Wall clock time and date at job start Tue Mar 31 2020 02:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46501 * 109.47093 * 2 1 4 4 C 1.46500 * 119.99528 * 269.72186 * 3 2 1 5 5 C 1.50701 * 109.47478 * 270.27427 * 4 3 2 6 6 H 1.08004 * 119.99972 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00450 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99569 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00218 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46910 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47191 * 119.99477 * 9 7 5 12 12 H 1.48492 * 109.47154 * 239.99840 * 9 7 5 13 13 C 1.34770 * 120.00059 * 90.00295 * 3 2 1 14 14 O 1.21596 * 119.99711 * 179.72671 * 13 3 2 15 15 N 1.34773 * 120.00501 * 359.71668 * 13 3 2 16 16 C 1.39938 * 120.00390 * 174.64109 * 15 13 3 17 17 C 1.38908 * 120.05533 * 146.45802 * 16 15 13 18 18 C 1.38100 * 119.97487 * 179.72840 * 17 16 15 19 19 C 1.50705 * 119.95212 * 180.31978 * 18 17 16 20 20 C 1.38266 * 120.09999 * 0.57201 * 18 17 16 21 21 C 1.38493 * 120.10941 * 359.70190 * 20 18 17 22 22 F 1.35104 * 119.98571 * 180.02562 * 21 20 18 23 23 C 1.38352 * 120.01946 * 359.97438 * 21 20 18 24 24 H 1.08998 * 109.47663 * 300.00167 * 1 2 3 25 25 H 1.08999 * 109.47120 * 60.00445 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47663 * 239.99833 * 2 1 3 28 28 H 1.09005 * 109.47512 * 119.99750 * 2 1 3 29 29 H 1.09003 * 109.47309 * 30.27553 * 4 3 2 30 30 H 1.09002 * 109.46901 * 150.27826 * 4 3 2 31 31 H 0.97002 * 119.99713 * 180.02562 * 8 7 5 32 32 H 0.97001 * 119.99693 * 354.64538 * 15 13 3 33 33 H 1.08000 * 120.00939 * 0.02601 * 17 16 15 34 34 H 1.08997 * 109.46901 * 270.25368 * 19 18 17 35 35 H 1.09004 * 109.46972 * 30.25229 * 19 18 17 36 36 H 1.09000 * 109.47552 * 150.25090 * 19 18 17 37 37 H 1.07995 * 119.94733 * 179.72869 * 20 18 17 38 38 H 1.07997 * 120.04483 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2682 2.0697 -1.2688 5 6 3.6914 1.8267 -1.7004 6 1 4.3445 1.2197 -1.0908 7 6 4.1601 2.3791 -2.8735 8 7 3.3648 3.1179 -3.6161 9 14 5.9240 2.0773 -3.4088 10 1 6.6052 1.2183 -2.4071 11 1 5.9312 1.3978 -4.7293 12 1 6.6378 3.3750 -3.5159 13 6 2.2429 2.0165 1.1671 14 8 2.6530 3.1613 1.1671 15 7 2.0129 1.3832 2.3344 16 6 2.3512 2.0004 3.5439 17 6 1.5775 1.7820 4.6766 18 6 1.9161 2.3875 5.8708 19 6 1.0805 2.1445 7.1011 20 6 3.0177 3.2205 5.9380 21 6 3.7885 3.4454 4.8096 22 9 4.8646 4.2594 4.8782 23 6 3.4575 2.8360 3.6124 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5875 1.6877 -2.0297 30 1 2.1054 3.1397 -1.1397 31 1 3.6943 3.5063 -4.4416 32 1 1.6130 0.4995 2.3360 33 1 0.7142 1.1351 4.6246 34 1 0.2864 2.8893 7.1539 35 1 0.6414 1.1481 7.0511 36 1 1.7092 2.2203 7.9883 37 1 3.2777 3.6961 6.8720 38 1 4.0585 3.0108 2.7324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152858412.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:04 Heat of formation + Delta-G solvation = -49.329948 kcal Electronic energy + Delta-G solvation = -21702.699264 eV Core-core repulsion = 18266.744121 eV Total energy + Delta-G solvation = -3435.955143 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.70359 -40.34865 -38.59958 -35.59276 -34.63582 -32.79039 -32.02293 -30.20889 -29.57435 -27.11158 -26.87416 -23.45861 -23.11103 -22.24380 -21.45779 -19.34947 -18.00561 -17.08467 -16.52034 -16.18756 -16.08801 -15.71753 -15.42141 -14.78601 -14.56760 -14.07610 -13.80475 -13.66759 -13.35354 -13.30455 -13.20705 -12.63960 -12.20785 -12.12207 -11.94244 -11.81336 -11.69656 -11.34518 -11.24055 -10.95860 -10.82886 -10.57974 -10.15345 -10.02132 -9.66315 -9.34929 -8.54424 -8.45125 -8.08226 -7.67815 -6.05970 -4.10682 1.24047 1.31310 3.05545 3.29408 3.37493 3.41632 3.50331 3.94248 4.23068 4.41118 4.48082 4.71817 5.03047 5.13257 5.18520 5.22682 5.28578 5.42031 5.45501 5.50672 5.56607 5.62415 5.70299 5.88834 6.02760 6.13383 6.20426 6.38571 6.38887 6.42263 6.67046 6.77179 7.15079 7.31462 7.45623 7.61251 7.91563 8.20639 8.50285 8.89947 9.16252 9.54866 11.02021 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018816 B = 0.004763 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.770981 B = 5877.230970 C = 7017.051778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 N -0.604 5.604 4 C 0.260 3.740 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.697 3.303 14 O -0.565 6.565 15 N -0.695 5.695 16 C 0.217 3.783 17 C -0.170 4.170 18 C -0.042 4.042 19 C -0.111 4.111 20 C -0.185 4.185 21 C 0.124 3.876 22 F -0.139 7.139 23 C -0.165 4.165 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.263 0.737 32 H 0.404 0.596 33 H 0.128 0.872 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.131 0.869 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.448 -7.007 17.487 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.339 5.339 4 C 0.141 3.859 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.398 3.602 14 O -0.440 6.440 15 N -0.344 5.344 16 C 0.120 3.880 17 C -0.191 4.191 18 C -0.042 4.042 19 C -0.167 4.167 20 C -0.205 4.205 21 C 0.104 3.896 22 F -0.118 7.118 23 C -0.186 4.186 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.241 0.759 33 H 0.146 0.854 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.149 0.851 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.112 -6.054 17.134 19.172 hybrid contribution 0.970 -0.437 -0.535 1.191 sum -5.141 -6.491 16.599 18.549 Atomic orbital electron populations 1.22258 0.96619 1.01547 1.02583 1.21401 0.93585 0.84288 1.02664 1.47639 1.66811 1.13258 1.06197 1.19261 0.96277 0.93582 0.76822 1.21484 0.97006 1.31842 1.06288 0.92409 1.24922 0.97874 0.94876 0.96364 1.69940 1.35679 1.33409 1.14289 0.86444 0.84615 0.78104 0.78266 1.19830 1.20968 1.20839 1.15964 0.79365 0.84742 0.80089 1.90930 1.51176 1.16469 1.85458 1.43042 1.66566 1.21132 1.03668 1.17185 0.91833 0.93951 0.85080 1.20727 1.00661 1.05640 0.92085 1.19376 0.94737 0.95190 0.94939 1.20772 0.99105 1.02342 0.94527 1.20846 0.97825 1.03808 0.98007 1.17442 0.85624 0.92274 0.94286 1.91495 1.52909 1.70344 1.97005 1.21248 0.98522 1.00759 0.98077 0.93127 0.91724 0.91990 0.89360 0.92343 0.94713 0.93681 0.92740 0.75871 0.85383 0.90863 0.91285 0.91350 0.85134 0.82975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.15 0.38 -1.76 16 2 C 0.11 1.59 5.84 -4.05 -0.02 1.57 16 3 N -0.60 -12.50 2.46 -180.80 -0.44 -12.95 16 4 C 0.26 6.68 5.16 -5.19 -0.03 6.66 16 5 C -0.53 -14.82 9.39 -34.44 -0.32 -15.14 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 9 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.70 14.64 8.02 -86.93 -0.70 13.95 16 14 O -0.56 -14.41 13.61 5.28 0.07 -14.34 16 15 N -0.69 -11.05 5.17 -14.23 -0.07 -11.13 16 16 C 0.22 3.38 6.28 -83.70 -0.53 2.86 16 17 C -0.17 -2.06 9.61 -39.38 -0.38 -2.44 16 18 C -0.04 -0.46 5.88 -104.66 -0.61 -1.08 16 19 C -0.11 -0.82 10.01 36.01 0.36 -0.46 16 20 C -0.18 -2.32 9.68 -39.48 -0.38 -2.70 16 21 C 0.12 1.94 7.30 -39.45 -0.29 1.65 16 22 F -0.14 -2.28 17.27 2.25 0.04 -2.24 16 23 C -0.16 -2.90 8.63 -39.33 -0.34 -3.24 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 28 H 0.06 0.72 6.46 -51.93 -0.34 0.39 16 29 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 30 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.40 4.98 6.64 -40.82 -0.27 4.71 16 33 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 36 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 37 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.15 3.17 6.41 -52.49 -0.34 2.83 16 LS Contribution 328.17 15.07 4.95 4.95 Total: -1.00 -33.11 328.17 -7.79 -40.90 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -5.09 Total: 2.12 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -2.96 Total: 1.51 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.22 Total: -49.77 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.07 Total: -14.34 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.11 -7.79 -40.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152858412.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.434 kcal (2) G-P(sol) polarization free energy of solvation -33.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds