Wall clock time and date at job start Tue Mar 31 2020 03:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00048 * 2 1 4 4 C 1.50701 * 109.47534 * 270.00194 * 3 2 1 5 5 H 1.07997 * 119.99748 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99912 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00286 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99802 * 180.02562 * 6 4 3 9 9 H 1.48489 * 109.47274 * 90.00359 * 8 6 4 10 10 H 1.48502 * 109.47211 * 210.00316 * 8 6 4 11 11 H 1.48503 * 109.47067 * 330.00031 * 8 6 4 12 12 C 1.34778 * 119.99913 * 180.02562 * 2 1 3 13 13 O 1.21590 * 120.00117 * 179.97438 * 12 2 1 14 14 N 1.34775 * 120.00141 * 359.97438 * 12 2 1 15 15 C 1.46503 * 120.00092 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.46972 * 179.97438 * 15 14 12 17 17 C 1.50699 * 109.47204 * 179.97438 * 16 15 14 18 18 C 1.38250 * 119.97575 * 270.32991 * 17 16 15 19 19 C 1.38194 * 120.02377 * 180.27953 * 18 17 16 20 20 C 1.38460 * 119.97497 * 359.41202 * 19 18 17 21 21 F 1.35105 * 120.02800 * 180.30394 * 20 19 18 22 22 C 1.38467 * 119.94896 * 0.28520 * 20 19 18 23 23 C 1.38197 * 119.97188 * 359.97438 * 22 20 19 24 24 H 1.08998 * 109.47284 * 269.99824 * 1 2 3 25 25 H 1.09002 * 109.47041 * 29.99666 * 1 2 3 26 26 H 1.09001 * 109.47254 * 149.99336 * 1 2 3 27 27 H 1.08995 * 109.46980 * 30.00570 * 3 2 1 28 28 H 1.09004 * 109.47242 * 149.99905 * 3 2 1 29 29 H 0.96997 * 119.99846 * 180.02562 * 7 6 4 30 30 H 0.96999 * 119.99695 * 359.97438 * 14 12 2 31 31 H 1.09000 * 109.46902 * 59.99873 * 15 14 12 32 32 H 1.08995 * 109.46871 * 300.00027 * 15 14 12 33 33 H 1.09007 * 109.46864 * 60.00080 * 16 15 14 34 34 H 1.08994 * 109.47451 * 300.00424 * 16 15 14 35 35 H 1.07998 * 119.98560 * 359.97438 * 18 17 16 36 36 H 1.08002 * 120.01531 * 179.69754 * 19 18 17 37 37 H 1.07998 * 120.01314 * 180.02562 * 22 20 19 38 38 H 1.07994 * 119.98607 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1260 2.8781 -1.6726 7 7 3.5533 3.6182 -0.6729 8 14 3.4367 3.4178 -3.4337 9 1 2.3064 4.2604 -3.8999 10 1 4.6968 4.2010 -3.4965 11 1 3.5540 2.2208 -4.3049 12 6 2.1389 -1.1672 -0.0005 13 8 3.3548 -1.1673 -0.0010 14 7 1.4650 -2.3344 -0.0005 15 6 2.1975 -3.6032 -0.0005 16 6 1.2032 -4.7661 0.0001 17 6 1.9567 -6.0712 -0.0005 18 6 2.3071 -6.6659 -1.1984 19 6 2.9930 -7.8656 -1.2001 20 6 3.3399 -8.4659 -0.0016 21 9 4.0158 -9.6357 -0.0021 22 6 2.9938 -7.8662 1.1975 23 6 2.3032 -6.6692 1.1968 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 1.6085 2.0283 0.5139 28 1 3.1500 1.1384 0.5139 29 1 4.0295 4.4444 -0.8502 30 1 0.4950 -2.3344 0.0002 31 1 2.8242 -3.6609 0.8895 32 1 2.8241 -3.6609 -0.8905 33 1 0.5762 -4.7085 -0.8897 34 1 0.5769 -4.7081 0.8902 35 1 2.0405 -6.1951 -2.1331 36 1 3.2624 -8.3325 -2.1360 37 1 3.2642 -8.3333 2.1329 38 1 2.0336 -6.2010 2.1319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139557090.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:13 Heat of formation + Delta-G solvation = -73.879488 kcal Electronic energy + Delta-G solvation = -20680.613092 eV Core-core repulsion = 17243.593401 eV Total energy + Delta-G solvation = -3437.019691 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.89556 -41.00267 -40.10294 -36.83932 -36.20572 -34.71661 -33.25183 -32.06984 -29.98271 -28.77461 -27.21208 -25.23786 -24.00133 -23.87458 -22.13349 -20.89685 -18.86116 -18.64164 -18.57170 -17.46809 -17.43526 -16.63788 -16.57109 -16.53113 -16.18443 -15.38726 -15.22545 -14.99051 -14.67932 -14.45807 -14.35613 -14.03887 -13.73568 -13.63484 -13.43024 -13.09834 -12.83040 -12.59331 -12.54062 -12.44420 -12.34004 -12.17115 -11.83691 -11.69049 -11.04551 -10.61306 -10.11708 -10.02978 -9.53679 -9.26947 -8.18814 -6.33929 0.12927 0.29778 1.37793 1.41226 1.51400 1.91582 2.32720 2.43911 2.61490 3.09605 3.24293 3.31741 3.77777 3.88593 4.00723 4.12258 4.15549 4.36727 4.39238 4.47272 4.62662 4.72036 4.87972 4.91536 4.99773 5.05240 5.05491 5.15619 5.18354 5.25281 5.28821 5.59387 5.59685 5.62583 5.84556 5.94489 6.10402 6.22496 6.75652 7.24971 7.33751 7.80104 8.87533 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028157 B = 0.002891 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.194799 B = 9683.765471 C =10119.374917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.628 5.628 3 C 0.274 3.726 4 C -0.541 4.541 5 H 0.052 0.948 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.262 1.262 10 H -0.282 1.282 11 H -0.274 1.274 12 C 0.691 3.309 13 O -0.646 6.646 14 N -0.733 5.733 15 C 0.145 3.855 16 C -0.075 4.075 17 C -0.094 4.094 18 C -0.089 4.089 19 C -0.159 4.159 20 C 0.071 3.929 21 F -0.152 7.152 22 C -0.158 4.158 23 C -0.087 4.087 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.027 0.973 28 H -0.004 1.004 29 H 0.267 0.733 30 H 0.411 0.589 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.233 -22.455 1.772 24.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.363 5.363 3 C 0.152 3.848 4 C -0.580 4.580 5 H 0.070 0.930 6 C -0.193 4.193 7 N -0.570 5.570 8 Si 0.793 3.207 9 H -0.187 1.187 10 H -0.207 1.207 11 H -0.199 1.199 12 C 0.392 3.608 13 O -0.528 6.528 14 N -0.393 5.393 15 C 0.020 3.980 16 C -0.112 4.112 17 C -0.095 4.095 18 C -0.107 4.107 19 C -0.178 4.178 20 C 0.052 3.948 21 F -0.131 7.131 22 C -0.177 4.177 23 C -0.105 4.105 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.045 0.955 28 H 0.014 0.986 29 H 0.076 0.924 30 H 0.249 0.751 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.167 0.833 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.275 -22.324 1.825 24.243 hybrid contribution 0.467 0.322 -0.697 0.898 sum -8.808 -22.003 1.128 23.727 Atomic orbital electron populations 1.21839 0.78043 1.03788 1.02401 1.47324 1.07870 1.05016 1.76098 1.18650 0.90848 0.79390 0.95864 1.21737 1.36677 1.06370 0.93193 0.93017 1.25868 0.94950 0.96476 1.01999 1.70053 1.39104 1.14800 1.33012 0.85401 0.78078 0.78135 0.79086 1.18679 1.20700 1.19896 1.16201 0.84951 0.81555 0.78092 1.90843 1.14585 1.87093 1.60285 1.45009 1.10181 1.03431 1.80639 1.21132 0.94648 0.81161 1.01026 1.20694 0.96445 0.88123 1.05944 1.19911 0.99625 0.96638 0.93335 1.21228 0.96405 0.93979 0.99102 1.21363 1.01488 0.97438 0.97504 1.18053 0.97426 0.83627 0.95722 1.91470 1.78090 1.45972 1.97540 1.21378 1.01382 0.97482 0.97445 1.21236 0.96263 0.93934 0.99066 0.91237 0.91323 0.89305 0.95498 0.98588 0.92421 0.75056 0.93173 0.93696 0.88194 0.87816 0.83300 0.83552 0.83378 0.82959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.34 10.20 127.77 1.30 3.65 16 2 N -0.63 -27.07 2.86 -869.31 -2.48 -29.55 16 3 C 0.27 15.11 5.16 85.63 0.44 15.56 16 4 C -0.54 -31.70 9.39 25.60 0.24 -31.46 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 6 C 0.01 0.34 5.46 84.65 0.46 0.80 16 7 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 8 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 9 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 12 C 0.69 29.87 8.28 179.05 1.48 31.35 16 13 O -0.65 -35.54 15.92 -4.00 -0.06 -35.60 16 14 N -0.73 -20.88 5.42 -478.53 -2.59 -23.48 16 15 C 0.14 3.55 5.66 86.38 0.49 4.04 16 16 C -0.07 -1.03 5.46 29.85 0.16 -0.87 16 17 C -0.09 -1.47 5.13 -19.86 -0.10 -1.57 16 18 C -0.09 -1.40 9.70 22.26 0.22 -1.18 16 19 C -0.16 -2.70 10.03 22.31 0.22 -2.48 16 20 C 0.07 1.35 7.30 22.38 0.16 1.51 16 21 F -0.15 -3.21 17.27 44.97 0.78 -2.44 16 22 C -0.16 -2.60 10.03 22.31 0.22 -2.38 16 23 C -0.09 -1.30 9.70 22.26 0.22 -1.09 16 24 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 26 H 0.09 1.83 6.36 -2.39 -0.02 1.81 16 27 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 28 H 0.00 -0.26 7.42 -2.38 -0.02 -0.28 16 29 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.41 8.21 6.20 -92.71 -0.58 7.63 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.10 1.07 8.09 -2.38 -0.02 1.05 16 34 H 0.10 1.03 8.09 -2.39 -0.02 1.01 16 35 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 36 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 38 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -79.52 332.18 3.96 -75.56 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 0.49 Total: 8.86 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 5.52 Total: 15.88 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -4.79 Total: -109.64 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -0.06 Total: -35.60 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.78 Total: -2.44 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -79.52 3.96 -75.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139557090.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.685 kcal (2) G-P(sol) polarization free energy of solvation -79.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds