Wall clock time and date at job start Tue Mar 31 2020 02:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.46949 * 2 1 4 4 C 1.46894 * 111.00059 * 288.04466 * 3 2 1 5 5 C 1.50703 * 109.46968 * 160.36309 * 4 3 2 6 6 H 1.08004 * 119.99733 * 4.65504 * 5 4 3 7 7 C 1.37872 * 120.00236 * 184.65973 * 5 4 3 8 8 N 1.31519 * 119.99932 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00422 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46847 * 89.99889 * 9 7 5 11 11 H 1.48496 * 109.47563 * 209.99879 * 9 7 5 12 12 H 1.48504 * 109.46915 * 330.00131 * 9 7 5 13 13 C 1.46903 * 110.99469 * 164.09600 * 3 2 1 14 14 C 1.50701 * 109.46904 * 293.95014 * 13 3 2 15 15 C 1.33638 * 126.03630 * 90.03054 * 14 13 3 16 16 N 1.31782 * 114.50389 * 179.97438 * 15 14 13 17 17 C 1.29024 * 117.12324 * 359.97438 * 16 15 14 18 18 C 1.50701 * 124.91873 * 180.02562 * 17 16 15 19 19 C 1.53783 * 113.61335 * 39.11491 * 18 17 16 20 20 C 1.53957 * 87.02002 * 220.05049 * 19 18 17 21 21 C 1.53784 * 113.61198 * 301.50876 * 18 17 16 22 22 S 1.70980 * 110.16653 * 359.72880 * 17 16 15 23 23 H 1.09004 * 109.46784 * 299.47605 * 1 2 3 24 24 H 1.08997 * 109.47458 * 59.47467 * 1 2 3 25 25 H 1.08997 * 109.47360 * 179.47507 * 1 2 3 26 26 H 1.09003 * 109.46466 * 240.00071 * 2 1 3 27 27 H 1.08999 * 109.47284 * 120.00331 * 2 1 3 28 28 H 1.08994 * 109.47482 * 280.36464 * 4 3 2 29 29 H 1.09004 * 109.47297 * 40.36304 * 4 3 2 30 30 H 0.96999 * 119.99964 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.47498 * 53.95431 * 13 3 2 32 32 H 1.08998 * 109.46760 * 173.95905 * 13 3 2 33 33 H 1.08007 * 122.75085 * 359.97438 * 15 14 13 34 34 H 1.08996 * 112.85186 * 170.31438 * 18 17 16 35 35 H 1.08994 * 113.61128 * 334.56985 * 19 18 17 36 36 H 1.08993 * 113.61288 * 105.47174 * 19 18 17 37 37 H 1.08999 * 113.53401 * 270.81090 * 20 19 18 38 38 H 1.08997 * 113.74108 * 139.94602 * 20 19 18 39 39 H 1.09001 * 113.61496 * 254.52146 * 21 18 17 40 40 H 1.08991 * 113.61792 * 25.43369 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7946 2.0229 -1.3039 5 6 1.8461 3.5208 -1.1459 6 1 2.1020 3.9545 -0.1904 7 6 1.5664 4.3374 -2.2209 8 7 1.2542 3.8093 -3.3843 9 14 1.6295 6.1940 -2.0249 10 1 2.9997 6.6778 -2.3312 11 1 0.6620 6.8237 -2.9590 12 1 1.2772 6.5566 -0.6286 13 6 3.4386 1.4416 0.3758 14 6 3.5962 1.0056 1.8098 15 6 3.8059 -0.2446 2.2329 16 7 3.9104 -0.3687 3.5406 17 6 3.8011 0.7073 4.2443 18 6 3.8922 0.7681 5.7473 19 6 4.9665 -0.1608 6.3373 20 6 3.9617 -0.4770 7.4602 21 6 2.8504 -0.1074 6.4635 22 16 3.5460 2.0554 3.2240 23 1 -0.3633 0.5057 0.8947 24 1 -0.3634 0.5219 -0.8852 25 1 -0.3634 -1.0276 -0.0094 26 1 1.8932 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.5682 1.7045 -2.0026 29 1 0.8167 1.7314 -1.6871 30 1 1.0579 4.3839 -4.1407 31 1 4.0126 0.7780 -0.2709 32 1 3.8035 2.4627 0.2644 33 1 3.8833 -1.0845 1.5583 34 1 3.9406 1.7884 6.1275 35 1 5.1981 -1.0175 5.7047 36 1 5.8567 0.3651 6.6821 37 1 4.0302 0.2026 8.3096 38 1 3.9511 -1.5257 7.7569 39 1 2.0349 0.4614 6.9102 40 1 2.5025 -0.9496 5.8655 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127673788.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:33 Heat of formation + Delta-G solvation = 42.653248 kcal Electronic energy + Delta-G solvation = -19444.014183 eV Core-core repulsion = 16578.260907 eV Total energy + Delta-G solvation = -2865.753276 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.04519 -39.33192 -38.35321 -34.80617 -32.88101 -31.38506 -29.31094 -27.81074 -26.48853 -25.65145 -24.58099 -24.10932 -21.64785 -21.25659 -19.32456 -19.02482 -18.57584 -16.89232 -16.84989 -16.47753 -16.06841 -15.77555 -15.43406 -15.20256 -15.08741 -14.42496 -13.99673 -13.68372 -13.43063 -13.34032 -13.25247 -13.03439 -12.89462 -12.72845 -12.65510 -12.44014 -12.13391 -12.02262 -11.76533 -11.58386 -11.41184 -11.33259 -11.27679 -10.60049 -10.42644 -10.15776 -9.68376 -9.05686 -8.19667 -6.29287 -0.22507 0.43816 0.90256 1.40615 1.41717 1.53259 1.83461 2.40363 3.11398 3.17097 3.33846 3.76926 3.78536 3.87000 3.95071 4.01933 4.16292 4.20479 4.39205 4.42181 4.62897 4.65837 4.73188 4.79144 4.86712 4.93720 4.94465 4.99559 5.08723 5.14385 5.20204 5.23992 5.24993 5.28022 5.33506 5.61811 5.65916 6.06822 6.31455 6.57694 6.78740 6.85138 7.39991 8.90735 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.024060 B = 0.004138 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.455230 B = 6764.401574 C = 7413.189438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.046 3.954 3 N -0.538 5.538 4 C 0.207 3.793 5 C -0.520 4.520 6 H 0.059 0.941 7 C 0.004 3.996 8 N -0.933 5.933 9 Si 0.964 3.036 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.266 1.266 13 C 0.140 3.860 14 C -0.209 4.209 15 C 0.030 3.970 16 N -0.486 5.486 17 C 0.052 3.948 18 C -0.049 4.049 19 C -0.119 4.119 20 C -0.128 4.128 21 C -0.123 4.123 22 S 0.133 5.867 23 H 0.052 0.948 24 H 0.035 0.965 25 H 0.077 0.923 26 H 0.023 0.977 27 H 0.080 0.920 28 H -0.036 1.036 29 H 0.017 0.983 30 H 0.264 0.736 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.181 0.819 34 H 0.125 0.875 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.698 -7.581 19.558 21.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.082 4.082 3 N -0.263 5.263 4 C 0.081 3.919 5 C -0.558 4.558 6 H 0.077 0.923 7 C -0.194 4.194 8 N -0.574 5.574 9 Si 0.788 3.212 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.190 1.190 13 C 0.010 3.990 14 C -0.331 4.331 15 C -0.121 4.121 16 N -0.200 5.200 17 C -0.225 4.225 18 C -0.071 4.071 19 C -0.159 4.159 20 C -0.165 4.165 21 C -0.162 4.162 22 S 0.390 5.610 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.096 0.904 26 H 0.041 0.959 27 H 0.099 0.901 28 H -0.018 1.018 29 H 0.035 0.965 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.198 0.802 34 H 0.143 0.857 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.328 -6.683 20.132 21.871 hybrid contribution 0.340 -0.226 -2.112 2.151 sum 5.669 -6.909 18.021 20.115 Atomic orbital electron populations 1.21679 0.94780 1.01587 1.01297 1.22159 0.96679 0.89264 1.00065 1.62108 1.15815 1.16458 1.31877 1.19443 0.94514 0.93819 0.84074 1.21429 1.46233 0.91864 0.96276 0.92325 1.25841 0.94872 1.03868 0.94787 1.70073 1.48375 1.37074 1.01871 0.85464 0.78096 0.79343 0.78248 1.19796 1.20758 1.19031 1.20190 0.89920 1.00901 0.88008 1.25810 1.10554 0.96797 0.99932 1.21784 1.03018 0.96355 0.90965 1.66173 1.17711 1.30593 1.05518 1.27372 1.02369 0.90972 1.01800 1.21603 1.00773 1.01736 0.82970 1.22926 0.96753 0.98712 0.97462 1.22822 0.94441 1.02741 0.96493 1.22916 0.96881 0.98907 0.97495 1.84061 1.65900 1.13634 0.97432 0.92936 0.94540 0.90411 0.95922 0.90148 1.01798 0.96470 0.92711 0.93377 0.90902 0.80238 0.85684 0.90585 0.89952 0.88060 0.90547 0.89984 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 9.98 71.98 0.72 -4.01 16 2 C 0.05 1.69 5.55 86.30 0.48 2.17 16 3 N -0.54 -23.28 4.37 -905.37 -3.96 -27.24 16 4 C 0.21 10.96 4.59 85.56 0.39 11.35 16 5 C -0.52 -29.37 8.61 25.60 0.22 -29.15 16 6 H 0.06 3.28 7.66 -2.91 -0.02 3.26 16 7 C 0.00 0.25 5.46 84.65 0.46 0.71 16 8 N -0.93 -55.91 13.29 21.45 0.28 -55.63 16 9 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 C 0.14 5.39 5.32 85.56 0.46 5.85 16 14 C -0.21 -6.90 5.55 24.64 0.14 -6.77 16 15 C 0.03 0.91 9.62 83.66 0.80 1.71 16 16 N -0.49 -14.10 10.08 -191.44 -1.93 -16.03 16 17 C 0.05 1.37 6.47 88.52 0.57 1.94 16 18 C -0.05 -0.92 4.24 -11.01 -0.05 -0.97 16 19 C -0.12 -1.94 7.63 31.18 0.24 -1.70 16 20 C -0.13 -1.61 8.09 31.18 0.25 -1.36 16 21 C -0.12 -2.07 7.63 31.12 0.24 -1.83 16 22 S 0.13 3.90 23.18 -56.49 -1.31 2.59 16 23 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 24 H 0.04 1.44 6.52 -2.39 -0.02 1.42 16 25 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.02 0.83 8.05 -2.39 -0.02 0.81 16 27 H 0.08 2.63 5.46 -2.39 -0.01 2.62 16 28 H -0.04 -2.02 8.00 -2.39 -0.02 -2.04 16 29 H 0.02 0.98 6.24 -2.39 -0.01 0.97 16 30 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 31 H 0.05 1.78 8.12 -2.39 -0.02 1.76 16 32 H 0.07 3.08 7.32 -2.39 -0.02 3.06 16 33 H 0.18 4.78 7.86 -2.91 -0.02 4.75 16 34 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.08 1.53 7.74 -2.39 -0.02 1.51 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 Total: -1.00 -64.01 336.88 1.05 -62.96 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 1.01 Total: 9.11 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: 4.92 Total: -22.05 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -5.60 Total: -98.90 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -1.31 Total: 2.59 kcal Total: -64.01 1.05 -62.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127673788.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.612 kcal (2) G-P(sol) polarization free energy of solvation -64.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds