Wall clock time and date at job start Tue Mar 31 2020 01:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76197 * 103.00239 * 2 1 4 4 C 1.39466 * 120.41414 * 180.02562 * 3 2 1 5 5 C 1.38265 * 118.44087 * 180.02562 * 4 3 2 6 6 C 1.39097 * 119.17635 * 359.97438 * 5 4 3 7 7 N 1.39324 * 119.62232 * 180.02562 * 6 5 4 8 8 C 1.46501 * 119.99360 * 359.97438 * 7 6 5 9 9 C 1.53007 * 109.46574 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47088 * 299.99798 * 9 8 7 11 11 C 1.52996 * 109.46992 * 59.99992 * 9 8 7 12 12 C 1.52996 * 109.46846 * 179.97438 * 9 8 7 13 13 C 1.50698 * 109.47287 * 180.02562 * 12 9 8 14 14 H 1.08003 * 119.99622 * 359.97438 * 13 12 9 15 15 C 1.37876 * 120.00612 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99670 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00503 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46980 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47160 * 119.99454 * 17 15 13 20 20 H 1.48496 * 109.47127 * 239.99575 * 17 15 13 21 21 N 1.32335 * 120.76220 * 359.97438 * 6 5 4 22 22 C 1.31980 * 121.70124 * 0.02562 * 21 6 5 23 23 H 1.08999 * 109.47137 * 300.00337 * 1 2 3 24 24 H 1.09001 * 109.46545 * 60.00477 * 1 2 3 25 25 H 1.09000 * 109.46808 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.78493 * 359.97438 * 4 3 2 27 27 H 1.07998 * 120.41462 * 179.72609 * 5 4 3 28 28 H 0.96993 * 120.00153 * 180.02562 * 7 6 5 29 29 H 1.09007 * 109.47093 * 299.99655 * 8 7 6 30 30 H 1.08995 * 109.47798 * 60.00345 * 8 7 6 31 31 H 1.09000 * 109.46965 * 60.00333 * 10 9 8 32 32 H 1.09001 * 109.46961 * 180.02562 * 10 9 8 33 33 H 1.08998 * 109.46941 * 300.00214 * 10 9 8 34 34 H 1.09007 * 109.47601 * 59.99931 * 11 9 8 35 35 H 1.09001 * 109.47032 * 179.97438 * 11 9 8 36 36 H 1.09000 * 109.47379 * 299.99862 * 11 9 8 37 37 H 1.08999 * 109.47483 * 300.00089 * 12 9 8 38 38 H 1.09006 * 109.46825 * 60.00194 * 12 9 8 39 39 H 0.96994 * 120.00173 * 180.02562 * 16 15 13 40 40 H 1.07993 * 119.62622 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 3.5412 2.1341 -0.0005 5 6 3.8057 3.4912 0.0000 6 6 2.7434 4.3891 0.0006 7 7 2.9993 5.7587 0.0006 8 6 4.3810 6.2456 0.0006 9 6 4.3825 7.7756 0.0013 10 6 3.6617 8.2869 -1.2476 11 6 3.6619 8.2857 1.2508 12 6 5.8255 8.2842 0.0020 13 6 5.8271 9.7911 0.0033 14 1 4.8922 10.3321 0.0032 15 6 7.0217 10.4794 0.0035 16 7 8.1600 9.8207 0.0032 17 14 7.0236 12.3474 0.0044 18 1 5.6241 12.8438 0.0041 19 1 7.7241 12.8411 1.2172 20 1 7.7242 12.8422 -1.2078 21 7 1.4924 3.9576 0.0000 22 6 1.2029 2.6699 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 4.3463 1.4142 -0.0005 27 1 4.8245 3.8497 0.0041 28 1 2.2627 6.3897 0.0013 29 1 4.8945 5.8817 0.8907 30 1 4.8946 5.8818 -0.8893 31 1 2.6336 7.9245 -1.2476 32 1 3.6631 9.3769 -1.2473 33 1 4.1750 7.9234 -2.1378 34 1 4.1755 7.9215 2.1407 35 1 3.6634 9.3757 1.2516 36 1 2.6339 7.9234 1.2508 37 1 6.3387 7.9199 0.8919 38 1 6.3392 7.9207 -0.8881 39 1 9.0005 10.3048 0.0037 40 1 0.1700 2.3550 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150879923.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:24 Heat of formation + Delta-G solvation = 5.274631 kcal Electronic energy + Delta-G solvation = -19194.003851 eV Core-core repulsion = 16326.629716 eV Total energy + Delta-G solvation = -2867.374135 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.18250 -39.15212 -35.84924 -34.24657 -33.43404 -31.16564 -29.56997 -28.84753 -27.98797 -27.46353 -25.06708 -24.38024 -23.19561 -19.86281 -18.77949 -18.38978 -18.27795 -17.50503 -16.53091 -16.02597 -15.78110 -15.60000 -15.48457 -15.15225 -14.68234 -14.41186 -14.37563 -14.12256 -13.94922 -13.88968 -13.59563 -12.94991 -12.81382 -12.68803 -12.68156 -12.35292 -12.23743 -11.95749 -11.80512 -11.58554 -11.45536 -11.01246 -10.85489 -10.77942 -10.51201 -10.35993 -9.44473 -8.14635 -7.96891 -6.20935 0.20513 0.34403 0.66373 1.40416 1.42520 1.53273 1.55943 2.20146 2.44741 2.82703 3.20370 3.59913 3.87467 3.94326 4.03707 4.08256 4.20692 4.25608 4.33172 4.37040 4.67477 4.69425 4.72412 4.72730 4.90855 4.95125 4.95876 5.00965 5.10385 5.12731 5.38350 5.47321 5.48608 5.50761 5.56272 5.79873 5.90063 6.00004 6.32718 6.61198 6.93809 7.13499 7.46437 8.97764 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.051038 B = 0.002877 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.483271 B = 9728.959043 C =10075.776968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.136 6.136 3 C -0.213 4.213 4 C -0.015 4.015 5 C -0.231 4.231 6 C 0.389 3.611 7 N -0.711 5.711 8 C 0.148 3.852 9 C -0.063 4.063 10 C -0.121 4.121 11 C -0.121 4.121 12 C 0.041 3.959 13 C -0.513 4.513 14 H 0.067 0.933 15 C -0.002 4.002 16 N -0.935 5.935 17 Si 0.953 3.047 18 H -0.261 1.261 19 H -0.284 1.284 20 H -0.284 1.284 21 N -0.553 5.553 22 C 0.137 3.863 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.127 0.873 26 H 0.152 0.848 27 H 0.141 0.859 28 H 0.405 0.595 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.052 0.948 36 H 0.058 0.942 37 H -0.007 1.007 38 H -0.007 1.007 39 H 0.260 0.740 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.214 -17.508 -0.005 23.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.101 5.899 3 C -0.329 4.329 4 C -0.045 4.045 5 C -0.258 4.258 6 C 0.151 3.849 7 N -0.344 5.344 8 C 0.023 3.977 9 C -0.063 4.063 10 C -0.179 4.179 11 C -0.179 4.179 12 C 0.004 3.996 13 C -0.551 4.551 14 H 0.085 0.915 15 C -0.199 4.199 16 N -0.577 5.577 17 Si 0.779 3.221 18 H -0.185 1.185 19 H -0.210 1.210 20 H -0.210 1.210 21 N -0.271 5.271 22 C -0.026 4.026 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.145 0.855 26 H 0.170 0.830 27 H 0.159 0.841 28 H 0.242 0.758 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.011 0.989 38 H 0.011 0.989 39 H 0.069 0.931 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -14.850 -17.795 -0.005 23.177 hybrid contribution 0.350 1.878 0.002 1.911 sum -14.500 -15.917 -0.004 21.531 Atomic orbital electron populations 1.23759 0.91896 1.08610 1.06411 1.85330 1.09640 1.01157 1.93733 1.22452 0.97406 0.98751 1.14328 1.21170 0.95434 0.95107 0.92802 1.21541 0.99830 0.93258 1.11172 1.18645 0.89300 0.86102 0.90852 1.44735 1.08296 1.02138 1.79188 1.21391 0.81328 0.94174 1.00764 1.20666 0.97328 0.91938 0.96371 1.21676 0.98703 1.01256 0.96230 1.21679 0.98700 1.01263 0.96226 1.18966 0.90588 0.95184 0.94888 1.21609 0.92279 0.92674 1.48568 0.91517 1.25860 0.95599 1.02864 0.95577 1.70094 0.97856 1.37040 1.52670 0.85564 0.78481 0.80675 0.77345 1.18530 1.20983 1.20994 1.67115 1.20282 1.18320 1.21401 1.22824 0.99529 0.86323 0.93973 0.88989 0.88994 0.85485 0.83005 0.84112 0.75755 0.92340 0.92326 0.92290 0.92925 0.94010 0.94012 0.92922 0.92296 0.98868 0.98871 0.93144 0.80752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.16 113.37 1.04 -0.29 16 2 S -0.14 -2.36 22.58 -56.49 -1.28 -3.64 16 3 C -0.21 -4.74 6.12 22.67 0.14 -4.60 16 4 C -0.01 -0.35 9.93 22.57 0.22 -0.12 16 5 C -0.23 -6.15 9.32 22.48 0.21 -5.94 16 6 C 0.39 11.26 7.65 132.96 1.02 12.28 16 7 N -0.71 -20.56 5.14 -344.85 -1.77 -22.33 16 8 C 0.15 4.72 3.78 86.38 0.33 5.05 16 9 C -0.06 -2.30 0.54 -52.18 -0.03 -2.33 16 10 C -0.12 -4.20 8.05 71.98 0.58 -3.62 16 11 C -0.12 -4.20 8.05 71.98 0.58 -3.62 16 12 C 0.04 2.01 4.04 29.85 0.12 2.13 16 13 C -0.51 -27.11 7.65 25.60 0.20 -26.92 16 14 H 0.07 3.38 5.68 -2.91 -0.02 3.36 16 15 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 16 N -0.94 -55.50 13.29 21.45 0.28 -55.21 16 17 Si 0.95 43.36 29.54 68.60 2.03 45.39 16 18 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 21 N -0.55 -15.55 10.39 -192.55 -2.00 -17.55 16 22 C 0.14 3.15 10.53 84.78 0.89 4.04 16 23 H 0.09 0.77 7.76 -2.39 -0.02 0.76 16 24 H 0.09 0.77 7.76 -2.39 -0.02 0.75 16 25 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 27 H 0.14 3.58 6.70 -2.91 -0.02 3.56 16 28 H 0.41 11.31 6.29 -92.71 -0.58 10.73 16 29 H 0.06 1.89 7.92 -2.38 -0.02 1.87 16 30 H 0.06 1.89 7.93 -2.39 -0.02 1.88 16 31 H 0.06 1.71 6.86 -2.39 -0.02 1.69 16 32 H 0.05 1.97 6.62 -2.39 -0.02 1.95 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.05 1.97 6.62 -2.39 -0.02 1.95 16 36 H 0.06 1.70 6.86 -2.39 -0.02 1.69 16 37 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 38 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 39 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 40 H 0.18 2.91 5.89 -2.91 -0.02 2.90 16 Total: -1.00 -62.46 332.50 3.47 -58.98 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.45 Total: 17.94 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: 5.76 Total: -23.58 kcal Atomic # 7 Polarization: -91.61 SS G_CDS: -3.49 Total: -95.10 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -2.36 SS G_CDS: -1.28 Total: -3.64 kcal Total: -62.46 3.47 -58.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150879923.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.257 kcal (2) G-P(sol) polarization free energy of solvation -62.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds