Wall clock time and date at job start Tue Mar 31 2020 03:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46904 * 111.00026 * 2 1 4 4 C 1.46896 * 111.00035 * 123.95553 * 2 1 3 5 5 H 1.09001 * 109.47085 * 179.48305 * 4 2 1 6 6 C 1.52995 * 109.47437 * 59.48114 * 4 2 1 7 7 N 1.46495 * 109.47189 * 55.00049 * 6 4 2 8 8 C 1.34774 * 120.00066 * 179.72895 * 7 6 4 9 9 O 1.21689 * 120.00230 * 0.26959 * 8 7 6 10 10 C 1.46378 * 119.99951 * 180.27450 * 8 7 6 11 11 H 1.07992 * 120.00229 * 359.97438 * 10 8 7 12 12 C 1.40053 * 119.99917 * 179.97438 * 10 8 7 13 13 N 1.30677 * 119.99925 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 120.00020 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47342 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47289 * 119.99845 * 14 12 10 17 17 H 1.48506 * 109.47270 * 240.00051 * 14 12 10 18 18 C 1.50705 * 109.46939 * 299.47857 * 4 2 1 19 19 C 1.38264 * 119.98811 * 249.33361 * 18 4 2 20 20 C 1.38226 * 120.05264 * 180.02562 * 19 18 4 21 21 C 1.38225 * 120.02159 * 359.97438 * 20 19 18 22 22 C 1.38431 * 119.97555 * 0.02562 * 21 20 19 23 23 F 1.35103 * 120.02766 * 180.02562 * 22 21 20 24 24 C 1.38173 * 119.98696 * 69.05772 * 18 4 2 25 25 H 1.08998 * 109.47447 * 304.47114 * 1 2 3 26 26 H 1.08998 * 109.47130 * 64.46973 * 1 2 3 27 27 H 1.08997 * 109.47248 * 184.46744 * 1 2 3 28 28 H 1.08991 * 109.47018 * 183.95610 * 3 2 1 29 29 H 1.08999 * 109.46875 * 303.95316 * 3 2 1 30 30 H 1.08997 * 109.47099 * 63.94862 * 3 2 1 31 31 H 1.09002 * 109.47069 * 295.00301 * 6 4 2 32 32 H 1.09003 * 109.47419 * 175.00318 * 6 4 2 33 33 H 0.97004 * 120.00242 * 359.97438 * 7 6 4 34 34 H 0.96999 * 119.99907 * 179.97438 * 13 12 10 35 35 H 1.08003 * 119.97526 * 359.97284 * 19 18 4 36 36 H 1.07995 * 119.98768 * 180.02562 * 20 19 18 37 37 H 1.08001 * 120.01013 * 180.02562 * 21 20 19 38 38 H 1.08005 * 120.01257 * 359.97438 * 24 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 1 3.0850 -0.7574 1.1082 6 6 1.4944 -2.2093 1.0562 7 7 1.8515 -2.7775 -0.2460 8 6 1.5145 -4.0485 -0.5419 9 8 0.9093 -4.7225 0.2707 10 6 1.8767 -4.6182 -1.8407 11 1 2.4134 -4.0200 -2.5620 12 6 1.5270 -5.9391 -2.1480 13 7 0.8770 -6.6628 -1.2754 14 14 1.9897 -6.6664 -3.8051 15 1 2.7157 -5.6489 -4.6070 16 1 2.8623 -7.8503 -3.5999 17 1 0.7585 -7.0779 -4.5263 18 6 1.5227 -0.1419 2.4252 19 6 2.4240 0.5013 3.2532 20 6 1.9920 1.0737 4.4349 21 6 0.6579 1.0042 4.7897 22 6 -0.2455 0.3605 3.9615 23 9 -1.5498 0.2923 4.3071 24 6 0.1876 -0.2077 2.7752 25 1 -0.3634 0.5816 0.8472 26 1 -0.3633 0.4429 -0.9273 27 1 -0.3633 -1.0245 0.0800 28 1 3.0827 1.3432 -0.0709 29 1 1.5898 1.9163 -0.8524 30 1 1.7043 1.8724 0.9232 31 1 0.4109 -2.2250 1.1746 32 1 1.9551 -2.7991 1.8487 33 1 2.3336 -2.2402 -0.8939 34 1 0.6345 -7.5775 -1.4883 35 1 3.4667 0.5557 2.9769 36 1 2.6969 1.5762 5.0806 37 1 0.3204 1.4519 5.7128 38 1 -0.5172 -0.7059 2.1259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153496374.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:55 Heat of formation + Delta-G solvation = -44.751586 kcal Electronic energy + Delta-G solvation = -21905.508234 eV Core-core repulsion = 18469.751623 eV Total energy + Delta-G solvation = -3435.756611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.95531 -40.16809 -37.56815 -36.55505 -33.12009 -32.22299 -31.42438 -30.82181 -28.30558 -27.57236 -26.09649 -23.87966 -22.86994 -22.55082 -20.22648 -19.42296 -17.57474 -16.95766 -16.55664 -16.38265 -15.74042 -15.49880 -15.27315 -14.98627 -14.68757 -14.21687 -13.97775 -13.63266 -13.37660 -13.22032 -12.64581 -12.34802 -12.18225 -12.14141 -11.97706 -11.73238 -11.56626 -11.18091 -11.15533 -11.01492 -10.90363 -10.60662 -10.36773 -10.13418 -9.08883 -8.83607 -8.79500 -8.27068 -7.53465 -7.36341 -6.11853 -4.55760 0.99919 1.06322 3.17249 3.25409 3.30121 3.40496 4.01183 4.14100 4.16886 4.47561 4.59265 4.66675 4.85666 4.99078 5.11944 5.20841 5.24383 5.35252 5.45157 5.46471 5.65760 5.69799 5.75664 5.86358 5.88024 5.90597 5.98911 6.09485 6.13852 6.29941 6.43118 6.49194 6.75207 7.06523 7.11123 7.50779 8.07009 8.21724 8.43450 9.10137 9.67396 10.67898 10.87535 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026034 B = 0.004069 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.243376 B = 6879.040555 C = 7291.848545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.520 5.520 3 C 0.022 3.978 4 C 0.110 3.890 5 H 0.097 0.903 6 C 0.144 3.856 7 N -0.756 5.756 8 C 0.554 3.446 9 O -0.585 6.585 10 C -0.543 4.543 11 H 0.068 0.932 12 C 0.087 3.913 13 N -0.770 5.770 14 Si 0.906 3.094 15 H -0.264 1.264 16 H -0.277 1.277 17 H -0.277 1.277 18 C -0.078 4.078 19 C -0.118 4.118 20 C -0.094 4.094 21 C -0.157 4.157 22 C 0.096 3.904 23 F -0.141 7.141 24 C -0.143 4.143 25 H 0.032 0.968 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.026 0.974 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.388 0.612 34 H 0.266 0.734 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.498 17.737 7.329 19.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.241 5.241 3 C -0.126 4.126 4 C 0.001 3.999 5 H 0.115 0.885 6 C 0.018 3.982 7 N -0.412 5.412 8 C 0.358 3.642 9 O -0.469 6.469 10 C -0.580 4.580 11 H 0.086 0.914 12 C -0.132 4.132 13 N -0.399 5.399 14 Si 0.731 3.269 15 H -0.188 1.188 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.081 4.081 19 C -0.137 4.137 20 C -0.112 4.112 21 C -0.176 4.176 22 C 0.077 3.923 23 F -0.119 7.119 24 C -0.162 4.162 25 H 0.050 0.950 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.221 0.779 34 H 0.077 0.923 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.066 16.822 7.524 18.543 hybrid contribution -0.122 0.341 -0.199 0.414 sum 1.945 17.163 7.325 18.762 Atomic orbital electron populations 1.22770 0.87448 1.03046 1.00700 1.62304 1.08503 1.13404 1.39930 1.22402 1.00679 0.89149 1.00402 1.21156 1.00326 0.94097 0.84335 0.88478 1.20912 0.98997 0.88966 0.89310 1.45947 1.64426 1.15312 1.15501 1.18226 0.78988 0.78708 0.88270 1.90596 1.44953 1.60016 1.51310 1.20919 1.39173 0.97826 1.00074 0.91391 1.25705 0.93150 0.96850 0.97476 1.70043 1.28708 1.07782 1.33382 0.86350 0.78716 0.79267 0.82597 1.18773 1.20267 1.20267 1.20471 0.92823 0.97448 0.97372 1.21160 0.99811 0.98311 0.94451 1.20972 0.94757 0.98848 0.96634 1.21127 0.93709 1.02218 1.00595 1.17720 0.78404 1.00956 0.95234 1.91503 1.33633 1.94680 1.92101 1.21370 0.97232 1.01503 0.96062 0.94979 0.91408 0.90049 0.91393 0.91463 0.95584 0.93254 0.92867 0.77941 0.92310 0.85307 0.85101 0.84998 0.83958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 7.88 60.06 0.47 0.58 16 2 N -0.52 -7.00 4.46 -244.59 -1.09 -8.09 16 3 C 0.02 0.23 9.35 60.07 0.56 0.80 16 4 C 0.11 1.53 2.29 -68.87 -0.16 1.38 16 5 H 0.10 1.27 7.90 -51.93 -0.41 0.86 16 6 C 0.14 2.73 4.46 -4.05 -0.02 2.72 16 7 N -0.76 -16.89 5.38 -61.72 -0.33 -17.22 16 8 C 0.55 15.88 7.75 -12.99 -0.10 15.78 16 9 O -0.59 -19.16 15.02 5.20 0.08 -19.08 16 10 C -0.54 -15.49 9.54 -35.63 -0.34 -15.83 16 11 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 12 C 0.09 2.47 5.50 -17.36 -0.10 2.37 16 13 N -0.77 -23.40 11.83 55.55 0.66 -22.74 16 14 Si 0.91 20.38 29.56 -169.99 -5.02 15.35 16 15 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 C -0.08 -0.99 3.58 -104.63 -0.37 -1.37 16 19 C -0.12 -1.24 9.48 -39.58 -0.38 -1.62 16 20 C -0.09 -0.88 10.04 -39.59 -0.40 -1.28 16 21 C -0.16 -1.66 10.03 -39.52 -0.40 -2.05 16 22 C 0.10 1.23 7.30 -39.42 -0.29 0.94 16 23 F -0.14 -1.93 17.27 2.25 0.04 -1.89 16 24 C -0.14 -1.92 6.94 -39.52 -0.27 -2.20 16 25 H 0.03 0.41 5.50 -51.93 -0.29 0.12 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.08 1.31 5.67 -51.93 -0.29 1.01 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.03 0.27 7.05 -51.93 -0.37 -0.09 16 31 H 0.05 1.00 5.22 -51.93 -0.27 0.73 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.39 7.90 8.12 -40.82 -0.33 7.57 16 34 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 35 H 0.13 1.10 7.97 -52.48 -0.42 0.68 16 36 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.14 2.03 5.06 -52.48 -0.27 1.77 16 LS Contribution 316.28 15.07 4.77 4.77 Total: -1.00 -34.29 316.28 -7.42 -41.71 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -4.72 Total: 6.97 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.78 Total: 0.22 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.77 Total: -48.05 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: 0.08 Total: -19.08 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.29 -7.42 -41.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153496374.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.045 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds