Wall clock time and date at job start Tue Mar 31 2020 01:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47041 * 2 1 4 4 H 1.09000 * 109.47406 * 303.56864 * 3 2 1 5 5 C 1.50698 * 109.47203 * 183.56833 * 3 2 1 6 6 H 1.07995 * 120.00398 * 245.81508 * 5 3 2 7 7 C 1.37882 * 119.99614 * 65.81036 * 5 3 2 8 8 N 1.31516 * 119.99742 * 199.62995 * 7 5 3 9 9 Si 1.86797 * 120.00174 * 19.63322 * 7 5 3 10 10 H 1.48504 * 109.47191 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47053 * 299.99973 * 9 7 5 12 12 H 1.48503 * 109.47172 * 59.99753 * 9 7 5 13 13 N 1.46501 * 109.47399 * 63.56720 * 3 2 1 14 14 C 1.34773 * 120.00543 * 275.00429 * 13 3 2 15 15 O 1.21592 * 119.99361 * 359.97438 * 14 13 3 16 16 N 1.34776 * 120.00441 * 179.97438 * 14 13 3 17 17 C 1.39933 * 119.99925 * 184.79588 * 16 14 13 18 18 C 1.38904 * 120.05954 * 321.76767 * 17 16 14 19 19 C 1.38103 * 119.97853 * 179.74315 * 18 17 16 20 20 C 1.38266 * 120.09539 * 0.51311 * 19 18 17 21 21 C 1.50700 * 119.94059 * 179.74004 * 20 19 18 22 22 C 1.38482 * 120.11506 * 359.76576 * 20 19 18 23 23 F 1.35099 * 119.99340 * 179.97438 * 22 20 19 24 24 C 1.38356 * 120.01951 * 359.97438 * 22 20 19 25 25 H 1.08997 * 109.47274 * 60.00185 * 1 2 3 26 26 H 1.08998 * 109.47455 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47518 * 300.00323 * 1 2 3 28 28 H 1.08995 * 109.47046 * 239.99809 * 2 1 3 29 29 H 1.08997 * 109.46594 * 120.00133 * 2 1 3 30 30 H 0.97003 * 120.00233 * 354.96000 * 8 7 5 31 31 H 0.97003 * 119.99481 * 95.00105 * 13 3 2 32 32 H 0.96997 * 119.99475 * 4.80050 * 16 14 13 33 33 H 1.07996 * 120.00893 * 359.97438 * 18 17 16 34 34 H 1.08002 * 119.94802 * 180.23933 * 19 18 17 35 35 H 1.08994 * 109.47701 * 270.02509 * 21 20 19 36 36 H 1.09008 * 109.47083 * 30.02737 * 21 20 19 37 37 H 1.08999 * 109.47027 * 150.01957 * 21 20 19 38 38 H 1.08002 * 120.04751 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6254 1.9744 -0.8563 5 6 3.5443 1.4434 -0.0884 6 1 4.1337 1.8091 0.7393 7 6 4.1683 0.9772 -1.2262 8 7 5.4312 0.6129 -1.1812 9 14 3.2199 0.8633 -2.8315 10 1 4.1108 0.3364 -3.8964 11 1 2.0613 -0.0493 -2.6582 12 1 2.7339 2.2128 -3.2162 13 7 1.6231 2.1078 1.2368 14 6 0.4035 2.6755 1.3186 15 8 -0.3507 2.6358 0.3657 16 7 0.0198 3.2872 2.4566 17 6 -1.2812 3.7883 2.5773 18 6 -1.8984 4.3910 1.4886 19 6 -3.1843 4.8802 1.6080 20 6 -3.8550 4.7805 2.8130 21 6 -5.2560 5.3207 2.9411 22 6 -3.2413 4.1855 3.9026 23 9 -3.8986 4.0898 5.0790 24 6 -1.9551 3.6890 3.7868 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 5.9440 0.7402 -0.3677 31 1 2.2249 2.1398 1.9969 32 1 0.6455 3.3802 3.1919 33 1 -1.3741 4.4738 0.5481 34 1 -3.6651 5.3453 0.7601 35 1 -5.2160 6.3630 3.2572 36 1 -5.7612 5.2524 1.9776 37 1 -5.8041 4.7373 3.6808 38 1 -1.4762 3.2245 4.6361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155494005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:35 Heat of formation + Delta-G solvation = -58.038627 kcal Electronic energy + Delta-G solvation = -21683.257101 eV Core-core repulsion = 18246.924321 eV Total energy + Delta-G solvation = -3436.332780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.97418 -40.41305 -38.65372 -35.80628 -34.55028 -32.63645 -31.93148 -30.86921 -30.52993 -27.43301 -26.11290 -23.05695 -22.57923 -22.04237 -20.73239 -19.76204 -18.63226 -18.06094 -17.18570 -16.35610 -15.82771 -15.69041 -15.61186 -15.07082 -14.73331 -14.05011 -13.69009 -13.53256 -13.40352 -13.33806 -12.85740 -12.65357 -12.51752 -12.38114 -11.99121 -11.79818 -11.70816 -11.33247 -10.91671 -10.74227 -10.46872 -10.10679 -9.89786 -9.68742 -9.54995 -9.14590 -8.86361 -8.33212 -8.27755 -7.93774 -6.64109 -4.26324 1.11574 1.17324 2.92519 3.36428 3.39160 3.42384 3.57792 3.76561 4.23492 4.38205 4.64310 4.70276 4.73816 5.04368 5.10763 5.18499 5.40782 5.44730 5.50847 5.76043 5.91627 6.06012 6.06605 6.08812 6.22396 6.27507 6.37013 6.53996 6.62250 6.77932 6.90260 6.97769 7.02709 7.11198 7.36364 7.43388 7.71608 8.19420 8.53207 8.68602 9.02956 9.42232 10.76892 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.035043 B = 0.003817 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.816749 B = 7333.130453 C = 7566.599765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.137 4.137 3 C 0.265 3.735 4 H 0.042 0.958 5 C -0.622 4.622 6 H 0.061 0.939 7 C 0.041 3.959 8 N -0.894 5.894 9 Si 1.040 2.960 10 H -0.283 1.283 11 H -0.270 1.270 12 H -0.280 1.280 13 N -0.711 5.711 14 C 0.694 3.306 15 O -0.577 6.577 16 N -0.697 5.697 17 C 0.203 3.797 18 C -0.122 4.122 19 C -0.075 4.075 20 C -0.145 4.145 21 C -0.109 4.109 22 C 0.111 3.889 23 F -0.140 7.140 24 C -0.186 4.186 25 H 0.052 0.948 26 H 0.029 0.971 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.269 0.731 31 H 0.391 0.609 32 H 0.405 0.595 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.753 7.605 9.136 19.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.176 4.176 3 C 0.162 3.838 4 H 0.060 0.940 5 C -0.659 4.659 6 H 0.079 0.921 7 C -0.166 4.166 8 N -0.527 5.527 9 Si 0.867 3.133 10 H -0.209 1.209 11 H -0.196 1.196 12 H -0.206 1.206 13 N -0.361 5.361 14 C 0.395 3.605 15 O -0.455 6.455 16 N -0.345 5.345 17 C 0.106 3.894 18 C -0.143 4.143 19 C -0.094 4.094 20 C -0.147 4.147 21 C -0.165 4.165 22 C 0.092 3.908 23 F -0.119 7.119 24 C -0.208 4.208 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.223 0.777 32 H 0.240 0.760 33 H 0.165 0.835 34 H 0.151 0.849 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.202 6.972 6.656 18.853 hybrid contribution 0.552 0.445 2.736 2.826 sum -15.650 7.418 9.392 19.702 Atomic orbital electron populations 1.21859 0.97301 0.98779 1.01933 1.22324 0.93820 0.99772 1.01702 1.18975 0.95149 0.88069 0.81645 0.93991 1.22051 0.89510 1.49696 1.04693 0.92057 1.25675 0.97041 0.91955 1.01912 1.70889 1.09926 1.39387 1.32462 0.84096 0.75684 0.77708 0.75822 1.20859 1.19614 1.20580 1.45571 1.13629 1.57962 1.18965 1.16088 0.83430 0.78628 0.82371 1.90896 1.53401 1.64934 1.36220 1.42804 1.11909 1.61170 1.18594 1.17166 0.84851 0.93857 0.93486 1.21428 0.95815 0.97206 0.99831 1.20810 0.94004 0.98331 0.96212 1.19853 0.98187 1.03368 0.93258 1.20657 0.92010 1.00953 1.02916 1.17100 0.90767 1.01496 0.81471 1.91461 1.80650 1.94449 1.45330 1.20769 0.94165 1.06530 0.99302 0.92861 0.95195 0.93521 0.91447 0.93118 0.92043 0.77669 0.76005 0.83515 0.84882 0.91185 0.91131 0.91527 0.84702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.49 37.16 0.32 -2.54 16 2 C -0.14 -3.02 5.32 -26.73 -0.14 -3.16 16 3 C 0.27 6.13 1.84 -69.09 -0.13 6.00 16 4 H 0.04 1.06 6.18 -51.93 -0.32 0.74 16 5 C -0.62 -16.32 8.98 -34.44 -0.31 -16.63 16 6 H 0.06 1.68 7.96 -52.49 -0.42 1.26 16 7 C 0.04 1.14 5.28 -17.82 -0.09 1.04 16 8 N -0.89 -26.11 13.70 55.43 0.76 -25.35 16 9 Si 1.04 24.59 26.37 -169.99 -4.48 20.11 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.01 5.84 56.52 0.33 -5.68 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.71 -13.66 5.01 -59.82 -0.30 -13.96 16 14 C 0.69 12.67 6.90 -86.92 -0.60 12.07 16 15 O -0.58 -12.12 11.11 5.28 0.06 -12.06 16 16 N -0.70 -9.82 5.34 -14.23 -0.08 -9.89 16 17 C 0.20 2.83 6.24 -83.70 -0.52 2.30 16 18 C -0.12 -1.73 8.68 -39.38 -0.34 -2.07 16 19 C -0.07 -0.88 9.69 -39.62 -0.38 -1.26 16 20 C -0.14 -1.65 5.89 -104.52 -0.62 -2.27 16 21 C -0.11 -0.94 9.83 36.01 0.35 -0.59 16 22 C 0.11 1.37 7.24 -39.45 -0.29 1.09 16 23 F -0.14 -1.72 16.47 2.25 0.04 -1.68 16 24 C -0.19 -2.29 9.95 -39.33 -0.39 -2.68 16 25 H 0.05 1.12 7.76 -51.93 -0.40 0.72 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.94 5.68 -51.93 -0.29 0.65 16 28 H 0.07 1.55 5.08 -51.93 -0.26 1.29 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.27 7.78 8.73 -40.82 -0.36 7.42 16 31 H 0.39 6.61 8.54 -40.82 -0.35 6.26 16 32 H 0.40 4.40 8.84 -40.82 -0.36 4.04 16 33 H 0.15 2.34 6.46 -52.49 -0.34 2.00 16 34 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.52 8.09 -51.92 -0.42 0.10 16 37 H 0.07 0.57 7.63 -51.93 -0.40 0.18 16 38 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 313.86 15.07 4.73 4.73 Total: -1.00 -30.15 313.86 -7.32 -37.47 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -4.90 Total: 9.33 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -3.14 Total: -8.70 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.38 Total: -49.20 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.06 Total: -12.06 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -4.48 Total: 20.11 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.15 -7.32 -37.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155494005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.567 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds