18 36 36 H 1.09001 * 109.46943 * 300.00194 * 21 19 18 37 37 H 1.09002 * 109.47432 * 49.61235 * 22 19 18 38 38 H 1.09005 * 109.47027 * 169.61853 * 22 19 18 39 39 H 1.08994 * 109.59324 * 42.70278 * 23 15 14 40 40 H 1.08996 * 109.59398 * 282.24638 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3602 1.9866 -1.1798 5 1 2.8440 2.9521 -1.1709 6 6 2.0849 1.3592 -2.3870 7 7 1.1063 0.4825 -2.4650 8 14 3.1031 1.7593 -3.9011 9 1 4.3294 0.9217 -3.9083 10 1 2.3056 1.4798 -5.1221 11 1 3.4842 3.1944 -3.8763 12 6 2.1411 2.1147 1.2621 13 6 0.8506 2.8375 1.5507 14 7 -0.1376 2.3453 2.2117 15 6 -1.2109 3.1045 2.3789 16 6 -1.0947 4.3182 1.8084 17 16 0.4842 4.4271 1.0410 18 6 -2.1518 5.3962 1.8315 19 6 -3.4871 4.7623 2.2376 20 1 -3.8524 4.1309 1.4276 21 6 -4.5088 5.8631 2.5292 22 6 -3.2738 3.9124 3.4936 23 6 -2.4573 2.6688 3.1345 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.9141 0.0439 -3.3085 30 1 2.9529 2.8379 1.1847 31 1 2.3540 1.4147 2.0701 32 1 -1.8762 6.1636 2.5548 33 1 -2.2438 5.8399 0.8402 34 1 -4.6528 6.4711 1.6360 35 1 -5.4578 5.4111 2.8173 36 1 -4.1438 6.4917 3.3415 37 1 -2.7369 4.4967 4.2409 38 1 -4.2406 3.6089 3.8954 39 1 -2.1680 2.1463 4.0462 40 1 -3.0538 2.0082 2.5054 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:41 Heat of formation + Delta-G solvation = 50.462699 kcal Electronic energy + Delta-G solvation = -20273.813232 eV Core-core repulsion = 17408.398599 eV Total energy + Delta-G solvation = -2865.414633 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.61439 -37.03853 -35.76959 -31.95182 -31.07573 -30.29471 -29.46595 -27.25841 -25.14017 -23.65082 -23.36275 -21.73441 -20.58840 -20.07622 -18.00327 -17.32473 -16.63544 -15.12597 -14.97682 -14.57743 -14.11982 -13.90926 -13.74522 -13.45057 -13.40515 -12.89189 -12.69843 -12.27048 -12.15137 -11.79373 -11.58989 -11.51214 -11.36785 -11.25495 -10.84012 -10.81751 -10.67540 -10.52161 -10.45306 -10.07154 -10.02027 -9.76015 -9.37396 -8.77523 -8.45325 -8.37515 -7.86224 -7.03048 -5.87084 -3.16007 1.45334 2.13149 2.60142 3.34989 3.41248 3.42915 3.50658 4.43497 4.60269 4.77015 4.84832 4.91265 5.24267 5.36588 5.43362 5.49626 5.55788 5.61686 5.66432 5.68885 5.79102 5.86661 5.98691 6.05622 6.08247 6.16832 6.20420 6.40011 6.43579 6.55355 6.67477 6.91554 7.00039 7.21274 7.27036 7.59838 7.79579 8.13468 8.25324 8.58978 9.12331 9.72260 10.17624 11.14650 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.023825 B = 0.005180 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.974263 B = 5404.614071 C = 5678.555067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.167 3.833 3 N -0.571 5.571 4 C -0.256 4.256 5 H 0.078 0.922 6 C 0.004 3.996 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.286 1.286 10 H -0.292 1.292 11 H -0.279 1.279 12 C 0.211 3.789 13 C 0.075 3.925 14 N -0.488 5.488 15 C 0.071 3.929 16 C -0.262 4.262 17 S 0.088 5.912 18 C -0.026 4.026 19 C -0.089 4.089 20 H 0.074 0.926 21 C -0.144 4.144 22 C -0.110 4.110 23 C -0.037 4.037 24 H 0.081 0.919 25 H 0.015 0.985 26 H 0.037 0.963 27 H 0.087 0.913 28 H 0.007 0.993 29 H 0.255 0.745 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.905 7.752 10.039 14.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.043 3.957 3 N -0.290 5.290 4 C -0.385 4.385 5 H 0.096 0.904 6 C -0.196 4.196 7 N -0.527 5.527 8 Si 0.732 3.268 9 H -0.213 1.213 10 H -0.218 1.218 11 H -0.205 1.205 12 C 0.079 3.921 13 C -0.207 4.207 14 N -0.203 5.203 15 C -0.061 4.061 16 C -0.383 4.383 17 S 0.347 5.653 18 C -0.066 4.066 19 C -0.109 4.109 20 H 0.092 0.908 21 C -0.202 4.202 22 C -0.148 4.148 23 C -0.077 4.077 24 H 0.100 0.900 25 H 0.034 0.966 26 H 0.056 0.944 27 H 0.105 0.895 28 H 0.026 0.974 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.257 7.845 9.464 13.793 hybrid contribution -0.541 -0.136 -0.649 0.856 sum -6.798 7.709 8.815 13.540 Atomic orbital electron populations 1.22337 0.98918 0.98242 1.02253 1.20907 0.92935 0.83581 0.98296 1.44723 1.73187 1.09714 1.01382 1.19368 1.31531 1.04192 0.83421 0.90435 1.24824 0.97489 0.99666 0.97581 1.70220 1.26530 1.30779 1.25185 0.86289 0.80217 0.78099 0.82181 1.21265 1.21835 1.20471 1.19808 0.88050 0.93959 0.90258 1.29225 1.02569 0.93305 0.95639 1.65807 1.00288 1.35082 1.19129 1.20729 0.95091 0.89818 1.00507 1.25689 1.01256 1.01624 1.09775 1.83786 1.09892 1.18021 1.53651 1.20045 0.90844 0.94245 1.01428 1.21197 0.94519 0.96923 0.98287 0.90770 1.21812 0.98507 0.98351 1.01519 1.21601 0.99669 0.96128 0.97402 1.20260 0.91171 0.97258 0.98997 0.89985 0.96614 0.94405 0.89455 0.97428 0.93512 0.91353 0.91013 0.91092 0.91158 0.92646 0.92576 0.92677 0.91748 0.91363 0.90454 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 9.58 37.16 0.36 -3.56 16 2 C 0.17 4.13 5.64 -4.04 -0.02 4.10 16 3 N -0.57 -14.02 2.52 -174.61 -0.44 -14.46 16 4 C -0.26 -6.70 9.70 -15.06 -0.15 -6.85 16 5 H 0.08 1.99 7.93 -52.49 -0.42 1.57 16 6 C 0.00 0.10 4.90 -17.43 -0.09 0.01 16 7 N -0.88 -24.53 8.58 55.49 0.48 -24.05 16 8 Si 0.90 21.14 29.62 -169.99 -5.04 16.11 16 9 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.21 4.43 6.28 -5.20 -0.03 4.40 16 13 C 0.07 1.56 6.51 -13.60 -0.09 1.47 16 14 N -0.49 -10.19 8.68 -7.33 -0.06 -10.26 16 15 C 0.07 1.31 6.78 -82.87 -0.56 0.75 16 16 C -0.26 -4.55 6.39 -35.44 -0.23 -4.77 16 17 S 0.09 1.67 23.17 -107.50 -2.49 -0.82 16 18 C -0.03 -0.35 5.59 -27.59 -0.15 -0.50 16 19 C -0.09 -1.04 2.73 -90.40 -0.25 -1.28 16 20 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 21 C -0.14 -1.30 9.18 37.16 0.34 -0.96 16 22 C -0.11 -1.25 5.18 -26.64 -0.14 -1.39 16 23 C -0.04 -0.53 6.29 -27.16 -0.17 -0.71 16 24 H 0.08 2.30 6.32 -51.93 -0.33 1.97 16 25 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.04 0.92 5.84 -51.93 -0.30 0.61 16 27 H 0.09 2.35 5.86 -51.93 -0.30 2.04 16 28 H 0.01 0.17 7.98 -51.93 -0.41 -0.24 16 29 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.07 1.32 8.03 -51.93 -0.42 0.90 16 31 H 0.07 1.42 7.95 -51.93 -0.41 1.00 16 32 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 38 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 326.28 15.07 4.92 4.92 Total: -1.00 -28.78 326.28 -10.19 -38.96 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.37 Total: -1.11 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.18 Total: -9.29 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.03 Total: -48.77 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.04 Total: 16.11 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.49 Total: -0.82 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.78 -10.19 -38.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.427 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds