Wall clock time and date at job start Tue Mar 31 2020 02:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47347 * 2 1 4 4 C 1.36931 * 120.00131 * 269.77746 * 3 2 1 5 5 H 1.08000 * 120.00075 * 322.08628 * 4 3 2 6 6 C 1.38809 * 120.00384 * 142.08092 * 4 3 2 7 7 N 1.31616 * 120.00356 * 156.99874 * 6 4 3 8 8 Si 1.86800 * 119.99829 * 337.00186 * 6 4 3 9 9 H 1.48502 * 109.47408 * 95.69771 * 8 6 4 10 10 H 1.48501 * 109.47180 * 215.70026 * 8 6 4 11 11 H 1.48497 * 109.47080 * 335.69674 * 8 6 4 12 12 C 1.46497 * 119.99651 * 89.77201 * 3 2 1 13 13 C 1.50696 * 109.47170 * 90.00862 * 12 3 2 14 14 N 1.28667 * 124.93716 * 90.01723 * 13 12 3 15 15 C 1.32519 * 117.88463 * 179.97438 * 14 13 12 16 16 C 1.34613 * 113.15487 * 359.97438 * 15 14 13 17 17 S 1.70916 * 124.92873 * 269.99832 * 13 12 3 18 18 C 1.50996 * 125.22438 * 180.02562 * 16 15 14 19 19 C 1.53281 * 108.58284 * 16.06094 * 18 16 15 20 20 H 1.09001 * 109.54917 * 70.58519 * 19 18 16 21 21 C 1.53004 * 109.63009 * 190.82429 * 19 18 16 22 22 C 1.53140 * 108.99363 * 310.73158 * 19 18 16 23 23 C 1.52131 * 124.20262 * 179.97438 * 15 14 13 24 24 H 1.08997 * 109.47223 * 299.99598 * 1 2 3 25 25 H 1.08997 * 109.47001 * 60.00086 * 1 2 3 26 26 H 1.08995 * 109.46878 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47263 * 240.00242 * 2 1 3 28 28 H 1.09003 * 109.47598 * 120.00248 * 2 1 3 29 29 H 0.97002 * 120.00478 * 180.02562 * 7 6 4 30 30 H 1.08991 * 109.47405 * 330.00326 * 12 3 2 31 31 H 1.09009 * 109.47081 * 210.00031 * 12 3 2 32 32 H 1.08996 * 109.62038 * 256.33348 * 18 16 15 33 33 H 1.09003 * 109.61825 * 135.78955 * 18 16 15 34 34 H 1.08998 * 109.46614 * 179.76021 * 21 19 18 35 35 H 1.09000 * 109.47019 * 299.75545 * 21 19 18 36 36 H 1.08993 * 109.46920 * 59.76055 * 21 19 18 37 37 H 1.09007 * 109.47351 * 190.37468 * 22 19 18 38 38 H 1.09002 * 109.47582 * 310.37644 * 22 19 18 39 39 H 1.09003 * 109.59434 * 77.79151 * 23 15 14 40 40 H 1.08996 * 109.59576 * 317.33624 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2510 2.0252 -1.1858 5 1 2.6728 1.4847 -2.0202 6 6 1.9444 3.3728 -1.3157 7 7 2.5484 4.0999 -2.2315 8 14 0.6747 4.1544 -0.1904 9 1 1.3610 4.8001 0.9574 10 1 -0.0942 5.1760 -0.9458 11 1 -0.2523 3.1086 0.3117 12 6 2.2578 2.0734 1.2687 13 6 3.6794 1.8373 1.7093 14 7 4.6808 2.5827 1.3977 15 6 5.8742 2.2441 1.8639 16 6 5.8507 1.1307 2.6202 17 16 4.1956 0.5407 2.6960 18 6 7.0527 0.5043 3.2856 19 6 8.1915 1.5301 3.3025 20 1 7.9549 2.3261 4.0087 21 6 9.4941 0.8451 3.7209 22 6 8.3510 2.1210 1.8988 23 6 7.1528 3.0200 1.5853 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.3345 5.0417 -2.3220 30 1 1.5742 1.6903 2.0263 31 1 2.0913 3.1426 1.1364 32 1 7.3630 -0.3776 2.7253 33 1 6.7995 0.2216 4.3074 34 1 10.3028 1.5759 3.7280 35 1 9.3780 0.4221 4.7187 36 1 9.7295 0.0496 3.0140 37 1 9.2679 2.7090 1.8540 38 1 8.4011 1.3137 1.1681 39 1 7.1866 3.9078 2.2169 40 1 7.1808 3.3138 0.5361 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398928.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:44 Heat of formation + Delta-G solvation = 26.679723 kcal Electronic energy + Delta-G solvation = -20123.754123 eV Core-core repulsion = 17257.308183 eV Total energy + Delta-G solvation = -2866.445940 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.08153 -38.55927 -37.46238 -34.02978 -32.81271 -31.92748 -31.05260 -29.09854 -26.52541 -25.59152 -24.87584 -23.39832 -22.09518 -21.42005 -19.38069 -19.28134 -18.46724 -17.21809 -16.53859 -15.95102 -15.91309 -15.44968 -15.30968 -15.03081 -14.79668 -14.53544 -14.24290 -13.97461 -13.83191 -13.52768 -13.22645 -13.10664 -12.92295 -12.67825 -12.64403 -12.46845 -12.27083 -12.10839 -11.75738 -11.66019 -11.60685 -11.48280 -11.25677 -10.69997 -10.30209 -10.03518 -9.41338 -8.91967 -8.22724 -5.61888 -0.14294 0.52685 0.88202 1.28457 1.36585 1.48175 1.91916 2.40371 2.99395 3.25627 3.36988 3.78342 3.84944 3.88525 4.10080 4.17271 4.26882 4.34454 4.50527 4.54612 4.56499 4.65182 4.73540 4.76313 4.77571 4.78759 4.91427 4.96272 5.03228 5.08408 5.18119 5.21661 5.22685 5.40625 5.44600 5.52597 5.53101 5.89547 6.13568 6.89094 7.09216 7.55372 7.95477 8.96800 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022660 B = 0.005664 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.362371 B = 4942.481961 C = 5647.087308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.138 3.862 3 N -0.597 5.597 4 C -0.257 4.257 5 H 0.033 0.967 6 C -0.004 4.004 7 N -0.940 5.940 8 Si 0.930 3.070 9 H -0.283 1.283 10 H -0.304 1.304 11 H -0.239 1.239 12 C 0.198 3.802 13 C 0.039 3.961 14 N -0.509 5.509 15 C 0.038 3.962 16 C -0.234 4.234 17 S 0.122 5.878 18 C -0.029 4.029 19 C -0.083 4.083 20 H 0.074 0.926 21 C -0.139 4.139 22 C -0.105 4.105 23 C -0.041 4.041 24 H 0.048 0.952 25 H 0.034 0.966 26 H 0.078 0.922 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.262 0.738 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.111 -9.157 15.925 20.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.014 3.986 3 N -0.319 5.319 4 C -0.387 4.387 5 H 0.051 0.949 6 C -0.202 4.202 7 N -0.583 5.583 8 Si 0.758 3.242 9 H -0.211 1.211 10 H -0.232 1.232 11 H -0.162 1.162 12 C 0.069 3.931 13 C -0.243 4.243 14 N -0.224 5.224 15 C -0.093 4.093 16 C -0.355 4.355 17 S 0.379 5.621 18 C -0.069 4.069 19 C -0.103 4.103 20 H 0.092 0.908 21 C -0.196 4.196 22 C -0.143 4.143 23 C -0.080 4.080 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.416 -9.454 15.958 20.368 hybrid contribution -0.045 1.560 -0.720 1.719 sum 8.370 -7.894 15.238 19.094 Atomic orbital electron populations 1.22192 0.97059 1.01612 1.00961 1.21105 0.93676 0.83740 1.00102 1.44232 1.74372 1.12913 1.00413 1.18430 1.36007 0.93411 0.90808 0.94928 1.25972 0.99014 0.97231 0.98005 1.70017 1.42206 1.07118 1.38944 0.86048 0.81197 0.78527 0.78409 1.21124 1.23222 1.16222 1.20116 0.86503 0.97771 0.88746 1.28387 1.01406 0.95390 0.99092 1.65825 0.99812 1.33488 1.23243 1.21404 0.93492 0.96322 0.98091 1.26391 0.99299 1.01206 1.08595 1.83102 1.01077 1.30289 1.47614 1.20361 0.88580 0.97931 1.00033 1.21186 0.95072 0.97448 0.96591 0.90788 1.21769 0.95243 1.00774 1.01826 1.21624 0.96606 0.98811 0.97250 1.20429 0.88490 0.97621 1.01502 0.93266 0.94629 0.90312 0.93770 0.91715 0.92929 0.88502 0.92785 0.89491 0.88858 0.91378 0.91434 0.92205 0.88700 0.92227 0.89815 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.31 10.24 71.98 0.74 -4.57 16 2 C 0.14 5.28 6.39 86.38 0.55 5.83 16 3 N -0.60 -28.56 2.05 -706.35 -1.45 -30.01 16 4 C -0.26 -15.04 9.90 84.03 0.83 -14.21 16 5 H 0.03 2.16 8.06 -2.91 -0.02 2.13 16 6 C 0.00 -0.27 5.29 84.86 0.45 0.18 16 7 N -0.94 -61.17 13.97 21.65 0.30 -60.87 16 8 Si 0.93 47.07 25.10 68.60 1.72 48.79 16 9 H -0.28 -14.25 6.68 99.48 0.66 -13.58 16 10 H -0.30 -15.46 7.11 99.48 0.71 -14.76 16 11 H -0.24 -10.98 7.11 99.48 0.71 -10.27 16 12 C 0.20 8.81 5.09 85.63 0.44 9.25 16 13 C 0.04 1.66 6.97 88.57 0.62 2.27 16 14 N -0.51 -23.96 10.51 -177.09 -1.86 -25.82 16 15 C 0.04 1.43 6.78 42.08 0.29 1.72 16 16 C -0.23 -7.31 6.39 24.95 0.16 -7.15 16 17 S 0.12 3.93 23.17 -56.49 -1.31 2.62 16 18 C -0.03 -0.62 5.59 30.04 0.17 -0.45 16 19 C -0.08 -1.51 2.73 -10.65 -0.03 -1.54 16 20 H 0.07 1.38 8.11 -2.39 -0.02 1.36 16 21 C -0.14 -1.72 9.18 71.98 0.66 -1.06 16 22 C -0.11 -2.28 5.18 30.65 0.16 -2.13 16 23 C -0.04 -1.26 6.29 30.32 0.19 -1.06 16 24 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.04 1.76 8.04 -2.38 -0.02 1.74 16 28 H 0.06 2.12 8.07 -2.39 -0.02 2.10 16 29 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 30 H 0.10 3.53 8.07 -2.39 -0.02 3.51 16 31 H 0.05 2.71 3.37 -2.38 -0.01 2.71 16 32 H 0.09 1.70 8.12 -2.39 -0.02 1.68 16 33 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.09 1.60 8.11 -2.38 -0.02 1.58 16 38 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 39 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -73.77 331.33 3.59 -70.18 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 0.97 Total: 8.03 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 5.22 Total: -12.92 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -3.01 Total: -116.69 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.72 Total: 48.79 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -1.31 Total: 2.62 kcal Total: -73.77 3.59 -70.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398928.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.859 kcal (2) G-P(sol) polarization free energy of solvation -73.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds