Wall clock time and date at job start Tue Mar 31 2020 02:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47431 * 2 1 4 4 C 1.36937 * 120.00113 * 264.17087 * 3 2 1 5 5 H 1.07991 * 119.99861 * 188.26266 * 4 3 2 6 6 C 1.38814 * 119.99646 * 8.26259 * 4 3 2 7 7 N 1.31620 * 120.00304 * 25.12636 * 6 4 3 8 8 Si 1.86797 * 119.99861 * 205.11791 * 6 4 3 9 9 H 1.48506 * 109.46686 * 84.99496 * 8 6 4 10 10 H 1.48497 * 109.47614 * 204.99310 * 8 6 4 11 11 H 1.48496 * 109.47236 * 325.00120 * 8 6 4 12 12 C 1.46494 * 119.99710 * 84.17135 * 3 2 1 13 13 C 1.50702 * 109.47298 * 269.99983 * 12 3 2 14 14 N 1.28673 * 124.92985 * 89.69684 * 13 12 3 15 15 C 1.32524 * 117.88158 * 180.26202 * 14 13 12 16 16 C 1.34610 * 113.15127 * 0.02628 * 15 14 13 17 17 S 1.70910 * 124.92930 * 270.00482 * 13 12 3 18 18 C 1.51004 * 125.22307 * 179.97438 * 16 15 14 19 19 C 1.53281 * 108.58014 * 343.93983 * 18 16 15 20 20 H 1.09006 * 109.54716 * 289.41299 * 19 18 16 21 21 C 1.52998 * 109.55142 * 169.22582 * 19 18 16 22 22 C 1.53143 * 108.99495 * 49.26828 * 19 18 16 23 23 C 1.52124 * 124.20323 * 180.02562 * 15 14 13 24 24 H 1.09003 * 109.46795 * 60.00094 * 1 2 3 25 25 H 1.09000 * 109.47255 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46954 * 300.00212 * 1 2 3 27 27 H 1.09004 * 109.47175 * 240.00011 * 2 1 3 28 28 H 1.08999 * 109.47242 * 120.00097 * 2 1 3 29 29 H 0.96999 * 119.99892 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47291 * 150.00594 * 12 3 2 31 31 H 1.08998 * 109.47743 * 30.00389 * 12 3 2 32 32 H 1.08996 * 109.61872 * 103.66084 * 18 16 15 33 33 H 1.08997 * 109.61824 * 224.20974 * 18 16 15 34 34 H 1.09003 * 109.47403 * 59.99561 * 21 19 18 35 35 H 1.08992 * 109.47409 * 179.97438 * 21 19 18 36 36 H 1.09001 * 109.46943 * 300.00194 * 21 19 18 37 37 H 1.09002 * 109.47432 * 49.61235 * 22 19 18 38 38 H 1.09005 * 109.47027 * 169.61853 * 22 19 18 39 39 H 1.08994 * 109.59324 * 42.70278 * 23 15 14 40 40 H 1.08996 * 109.59398 * 282.24638 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3602 1.9866 -1.1798 5 1 2.8440 2.9521 -1.1709 6 6 2.0849 1.3592 -2.3870 7 7 1.1063 0.4825 -2.4650 8 14 3.1031 1.7593 -3.9011 9 1 4.3294 0.9217 -3.9083 10 1 2.3056 1.4798 -5.1221 11 1 3.4842 3.1944 -3.8763 12 6 2.1411 2.1147 1.2621 13 6 0.8506 2.8375 1.5507 14 7 -0.1376 2.3453 2.2117 15 6 -1.2109 3.1045 2.3789 16 6 -1.0947 4.3182 1.8084 17 16 0.4842 4.4271 1.0410 18 6 -2.1518 5.3962 1.8315 19 6 -3.4871 4.7623 2.2376 20 1 -3.8524 4.1309 1.4276 21 6 -4.5088 5.8631 2.5292 22 6 -3.2738 3.9124 3.4936 23 6 -2.4573 2.6688 3.1345 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.9141 0.0439 -3.3085 30 1 2.9529 2.8379 1.1847 31 1 2.3540 1.4147 2.0701 32 1 -1.8762 6.1636 2.5548 33 1 -2.2438 5.8399 0.8402 34 1 -4.6528 6.4711 1.6360 35 1 -5.4578 5.4111 2.8173 36 1 -4.1438 6.4917 3.3415 37 1 -2.7369 4.4967 4.2409 38 1 -4.2406 3.6089 3.8954 39 1 -2.1680 2.1463 4.0462 40 1 -3.0538 2.0082 2.5054 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:40 Heat of formation + Delta-G solvation = 36.351180 kcal Electronic energy + Delta-G solvation = -20274.425153 eV Core-core repulsion = 17408.398599 eV Total energy + Delta-G solvation = -2866.026555 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.99548 -38.44534 -37.38106 -33.67561 -32.37466 -31.75900 -31.11733 -28.83377 -26.49160 -25.30395 -24.75373 -23.18121 -22.21599 -21.42031 -19.41088 -18.74714 -18.50166 -17.01417 -16.20760 -15.87526 -15.70464 -15.42661 -15.12616 -14.86373 -14.81439 -14.16646 -13.93293 -13.86858 -13.56927 -13.26853 -13.21000 -12.94890 -12.72081 -12.59815 -12.54816 -12.38407 -12.25353 -11.92403 -11.76759 -11.62351 -11.47047 -11.36152 -11.20677 -10.44793 -10.30642 -9.91541 -9.34810 -8.95294 -7.85658 -5.18549 -0.03792 0.65634 1.07756 1.48537 1.51754 1.57981 1.97823 2.52792 3.18809 3.33771 3.68135 3.82365 3.86829 3.92274 4.21953 4.23988 4.49147 4.55613 4.60896 4.67011 4.72321 4.74338 4.78971 4.80452 4.92568 4.98605 5.03268 5.10396 5.20642 5.21878 5.24367 5.27884 5.41908 5.49379 5.55772 5.57530 5.78879 6.07372 6.27935 7.05872 7.13983 7.80676 8.23420 9.15577 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.023825 B = 0.005180 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.974263 B = 5404.614071 C = 5678.555067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.173 3.827 3 N -0.588 5.588 4 C -0.261 4.261 5 H 0.079 0.921 6 C -0.045 4.045 7 N -0.913 5.913 8 Si 0.960 3.040 9 H -0.285 1.285 10 H -0.300 1.300 11 H -0.272 1.272 12 C 0.212 3.788 13 C 0.049 3.951 14 N -0.502 5.502 15 C 0.043 3.957 16 C -0.247 4.247 17 S 0.089 5.911 18 C -0.029 4.029 19 C -0.087 4.087 20 H 0.059 0.941 21 C -0.138 4.138 22 C -0.103 4.103 23 C -0.036 4.036 24 H 0.048 0.952 25 H 0.024 0.976 26 H 0.037 0.963 27 H 0.062 0.938 28 H 0.024 0.976 29 H 0.247 0.753 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.075 9.459 11.480 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.048 3.952 3 N -0.308 5.308 4 C -0.390 4.390 5 H 0.097 0.903 6 C -0.241 4.241 7 N -0.559 5.559 8 Si 0.789 3.211 9 H -0.212 1.212 10 H -0.227 1.227 11 H -0.197 1.197 12 C 0.081 3.919 13 C -0.232 4.232 14 N -0.217 5.217 15 C -0.088 4.088 16 C -0.369 4.369 17 S 0.346 5.654 18 C -0.069 4.069 19 C -0.107 4.107 20 H 0.078 0.922 21 C -0.195 4.195 22 C -0.140 4.140 23 C -0.076 4.076 24 H 0.067 0.933 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.042 0.958 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.422 9.576 10.935 16.321 hybrid contribution -0.240 -0.549 -0.921 1.099 sum -7.662 9.027 10.014 15.507 Atomic orbital electron populations 1.22129 0.99165 0.98221 1.00395 1.20728 0.92607 0.84094 0.97727 1.44670 1.74118 1.10048 1.01940 1.19549 1.31271 1.04029 0.84192 0.90340 1.25454 0.98418 1.00302 0.99894 1.70373 1.27912 1.32418 1.25148 0.85384 0.78579 0.78084 0.79034 1.21215 1.22714 1.19662 1.19821 0.88553 0.94400 0.89097 1.28813 1.02384 0.94769 0.97242 1.65825 1.00928 1.35965 1.19015 1.21393 0.95795 0.90088 1.01528 1.26289 1.00678 1.02330 1.07556 1.83684 1.11410 1.16830 1.53456 1.20290 0.90619 0.93591 1.02387 1.21197 0.93968 0.97599 0.97926 0.92229 1.21762 0.98129 0.97521 1.02135 1.21602 1.00464 0.94604 0.97371 1.20410 0.89796 0.98876 0.98537 0.93345 0.95696 0.94366 0.91949 0.95811 0.94330 0.90022 0.90108 0.88961 0.90856 0.92335 0.91245 0.91543 0.91079 0.88665 0.89951 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.03 9.58 71.98 0.69 -6.34 16 2 C 0.17 8.68 5.64 86.38 0.49 9.16 16 3 N -0.59 -29.08 2.52 -706.36 -1.78 -30.87 16 4 C -0.26 -13.81 9.70 84.03 0.82 -13.00 16 5 H 0.08 4.04 7.93 -2.92 -0.02 4.02 16 6 C -0.04 -2.43 4.90 84.86 0.42 -2.01 16 7 N -0.91 -52.17 8.58 21.65 0.19 -51.98 16 8 Si 0.96 44.20 29.62 68.60 2.03 46.23 16 9 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 10 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 C 0.21 8.85 6.28 85.64 0.54 9.39 16 13 C 0.05 2.05 6.51 88.57 0.58 2.62 16 14 N -0.50 -20.71 8.68 -177.09 -1.54 -22.25 16 15 C 0.04 1.54 6.78 42.08 0.29 1.83 16 16 C -0.25 -8.19 6.39 24.95 0.16 -8.03 16 17 S 0.09 3.29 23.17 -56.49 -1.31 1.98 16 18 C -0.03 -0.71 5.59 30.04 0.17 -0.54 16 19 C -0.09 -1.75 2.73 -10.65 -0.03 -1.77 16 20 H 0.06 1.39 8.11 -2.38 -0.02 1.37 16 21 C -0.14 -1.93 9.18 71.98 0.66 -1.27 16 22 C -0.10 -1.99 5.18 30.66 0.16 -1.83 16 23 C -0.04 -0.98 6.29 30.32 0.19 -0.79 16 24 H 0.05 2.77 6.32 -2.39 -0.02 2.75 16 25 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.04 1.87 5.84 -2.39 -0.01 1.85 16 27 H 0.06 3.44 5.86 -2.39 -0.01 3.43 16 28 H 0.02 1.09 7.98 -2.39 -0.02 1.07 16 29 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 30 H 0.08 3.12 8.03 -2.39 -0.02 3.10 16 31 H 0.08 3.15 7.95 -2.39 -0.02 3.13 16 32 H 0.09 1.89 8.11 -2.39 -0.02 1.87 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 38 H 0.09 1.38 8.11 -2.38 -0.02 1.36 16 39 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -62.48 326.28 3.72 -58.76 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 1.01 Total: 10.71 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 5.12 Total: -12.58 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -3.13 Total: -105.10 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -1.31 Total: 1.98 kcal Total: -62.48 3.72 -58.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.108 kcal (2) G-P(sol) polarization free energy of solvation -62.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds