Wall clock time and date at job start Tue Mar 31 2020 02:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46770 * 2 1 4 4 C 1.50699 * 109.47040 * 240.00293 * 2 1 3 5 5 C 1.38651 * 120.78824 * 206.22232 * 4 2 1 6 6 C 1.38206 * 119.15890 * 179.74262 * 5 4 2 7 7 N 1.31868 * 120.76695 * 0.25732 * 6 5 4 8 8 C 1.31874 * 121.72528 * 359.97438 * 7 6 5 9 9 C 1.38206 * 120.76493 * 359.97438 * 8 7 6 10 10 N 1.46894 * 109.47004 * 120.00295 * 2 1 3 11 11 C 1.46894 * 111.00292 * 53.70868 * 10 2 1 12 12 C 1.46900 * 110.99953 * 289.75168 * 10 2 1 13 13 C 1.53004 * 109.47281 * 190.00356 * 12 10 2 14 14 C 1.53000 * 109.47134 * 180.02562 * 13 12 10 15 15 S 1.81007 * 109.46755 * 179.97438 * 14 13 12 16 16 C 1.76207 * 99.99594 * 179.97438 * 15 14 13 17 17 H 1.07989 * 119.99883 * 359.97438 * 16 15 14 18 18 C 1.38801 * 119.99599 * 179.97438 * 16 15 14 19 19 N 1.31631 * 120.00171 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99756 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47197 * 60.00434 * 20 18 16 22 22 H 1.48501 * 109.47183 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47552 * 300.00451 * 20 18 16 24 24 H 1.08998 * 109.47422 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47045 * 300.00223 * 1 2 3 26 26 H 1.09001 * 109.47198 * 59.99875 * 1 2 3 27 27 H 1.07994 * 120.42113 * 0.02562 * 5 4 2 28 28 H 1.08004 * 119.61345 * 180.23013 * 6 5 4 29 29 H 1.08001 * 119.61995 * 179.97438 * 8 7 6 30 30 H 1.07996 * 120.42148 * 180.02562 * 9 8 7 31 31 H 1.09001 * 109.46947 * 53.70844 * 11 10 2 32 32 H 1.09004 * 109.46943 * 173.70948 * 11 10 2 33 33 H 1.09000 * 109.47150 * 293.70695 * 11 10 2 34 34 H 1.09000 * 109.47502 * 310.00062 * 12 10 2 35 35 H 1.09002 * 109.47266 * 70.00354 * 12 10 2 36 36 H 1.09000 * 109.46613 * 300.00250 * 13 12 10 37 37 H 1.09002 * 109.46972 * 59.99818 * 13 12 10 38 38 H 1.09002 * 109.46868 * 299.99701 * 14 13 12 39 39 H 1.08993 * 109.47341 * 60.00465 * 14 13 12 40 40 H 0.96996 * 119.99813 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 3.2763 -1.3226 -1.2384 6 6 3.7013 -1.9692 -2.3836 7 7 2.9411 -2.0034 -3.4605 8 6 1.7547 -1.4282 -3.4905 9 6 1.2629 -0.7640 -2.3827 10 7 2.0196 -0.6925 1.1994 11 6 1.4298 -2.0332 1.3108 12 6 1.7581 0.0998 2.4084 13 6 2.4939 -0.5239 3.5960 14 6 2.2210 0.3010 4.8554 15 16 3.0909 -0.4374 6.2605 16 6 2.6155 0.6808 7.5366 17 1 1.9692 1.5157 7.3097 18 6 3.0716 0.4885 8.8333 19 7 3.8597 -0.5290 9.1097 20 14 2.5682 1.6743 10.1859 21 1 1.0893 1.6714 10.3217 22 1 3.1843 1.2518 11.4693 23 1 3.0309 3.0428 9.8421 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 3.9032 -1.2985 -0.3594 28 1 4.6674 -2.4518 -2.3966 29 1 1.1606 -1.4768 -4.3911 30 1 0.2905 -0.2954 -2.4133 31 1 1.6025 -2.5841 0.3862 32 1 1.8917 -2.5654 2.1425 33 1 0.3577 -1.9451 1.4865 34 1 2.1110 1.1201 2.2576 35 1 0.6870 0.1119 2.6103 36 1 2.1411 -1.5442 3.7468 37 1 3.5650 -0.5360 3.3941 38 1 2.5736 1.3214 4.7048 39 1 1.1500 0.3126 5.0571 40 1 4.1787 -0.6631 10.0158 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119788185.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:26 Heat of formation + Delta-G solvation = 28.056602 kcal Electronic energy + Delta-G solvation = -18899.684206 eV Core-core repulsion = 16033.297971 eV Total energy + Delta-G solvation = -2866.386235 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.61002 -38.40778 -34.35525 -32.44343 -31.96799 -31.44362 -29.59942 -27.09388 -25.86871 -25.37853 -23.52437 -23.24982 -21.03085 -20.05972 -17.51063 -17.03369 -16.52156 -16.08160 -15.68074 -15.25436 -14.82914 -14.78240 -14.15482 -13.96630 -13.84129 -13.70600 -13.52926 -12.90945 -12.69549 -12.29527 -12.00809 -11.88554 -11.68383 -11.51799 -11.38322 -11.28834 -11.05181 -10.80074 -10.64824 -10.29048 -9.73189 -9.62827 -9.52847 -9.29945 -9.05575 -8.43649 -8.30718 -6.53100 -6.23020 -3.93346 0.96918 1.07803 3.20509 3.22537 3.27229 3.48130 3.64577 3.82847 4.22366 4.28264 4.31295 4.64824 4.81064 4.89802 4.97211 5.07174 5.12188 5.13521 5.19886 5.28006 5.34996 5.45589 5.47711 5.55319 5.61400 5.66893 5.72735 5.77689 5.85542 5.90969 5.95470 6.05987 6.17106 6.33758 6.54670 6.57130 6.73090 6.95062 6.98883 7.59759 7.80070 8.35977 9.23079 10.85120 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.045368 B = 0.002700 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.022111 B =10368.455158 C =10727.015091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.116 3.884 3 H 0.098 0.902 4 C -0.031 4.031 5 C -0.144 4.144 6 C 0.091 3.909 7 N -0.491 5.491 8 C 0.092 3.908 9 C -0.174 4.174 10 N -0.531 5.531 11 C 0.017 3.983 12 C 0.059 3.941 13 C -0.093 4.093 14 C -0.113 4.113 15 S -0.132 6.132 16 C -0.517 4.517 17 H 0.071 0.929 18 C 0.071 3.929 19 N -0.870 5.870 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.147 0.853 28 H 0.154 0.846 29 H 0.152 0.848 30 H 0.133 0.867 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.030 0.970 34 H 0.073 0.927 35 H 0.036 0.964 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.865 -0.365 -21.975 22.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.007 3.993 3 H 0.116 0.884 4 C -0.039 4.039 5 C -0.164 4.164 6 C -0.065 4.065 7 N -0.201 5.201 8 C -0.065 4.065 9 C -0.195 4.195 10 N -0.254 5.254 11 C -0.131 4.131 12 C -0.069 4.069 13 C -0.132 4.132 14 C -0.262 4.262 15 S 0.096 5.904 16 C -0.665 4.665 17 H 0.089 0.911 18 C -0.138 4.138 19 N -0.505 5.505 20 Si 0.744 3.256 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.199 1.199 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.165 0.835 28 H 0.172 0.828 29 H 0.169 0.831 30 H 0.151 0.849 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.273 -1.875 -22.541 23.019 hybrid contribution -2.335 2.378 1.707 3.745 sum -6.608 0.503 -20.834 21.863 Atomic orbital electron populations 1.22519 0.96505 1.02830 1.02694 1.20599 0.93047 0.97731 0.87919 0.88376 1.20257 0.93948 0.95255 0.94470 1.22169 0.96649 0.97646 0.99972 1.22826 0.99038 0.96176 0.88450 1.67648 1.05660 1.18057 1.28697 1.22682 0.92344 0.93697 0.97789 1.22093 1.01354 1.01946 0.94067 1.62166 1.58169 1.03166 1.01855 1.22486 0.97499 0.90467 1.02611 1.22233 0.98487 0.97180 0.89046 1.21275 1.01296 0.99101 0.91521 1.23229 1.02690 1.01682 0.98581 1.84636 1.65122 1.40527 1.00079 1.22647 1.35611 1.13858 0.94400 0.91056 1.25014 0.94727 0.95968 0.98079 1.70011 1.31696 1.28035 1.20793 0.86231 0.78849 0.80542 0.79948 1.19967 1.20805 1.19935 0.91759 0.91698 0.91710 0.83547 0.82849 0.83111 0.84876 0.91860 0.90456 0.95158 0.90818 0.94573 0.91616 0.90753 0.92164 0.92419 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.52 7.67 37.16 0.28 -1.23 16 2 C 0.12 1.08 2.74 -68.87 -0.19 0.89 16 3 H 0.10 0.91 7.93 -51.93 -0.41 0.50 16 4 C -0.03 -0.29 4.56 -104.32 -0.48 -0.77 16 5 C -0.14 -1.43 8.70 -39.44 -0.34 -1.77 16 6 C 0.09 0.90 11.18 -17.55 -0.20 0.71 16 7 N -0.49 -5.37 10.36 -13.25 -0.14 -5.51 16 8 C 0.09 0.83 11.18 -17.55 -0.20 0.64 16 9 C -0.17 -1.47 9.21 -39.44 -0.36 -1.84 16 10 N -0.53 -5.83 3.87 -236.29 -0.92 -6.74 16 11 C 0.02 0.19 8.22 60.06 0.49 0.68 16 12 C 0.06 0.74 4.53 -3.82 -0.02 0.72 16 13 C -0.09 -1.47 5.14 -26.73 -0.14 -1.60 16 14 C -0.11 -2.23 5.67 37.16 0.21 -2.01 16 15 S -0.13 -3.43 21.44 -107.50 -2.30 -5.74 16 16 C -0.52 -14.80 9.50 30.94 0.29 -14.50 16 17 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 18 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 19 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 20 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 24 H 0.06 0.55 6.47 -51.93 -0.34 0.21 16 25 H 0.06 0.56 6.92 -51.93 -0.36 0.20 16 26 H 0.06 0.43 6.62 -51.93 -0.34 0.08 16 27 H 0.15 1.46 7.61 -52.49 -0.40 1.06 16 28 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 29 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 30 H 0.13 0.85 6.22 -52.49 -0.33 0.53 16 31 H 0.06 0.65 6.66 -51.93 -0.35 0.31 16 32 H 0.08 0.89 6.58 -51.93 -0.34 0.55 16 33 H 0.03 0.31 6.59 -51.93 -0.34 -0.03 16 34 H 0.07 0.89 7.93 -51.93 -0.41 0.48 16 35 H 0.04 0.45 7.05 -51.93 -0.37 0.08 16 36 H 0.07 1.05 6.60 -51.93 -0.34 0.71 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 39 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 333.41 15.07 5.02 5.02 Total: -1.00 -31.47 333.41 -9.34 -40.81 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -5.99 Total: -0.87 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -0.73 Total: -18.17 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.32 Total: -37.51 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -2.30 Total: -5.74 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.47 -9.34 -40.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119788185.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.867 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds