Wall clock time and date at job start Tue Mar 31 2020 03:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 111.00064 * 2 1 4 4 C 1.50699 * 109.47118 * 293.95064 * 3 2 1 5 5 H 1.08007 * 119.99863 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00267 * 179.97438 * 4 3 2 7 7 N 1.31506 * 119.99958 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99988 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47398 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46996 * 120.00355 * 8 6 4 11 11 H 1.48501 * 109.47229 * 240.00242 * 8 6 4 12 12 C 1.46901 * 110.99892 * 123.95440 * 2 1 3 13 13 C 1.50696 * 109.47303 * 66.04259 * 12 2 1 14 14 O 1.21284 * 120.00096 * 0.02562 * 13 12 2 15 15 N 1.34774 * 119.99838 * 180.02562 * 13 12 2 16 16 C 1.46506 * 120.00072 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47289 * 179.97438 * 16 15 13 18 18 C 1.38218 * 120.01072 * 105.00098 * 17 16 15 19 19 C 1.38214 * 120.02377 * 179.97438 * 18 17 16 20 20 C 1.38265 * 120.05476 * 0.02562 * 19 18 17 21 21 C 1.38180 * 120.02127 * 0.02562 * 20 19 18 22 22 C 1.38437 * 120.01312 * 284.72220 * 17 16 15 23 23 F 1.35097 * 120.02358 * 0.02562 * 22 17 16 24 24 H 1.08999 * 109.46817 * 296.04976 * 1 2 3 25 25 H 1.09002 * 109.47087 * 56.04896 * 1 2 3 26 26 H 1.08997 * 109.47112 * 176.04588 * 1 2 3 27 27 H 1.08996 * 109.47620 * 53.94992 * 3 2 1 28 28 H 1.09004 * 109.46863 * 173.95577 * 3 2 1 29 29 H 0.97000 * 120.00166 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46970 * 306.04338 * 12 2 1 31 31 H 1.09001 * 109.47332 * 186.04746 * 12 2 1 32 32 H 0.97001 * 120.00676 * 359.97438 * 15 13 12 33 33 H 1.09001 * 109.47060 * 300.00359 * 16 15 13 34 34 H 1.09004 * 109.47073 * 59.99848 * 16 15 13 35 35 H 1.08006 * 119.98901 * 359.97438 * 18 17 16 36 36 H 1.07999 * 119.97625 * 179.97438 * 19 18 17 37 37 H 1.08000 * 119.99394 * 179.97438 * 20 19 18 38 38 H 1.08004 * 120.00951 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0269 3.3494 -1.5286 7 7 2.7120 4.0018 -0.6151 8 14 1.5819 4.1871 -3.1378 9 1 0.8138 3.2448 -3.9906 10 1 0.7544 5.3881 -2.8584 11 1 2.8233 4.5946 -3.8435 12 6 1.9955 -0.7660 1.1376 13 6 1.6369 -2.2204 0.9729 14 8 1.0054 -2.5833 0.0031 15 7 2.0179 -3.1179 1.9034 16 6 1.6699 -4.5319 1.7431 17 6 2.2098 -5.3177 2.9102 18 6 1.3536 -5.7606 3.9007 19 6 1.8485 -6.4817 4.9710 20 6 3.2003 -6.7604 5.0524 21 6 4.0583 -6.3177 4.0638 22 6 3.5627 -5.6011 2.9876 23 9 4.3996 -5.1730 2.0174 24 1 -0.3633 0.4513 0.9233 25 1 -0.3633 0.5739 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 1.5612 1.9274 0.8308 28 1 3.0798 1.3443 0.1082 29 1 2.9865 4.9179 -0.7771 30 1 1.5611 -0.3872 2.0628 31 1 3.0797 -0.6611 1.1757 32 1 2.5233 -2.8278 2.6789 33 1 0.5856 -4.6370 1.7042 34 1 2.1049 -4.9106 0.8181 35 1 0.2975 -5.5431 3.8384 36 1 1.1789 -6.8271 5.7448 37 1 3.5860 -7.3236 5.8894 38 1 5.1142 -6.5352 4.1278 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096969446.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:06 Heat of formation + Delta-G solvation = -71.359881 kcal Electronic energy + Delta-G solvation = -20945.213719 eV Core-core repulsion = 17508.303286 eV Total energy + Delta-G solvation = -3436.910433 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.94254 -40.97060 -39.91645 -37.79009 -35.98578 -34.63494 -32.67912 -31.45347 -30.10094 -28.82614 -27.14106 -25.72781 -23.76269 -22.85795 -22.33112 -21.39535 -18.83691 -18.51594 -17.97376 -17.50629 -17.33141 -16.77739 -16.62729 -16.45887 -16.25481 -15.68293 -15.39389 -15.20107 -15.01792 -14.39484 -14.23047 -14.03762 -13.81959 -13.63298 -13.29151 -13.21612 -12.79805 -12.66503 -12.60381 -12.53349 -12.33652 -11.98385 -11.97216 -11.43803 -10.82857 -10.62337 -10.17775 -9.98571 -9.67746 -9.02466 -8.21688 -6.30686 0.06687 0.23113 1.40430 1.41301 1.55427 1.62296 2.09070 2.41429 2.69879 3.10904 3.27337 3.38820 3.46596 3.75241 3.88957 4.05800 4.26193 4.31070 4.37465 4.39591 4.54217 4.57163 4.61374 4.68781 4.90019 5.08822 5.09116 5.14753 5.19460 5.26406 5.34126 5.40213 5.45685 5.63839 5.91761 6.00876 6.27733 6.39437 6.63605 6.84138 7.24937 7.38582 8.89566 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.038731 B = 0.002902 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.759497 B = 9647.538341 C = 9861.330397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.543 5.543 3 C 0.208 3.792 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.005 3.995 7 N -0.931 5.931 8 Si 0.968 3.032 9 H -0.269 1.269 10 H -0.275 1.275 11 H -0.276 1.276 12 C 0.036 3.964 13 C 0.522 3.478 14 O -0.559 6.559 15 N -0.716 5.716 16 C 0.167 3.833 17 C -0.150 4.150 18 C -0.075 4.075 19 C -0.127 4.127 20 C -0.079 4.079 21 C -0.162 4.162 22 C 0.087 3.913 23 F -0.152 7.152 24 H 0.015 0.985 25 H 0.054 0.946 26 H 0.073 0.927 27 H -0.027 1.027 28 H 0.012 0.988 29 H 0.266 0.734 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.411 0.589 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.150 0.850 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.206 -23.139 16.399 28.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.268 5.268 3 C 0.082 3.918 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.194 4.194 7 N -0.572 5.572 8 Si 0.793 3.207 9 H -0.193 1.193 10 H -0.200 1.200 11 H -0.202 1.202 12 C -0.096 4.096 13 C 0.309 3.691 14 O -0.437 6.437 15 N -0.370 5.370 16 C 0.044 3.956 17 C -0.152 4.152 18 C -0.093 4.093 19 C -0.144 4.144 20 C -0.097 4.097 21 C -0.180 4.180 22 C 0.068 3.932 23 F -0.130 7.130 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.092 0.908 27 H -0.009 1.009 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.247 0.753 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.167 0.833 36 H 0.178 0.822 37 H 0.181 0.819 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.397 -23.451 15.250 27.976 hybrid contribution 0.270 1.377 -0.081 1.406 sum -0.126 -22.074 15.169 26.784 Atomic orbital electron populations 1.22248 0.87330 1.01380 0.99580 1.61691 1.08675 1.15519 1.40867 1.19452 0.94066 0.82844 0.95410 1.21468 1.34969 0.97570 1.02429 0.92544 1.25851 0.94967 0.97857 1.00685 1.70061 1.39222 1.11930 1.35960 0.85347 0.78155 0.78161 0.79035 1.19310 1.20026 1.20177 1.22008 1.02541 0.90578 0.94437 1.20726 0.78348 0.88189 0.81866 1.90633 1.40722 1.81004 1.31314 1.45897 1.58216 1.07161 1.25723 1.20015 1.00633 0.79477 0.95517 1.19891 0.92460 1.03835 0.98987 1.21282 1.00399 0.95589 0.92062 1.21622 0.96222 0.98105 0.98494 1.21496 0.93095 0.97158 0.97978 1.21451 1.02519 1.00139 0.93921 1.17987 0.87568 0.99533 0.88134 1.91499 1.71306 1.88249 1.61994 0.96635 0.92704 0.90833 1.00909 0.96987 0.92544 0.90806 0.87645 0.75307 0.89721 0.92438 0.83254 0.82186 0.81875 0.83387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.88 9.03 127.69 1.15 3.03 16 2 N -0.54 -25.60 4.49 -931.65 -4.18 -29.78 16 3 C 0.21 11.39 4.72 85.56 0.40 11.80 16 4 C -0.53 -31.12 8.46 25.60 0.22 -30.91 16 5 H 0.06 3.38 7.12 -2.91 -0.02 3.35 16 6 C 0.00 0.27 5.46 84.66 0.46 0.73 16 7 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16 8 Si 0.97 45.63 29.54 68.60 2.03 47.66 16 9 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 12 C 0.04 1.30 5.45 85.56 0.47 1.76 16 13 C 0.52 17.85 7.55 87.66 0.66 18.51 16 14 O -0.56 -23.55 14.31 -3.04 -0.04 -23.59 16 15 N -0.72 -17.99 5.55 -466.77 -2.59 -20.58 16 16 C 0.17 3.79 5.49 85.63 0.47 4.26 16 17 C -0.15 -2.65 5.25 -19.82 -0.10 -2.75 16 18 C -0.07 -0.91 9.67 22.26 0.22 -0.69 16 19 C -0.13 -1.05 10.04 22.27 0.22 -0.83 16 20 C -0.08 -0.67 10.04 22.26 0.22 -0.45 16 21 C -0.16 -2.13 10.03 22.31 0.22 -1.91 16 22 C 0.09 1.65 7.25 22.37 0.16 1.81 16 23 F -0.15 -3.69 16.75 44.97 0.75 -2.94 16 24 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.05 2.58 6.76 -2.39 -0.02 2.56 16 26 H 0.07 3.10 5.88 -2.39 -0.01 3.08 16 27 H -0.03 -1.54 8.12 -2.39 -0.02 -1.56 16 28 H 0.01 0.69 7.93 -2.38 -0.02 0.67 16 29 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.07 2.37 8.12 -2.38 -0.02 2.35 16 31 H 0.11 3.63 7.93 -2.39 -0.02 3.61 16 32 H 0.41 8.31 8.46 -92.71 -0.78 7.53 16 33 H 0.08 1.83 7.95 -2.39 -0.02 1.81 16 34 H 0.06 1.55 8.07 -2.38 -0.02 1.53 16 35 H 0.15 1.33 8.00 -2.91 -0.02 1.31 16 36 H 0.16 0.42 8.06 -2.91 -0.02 0.40 16 37 H 0.16 0.38 8.06 -2.91 -0.02 0.36 16 38 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -74.27 328.67 1.31 -72.96 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.29 Total: 7.98 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 4.78 Total: 4.36 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -6.49 Total: -106.43 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.04 Total: -23.59 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.75 Total: -2.94 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -74.27 1.31 -72.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096969446.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.601 kcal (2) G-P(sol) polarization free energy of solvation -74.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds