Wall clock time and date at job start Tue Mar 31 2020 03:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 110.99906 * 2 1 4 4 C 1.53001 * 109.47353 * 66.04625 * 3 2 1 5 5 C 1.52998 * 109.47553 * 179.97438 * 4 3 2 6 6 S 1.80998 * 109.47330 * 179.97438 * 5 4 3 7 7 C 1.76205 * 99.99824 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00050 * 359.97438 * 7 6 5 9 9 C 1.38797 * 119.99678 * 180.02562 * 7 6 5 10 10 N 1.31635 * 119.99792 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00308 * 359.97438 * 9 7 6 12 12 H 1.48487 * 109.47286 * 90.00061 * 11 9 7 13 13 H 1.48500 * 109.47255 * 210.00497 * 11 9 7 14 14 H 1.48509 * 109.47018 * 330.00048 * 11 9 7 15 15 C 1.46898 * 111.00250 * 236.04632 * 2 1 3 16 16 C 1.53005 * 109.46714 * 293.95428 * 15 2 1 17 17 C 1.50703 * 109.46762 * 179.97438 * 16 15 2 18 18 C 1.38654 * 120.78444 * 89.99979 * 17 16 15 19 19 C 1.38209 * 119.15786 * 179.97438 * 18 17 16 20 20 N 1.31870 * 120.76375 * 0.26353 * 19 18 17 21 21 C 1.31872 * 121.72489 * 359.46946 * 20 19 18 22 22 C 1.38200 * 120.76402 * 0.52682 * 21 20 19 23 23 H 1.08996 * 109.47474 * 183.95398 * 1 2 3 24 24 H 1.09007 * 109.47448 * 303.95479 * 1 2 3 25 25 H 1.09005 * 109.47404 * 63.95451 * 1 2 3 26 26 H 1.09004 * 109.47159 * 186.04528 * 3 2 1 27 27 H 1.08997 * 109.47242 * 306.04644 * 3 2 1 28 28 H 1.09004 * 109.46909 * 300.00056 * 4 3 2 29 29 H 1.09008 * 109.47255 * 59.99522 * 4 3 2 30 30 H 1.09004 * 109.46889 * 300.00498 * 5 4 3 31 31 H 1.09003 * 109.46786 * 59.99679 * 5 4 3 32 32 H 0.96999 * 119.99967 * 179.97438 * 10 9 7 33 33 H 1.08997 * 109.47078 * 173.95744 * 15 2 1 34 34 H 1.08996 * 109.46859 * 53.94933 * 15 2 1 35 35 H 1.08997 * 109.47090 * 60.00323 * 16 15 2 36 36 H 1.08991 * 109.47048 * 299.99863 * 16 15 2 37 37 H 1.07995 * 120.42251 * 0.02562 * 18 17 16 38 38 H 1.08002 * 119.61346 * 179.97438 * 19 18 17 39 39 H 1.08004 * 119.61160 * 180.27376 * 21 20 19 40 40 H 1.08004 * 120.41549 * 179.76941 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1802 3.4857 1.3186 6 16 1.7490 4.2975 2.8777 7 6 2.4818 5.8778 2.6128 8 1 3.0017 6.0839 1.6888 9 6 2.3919 6.8574 3.5920 10 7 2.9399 8.0379 3.3942 11 14 1.4935 6.5007 5.1904 12 1 2.4494 5.9472 6.1827 13 1 0.9043 7.7574 5.7182 14 1 0.4122 5.5137 4.9408 15 6 1.9955 -0.7660 -1.1376 16 6 1.6314 -2.2426 -0.9702 17 6 2.1710 -3.0283 -2.1376 18 6 3.4416 -3.5817 -2.0940 19 6 3.9026 -4.2963 -3.1834 20 7 3.1514 -4.4499 -4.2563 21 6 1.9366 -3.9420 -4.3307 22 6 1.4087 -3.2154 -3.2804 23 1 -0.3634 -1.0252 0.0709 24 1 -0.3634 0.5740 0.8525 25 1 -0.3634 0.4512 -0.9233 26 1 3.0797 1.3445 -0.1082 27 1 1.5611 1.9274 -0.8309 28 1 0.5471 2.0845 1.4265 29 1 2.0657 1.5016 2.1493 30 1 3.2646 3.4582 1.2104 31 1 1.7463 4.0418 0.4876 32 1 2.8767 8.7226 4.0784 33 1 3.0797 -0.6611 -1.1755 34 1 1.5611 -0.3873 -2.0627 35 1 0.5472 -2.3475 -0.9323 36 1 2.0657 -2.6213 -0.0451 37 1 4.0629 -3.4565 -1.2195 38 1 4.8913 -4.7302 -3.1575 39 1 1.3492 -4.0923 -5.2244 40 1 0.4145 -2.7988 -3.3488 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121625694.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:13 Heat of formation + Delta-G solvation = 18.996395 kcal Electronic energy + Delta-G solvation = -18247.273258 eV Core-core repulsion = 15380.494144 eV Total energy + Delta-G solvation = -2866.779115 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -40.52075 -38.19847 -34.82903 -32.74925 -32.43794 -31.54115 -29.45559 -27.25874 -25.80406 -25.14299 -23.79936 -22.72698 -21.18137 -20.67777 -17.49492 -17.08038 -16.78633 -16.03845 -15.73490 -15.53951 -15.00609 -14.92968 -14.56429 -14.15412 -14.01807 -13.75728 -13.35928 -12.88077 -12.81039 -12.50194 -12.25949 -12.01335 -11.88278 -11.71012 -11.52767 -11.13582 -11.05037 -10.99188 -10.39378 -10.20095 -9.87870 -9.82552 -9.71876 -9.50544 -9.00943 -8.56888 -8.48271 -6.94672 -6.28787 -4.01056 0.78638 0.88927 2.99526 3.29892 3.42756 3.45046 3.54426 3.79067 4.12580 4.31257 4.36831 4.43681 4.71386 4.75320 4.79743 4.82114 4.90710 5.04305 5.10002 5.16960 5.23431 5.33262 5.36658 5.41485 5.45525 5.58843 5.60927 5.66708 5.68010 5.81043 5.85786 5.95296 6.04491 6.22548 6.36002 6.46313 6.62382 6.91833 6.93850 7.63098 7.95019 8.43857 9.17095 10.80704 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.047691 B = 0.002316 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.975753 B =12088.356692 C =12287.152679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.541 5.541 3 C 0.060 3.940 4 C -0.097 4.097 5 C -0.082 4.082 6 S -0.215 6.215 7 C -0.502 4.502 8 H 0.088 0.912 9 C 0.091 3.909 10 N -0.882 5.882 11 Si 0.862 3.138 12 H -0.268 1.268 13 H -0.276 1.276 14 H -0.238 1.238 15 C 0.062 3.938 16 C -0.081 4.081 17 C -0.034 4.034 18 C -0.169 4.169 19 C 0.099 3.901 20 N -0.492 5.492 21 C 0.098 3.902 22 C -0.172 4.172 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.025 0.975 26 H 0.075 0.925 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.270 0.730 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.136 0.864 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.396 -23.817 -11.774 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.265 5.265 3 C -0.069 4.069 4 C -0.136 4.136 5 C -0.231 4.231 6 S 0.013 5.987 7 C -0.649 4.649 8 H 0.106 0.894 9 C -0.118 4.118 10 N -0.519 5.519 11 Si 0.687 3.313 12 H -0.193 1.193 13 H -0.201 1.201 14 H -0.162 1.162 15 C -0.066 4.066 16 C -0.119 4.119 17 C -0.043 4.043 18 C -0.189 4.189 19 C -0.058 4.058 20 N -0.201 5.201 21 C -0.059 4.059 22 C -0.191 4.191 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.043 0.957 26 H 0.093 0.907 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.154 0.846 38 H 0.172 0.828 39 H 0.172 0.828 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.447 -24.699 -11.083 27.291 hybrid contribution -0.186 1.565 -0.370 1.619 sum -3.632 -23.134 -11.453 26.069 Atomic orbital electron populations 1.22517 0.87485 1.02001 1.01140 1.61968 1.08054 1.14348 1.42151 1.22183 1.00099 0.86957 0.97692 1.21343 1.01378 0.93926 0.96926 1.23016 1.02760 0.96955 1.00406 1.84151 1.75436 1.15847 1.23309 1.22127 1.40134 0.95162 1.07524 0.89446 1.24810 0.94507 0.94048 0.98388 1.69942 1.43146 1.03814 1.35000 0.86657 0.81785 0.79224 0.83593 1.19350 1.20136 1.16185 1.22044 1.00539 0.92154 0.91877 1.20678 1.01562 0.93942 0.95699 1.20350 0.93779 0.94821 0.95325 1.22132 0.96415 0.99581 1.00733 1.22792 0.99267 0.95115 0.88624 1.67682 1.06031 1.20038 1.26377 1.22764 0.91780 0.93258 0.98056 1.22085 1.01528 1.01107 0.94422 0.91482 0.90502 0.95682 0.90695 0.94745 0.91502 0.90646 0.91421 0.91628 0.91985 0.90544 0.94747 0.90358 0.89407 0.84564 0.82750 0.82847 0.84914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.13 60.06 0.55 0.71 16 2 N -0.54 -5.89 4.76 -242.91 -1.16 -7.05 16 3 C 0.06 0.75 4.96 -3.82 -0.02 0.73 16 4 C -0.10 -1.47 5.15 -26.73 -0.14 -1.61 16 5 C -0.08 -1.58 5.67 37.16 0.21 -1.37 16 6 S -0.22 -5.24 19.41 -107.50 -2.09 -7.33 16 7 C -0.50 -14.60 10.04 30.94 0.31 -14.29 16 8 H 0.09 2.70 8.03 -52.49 -0.42 2.28 16 9 C 0.09 2.66 5.50 -17.43 -0.10 2.56 16 10 N -0.88 -26.82 13.97 55.49 0.78 -26.04 16 11 Si 0.86 21.57 27.74 -169.99 -4.71 16.86 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 14 H -0.24 -5.82 6.74 56.52 0.38 -5.44 16 15 C 0.06 0.56 4.94 -3.82 -0.02 0.54 16 16 C -0.08 -0.61 5.32 -27.88 -0.15 -0.76 16 17 C -0.03 -0.27 5.17 -104.32 -0.54 -0.81 16 18 C -0.17 -1.29 9.82 -39.44 -0.39 -1.67 16 19 C 0.10 0.81 11.18 -17.55 -0.20 0.61 16 20 N -0.49 -4.81 10.36 -13.25 -0.14 -4.95 16 21 C 0.10 0.79 11.18 -17.55 -0.20 0.60 16 22 C -0.17 -1.28 9.82 -39.45 -0.39 -1.67 16 23 H 0.07 0.55 6.47 -51.93 -0.34 0.21 16 24 H 0.08 0.82 6.30 -51.93 -0.33 0.49 16 25 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.07 0.92 7.93 -51.93 -0.41 0.51 16 27 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 28 H 0.07 1.01 6.47 -51.93 -0.34 0.67 16 29 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 30 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 31 H 0.06 1.26 8.14 -51.91 -0.42 0.84 16 32 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.08 0.71 7.93 -51.93 -0.41 0.29 16 34 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16 35 H 0.08 0.55 6.51 -51.93 -0.34 0.21 16 36 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 37 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 40 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 LS Contribution 342.17 15.07 5.16 5.16 Total: -1.00 -32.11 342.17 -9.61 -41.72 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -6.38 Total: -1.94 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -1.06 Total: -16.42 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.52 Total: -38.04 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.71 Total: 16.86 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -2.09 Total: -7.33 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.11 -9.61 -41.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121625694.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.713 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds