Wall clock time and date at job start Tue Mar 31 2020 03:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 111.00064 * 2 1 4 4 C 1.50699 * 109.47118 * 293.95064 * 3 2 1 5 5 H 1.08007 * 119.99863 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00267 * 179.97438 * 4 3 2 7 7 N 1.31506 * 119.99958 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99988 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47398 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46996 * 120.00355 * 8 6 4 11 11 H 1.48501 * 109.47229 * 240.00242 * 8 6 4 12 12 C 1.46901 * 110.99892 * 123.95440 * 2 1 3 13 13 C 1.50696 * 109.47303 * 66.04259 * 12 2 1 14 14 O 1.21284 * 120.00096 * 0.02562 * 13 12 2 15 15 N 1.34774 * 119.99838 * 180.02562 * 13 12 2 16 16 C 1.46506 * 120.00072 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47289 * 179.97438 * 16 15 13 18 18 C 1.38218 * 120.01072 * 105.00098 * 17 16 15 19 19 C 1.38214 * 120.02377 * 179.97438 * 18 17 16 20 20 C 1.38265 * 120.05476 * 0.02562 * 19 18 17 21 21 C 1.38180 * 120.02127 * 0.02562 * 20 19 18 22 22 C 1.38437 * 120.01312 * 284.72220 * 17 16 15 23 23 F 1.35097 * 120.02358 * 0.02562 * 22 17 16 24 24 H 1.08999 * 109.46817 * 296.04976 * 1 2 3 25 25 H 1.09002 * 109.47087 * 56.04896 * 1 2 3 26 26 H 1.08997 * 109.47112 * 176.04588 * 1 2 3 27 27 H 1.08996 * 109.47620 * 53.94992 * 3 2 1 28 28 H 1.09004 * 109.46863 * 173.95577 * 3 2 1 29 29 H 0.97000 * 120.00166 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46970 * 306.04338 * 12 2 1 31 31 H 1.09001 * 109.47332 * 186.04746 * 12 2 1 32 32 H 0.97001 * 120.00676 * 359.97438 * 15 13 12 33 33 H 1.09001 * 109.47060 * 300.00359 * 16 15 13 34 34 H 1.09004 * 109.47073 * 59.99848 * 16 15 13 35 35 H 1.08006 * 119.98901 * 359.97438 * 18 17 16 36 36 H 1.07999 * 119.97625 * 179.97438 * 19 18 17 37 37 H 1.08000 * 119.99394 * 179.97438 * 20 19 18 38 38 H 1.08004 * 120.00951 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0269 3.3494 -1.5286 7 7 2.7120 4.0018 -0.6151 8 14 1.5819 4.1871 -3.1378 9 1 0.8138 3.2448 -3.9906 10 1 0.7544 5.3881 -2.8584 11 1 2.8233 4.5946 -3.8435 12 6 1.9955 -0.7660 1.1376 13 6 1.6369 -2.2204 0.9729 14 8 1.0054 -2.5833 0.0031 15 7 2.0179 -3.1179 1.9034 16 6 1.6699 -4.5319 1.7431 17 6 2.2098 -5.3177 2.9102 18 6 1.3536 -5.7606 3.9007 19 6 1.8485 -6.4817 4.9710 20 6 3.2003 -6.7604 5.0524 21 6 4.0583 -6.3177 4.0638 22 6 3.5627 -5.6011 2.9876 23 9 4.3996 -5.1730 2.0174 24 1 -0.3633 0.4513 0.9233 25 1 -0.3633 0.5739 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 1.5612 1.9274 0.8308 28 1 3.0798 1.3443 0.1082 29 1 2.9865 4.9179 -0.7771 30 1 1.5611 -0.3872 2.0628 31 1 3.0797 -0.6611 1.1757 32 1 2.5233 -2.8278 2.6789 33 1 0.5856 -4.6370 1.7042 34 1 2.1049 -4.9106 0.8181 35 1 0.2975 -5.5431 3.8384 36 1 1.1789 -6.8271 5.7448 37 1 3.5860 -7.3236 5.8894 38 1 5.1142 -6.5352 4.1278 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096969446.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:07 Heat of formation + Delta-G solvation = -47.707863 kcal Electronic energy + Delta-G solvation = -20944.188091 eV Core-core repulsion = 17508.303286 eV Total energy + Delta-G solvation = -3435.884804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 2.96 seconds Orbital eigenvalues (eV) -49.15891 -39.82492 -39.05758 -36.07756 -34.80646 -32.47525 -31.82177 -30.86937 -28.49774 -26.98349 -25.96439 -23.90539 -23.18428 -21.90709 -20.79749 -19.94104 -17.97568 -17.05923 -16.79409 -16.28692 -16.18822 -15.80512 -15.37874 -15.25529 -14.62574 -14.50448 -14.06018 -13.78502 -13.67722 -13.45606 -13.26143 -12.77874 -12.64150 -12.34021 -11.99084 -11.79105 -11.39188 -11.34109 -10.99078 -10.80991 -10.64333 -10.49929 -9.94987 -9.63881 -9.36034 -9.16599 -8.95056 -8.93043 -8.40895 -7.19197 -6.00089 -4.00346 0.67038 0.78308 3.00346 3.03066 3.34670 3.41707 3.47442 3.51802 3.89016 4.20379 4.34257 4.47252 4.54105 4.79097 4.90214 5.09461 5.15914 5.27130 5.36354 5.40810 5.60916 5.65548 5.74325 5.79162 5.86486 5.92958 5.97639 6.33863 6.42355 6.45711 6.51904 6.95088 7.26563 7.33585 7.60389 7.85034 8.09042 8.22361 8.51831 8.60535 9.08134 9.63688 11.11128 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.038731 B = 0.002902 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.759497 B = 9647.538341 C = 9861.330397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.523 5.523 3 C 0.192 3.808 4 C -0.503 4.503 5 H 0.066 0.934 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.038 3.962 13 C 0.517 3.483 14 O -0.517 6.517 15 N -0.737 5.737 16 C 0.164 3.836 17 C -0.139 4.139 18 C -0.073 4.073 19 C -0.133 4.133 20 C -0.087 4.087 21 C -0.157 4.157 22 C 0.115 3.885 23 F -0.131 7.131 24 H 0.004 0.996 25 H 0.074 0.926 26 H 0.064 0.936 27 H -0.008 1.008 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.051 0.949 31 H 0.097 0.903 32 H 0.398 0.602 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.210 -21.935 14.819 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.248 5.248 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.084 0.916 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.094 4.094 13 C 0.303 3.697 14 O -0.391 6.391 15 N -0.392 5.392 16 C 0.041 3.959 17 C -0.140 4.140 18 C -0.092 4.092 19 C -0.151 4.151 20 C -0.105 4.105 21 C -0.176 4.176 22 C 0.095 3.905 23 F -0.109 7.109 24 H 0.023 0.977 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.010 0.990 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.232 0.768 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.002 -22.214 13.618 26.056 hybrid contribution 0.116 1.121 0.268 1.159 sum 0.117 -21.093 13.886 25.254 Atomic orbital electron populations 1.22362 0.88066 1.01139 0.99931 1.61847 1.07828 1.17261 1.37883 1.19799 0.95381 0.81123 0.96956 1.21206 1.34560 0.96813 1.01628 0.91617 1.24985 0.95331 0.97310 0.97078 1.69963 1.38633 1.11407 1.34078 0.86419 0.78153 0.79237 0.83518 1.19577 1.21143 1.21008 1.21939 1.02045 0.90178 0.95205 1.21027 0.78615 0.88260 0.81766 1.90650 1.38476 1.80499 1.29501 1.46093 1.59608 1.06888 1.26581 1.20007 1.00361 0.80526 0.95008 1.20055 0.92247 1.02823 0.98924 1.21052 0.99928 0.95831 0.92342 1.21238 0.95693 0.99533 0.98671 1.21082 0.93245 0.98180 0.97971 1.21206 1.01435 1.00659 0.94318 1.17647 0.87459 0.97865 0.87479 1.91557 1.70672 1.87724 1.60949 0.97741 0.90739 0.91755 0.98986 0.95149 0.93016 0.93091 0.88458 0.76811 0.90294 0.90430 0.84681 0.85114 0.84931 0.84546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 9.03 60.07 0.54 1.27 16 2 N -0.52 -12.16 4.49 -245.82 -1.10 -13.27 16 3 C 0.19 5.13 4.72 -4.98 -0.02 5.11 16 4 C -0.50 -14.62 8.46 -34.44 -0.29 -14.91 16 5 H 0.07 1.93 7.12 -52.48 -0.37 1.55 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 8 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 C 0.04 0.70 5.45 -4.98 -0.03 0.67 16 13 C 0.52 8.86 7.55 -10.99 -0.08 8.77 16 14 O -0.52 -10.77 14.31 5.55 0.08 -10.69 16 15 N -0.74 -9.43 5.55 -61.47 -0.34 -9.77 16 16 C 0.16 1.88 5.49 -5.19 -0.03 1.85 16 17 C -0.14 -1.29 5.25 -104.55 -0.55 -1.84 16 18 C -0.07 -0.53 9.67 -39.60 -0.38 -0.91 16 19 C -0.13 -0.79 10.04 -39.58 -0.40 -1.19 16 20 C -0.09 -0.51 10.04 -39.59 -0.40 -0.91 16 21 C -0.16 -1.18 10.03 -39.52 -0.40 -1.58 16 22 C 0.12 1.12 7.25 -39.42 -0.29 0.84 16 23 F -0.13 -1.55 16.75 2.25 0.04 -1.51 16 24 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 25 H 0.07 1.72 6.76 -51.93 -0.35 1.37 16 26 H 0.06 1.35 5.88 -51.93 -0.31 1.04 16 27 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 28 H 0.03 0.85 7.93 -51.93 -0.41 0.44 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.05 0.85 8.12 -51.93 -0.42 0.42 16 31 H 0.10 1.67 7.93 -51.93 -0.41 1.26 16 32 H 0.40 4.22 8.46 -40.82 -0.35 3.88 16 33 H 0.08 0.87 7.95 -51.93 -0.41 0.46 16 34 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 35 H 0.14 0.79 8.00 -52.48 -0.42 0.37 16 36 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 37 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 38 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 LS Contribution 328.67 15.07 4.95 4.95 Total: -1.00 -34.00 328.67 -8.20 -42.19 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.12 Total: -1.36 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -2.42 Total: -1.38 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -0.71 Total: -49.36 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.69 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.00 -8.20 -42.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096969446.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.514 kcal (2) G-P(sol) polarization free energy of solvation -33.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.96 seconds