Wall clock time and date at job start Tue Mar 31 2020 01:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47041 * 2 1 4 4 H 1.09000 * 109.47406 * 303.56864 * 3 2 1 5 5 C 1.50698 * 109.47203 * 183.56833 * 3 2 1 6 6 H 1.07995 * 120.00398 * 245.81508 * 5 3 2 7 7 C 1.37882 * 119.99614 * 65.81036 * 5 3 2 8 8 N 1.31516 * 119.99742 * 199.62995 * 7 5 3 9 9 Si 1.86797 * 120.00174 * 19.63322 * 7 5 3 10 10 H 1.48504 * 109.47191 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47053 * 299.99973 * 9 7 5 12 12 H 1.48503 * 109.47172 * 59.99753 * 9 7 5 13 13 N 1.46501 * 109.47399 * 63.56720 * 3 2 1 14 14 C 1.34773 * 120.00543 * 275.00429 * 13 3 2 15 15 O 1.21592 * 119.99361 * 359.97438 * 14 13 3 16 16 N 1.34776 * 120.00441 * 179.97438 * 14 13 3 17 17 C 1.39933 * 119.99925 * 184.79588 * 16 14 13 18 18 C 1.38904 * 120.05954 * 321.76767 * 17 16 14 19 19 C 1.38103 * 119.97853 * 179.74315 * 18 17 16 20 20 C 1.38266 * 120.09539 * 0.51311 * 19 18 17 21 21 C 1.50700 * 119.94059 * 179.74004 * 20 19 18 22 22 C 1.38482 * 120.11506 * 359.76576 * 20 19 18 23 23 F 1.35099 * 119.99340 * 179.97438 * 22 20 19 24 24 C 1.38356 * 120.01951 * 359.97438 * 22 20 19 25 25 H 1.08997 * 109.47274 * 60.00185 * 1 2 3 26 26 H 1.08998 * 109.47455 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47518 * 300.00323 * 1 2 3 28 28 H 1.08995 * 109.47046 * 239.99809 * 2 1 3 29 29 H 1.08997 * 109.46594 * 120.00133 * 2 1 3 30 30 H 0.97003 * 120.00233 * 354.96000 * 8 7 5 31 31 H 0.97003 * 119.99481 * 95.00105 * 13 3 2 32 32 H 0.96997 * 119.99475 * 4.80050 * 16 14 13 33 33 H 1.07996 * 120.00893 * 359.97438 * 18 17 16 34 34 H 1.08002 * 119.94802 * 180.23933 * 19 18 17 35 35 H 1.08994 * 109.47701 * 270.02509 * 21 20 19 36 36 H 1.09008 * 109.47083 * 30.02737 * 21 20 19 37 37 H 1.08999 * 109.47027 * 150.01957 * 21 20 19 38 38 H 1.08002 * 120.04751 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6254 1.9744 -0.8563 5 6 3.5443 1.4434 -0.0884 6 1 4.1337 1.8091 0.7393 7 6 4.1683 0.9772 -1.2262 8 7 5.4312 0.6129 -1.1812 9 14 3.2199 0.8633 -2.8315 10 1 4.1108 0.3364 -3.8964 11 1 2.0613 -0.0493 -2.6582 12 1 2.7339 2.2128 -3.2162 13 7 1.6231 2.1078 1.2368 14 6 0.4035 2.6755 1.3186 15 8 -0.3507 2.6358 0.3657 16 7 0.0198 3.2872 2.4566 17 6 -1.2812 3.7883 2.5773 18 6 -1.8984 4.3910 1.4886 19 6 -3.1843 4.8802 1.6080 20 6 -3.8550 4.7805 2.8130 21 6 -5.2560 5.3207 2.9411 22 6 -3.2413 4.1855 3.9026 23 9 -3.8986 4.0898 5.0790 24 6 -1.9551 3.6890 3.7868 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 5.9440 0.7402 -0.3677 31 1 2.2249 2.1398 1.9969 32 1 0.6455 3.3802 3.1919 33 1 -1.3741 4.4738 0.5481 34 1 -3.6651 5.3453 0.7601 35 1 -5.2160 6.3630 3.2572 36 1 -5.7612 5.2524 1.9776 37 1 -5.8041 4.7373 3.6808 38 1 -1.4762 3.2245 4.6361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155494005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:34 Heat of formation + Delta-G solvation = -77.391200 kcal Electronic energy + Delta-G solvation = -21684.096292 eV Core-core repulsion = 18246.924321 eV Total energy + Delta-G solvation = -3437.171970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.92189 -41.71113 -39.82992 -37.36548 -35.89334 -34.51246 -33.40525 -32.11614 -31.51233 -29.18336 -27.16459 -24.37282 -24.04470 -23.33392 -22.01536 -21.42946 -20.27865 -19.29397 -18.80648 -17.41794 -17.10735 -16.89725 -16.66381 -16.35756 -16.06112 -15.58812 -15.12733 -14.71983 -14.57949 -14.43392 -14.35558 -14.23631 -14.07450 -13.61023 -13.41594 -12.95316 -12.71268 -12.68311 -12.47565 -12.28508 -12.22745 -11.77626 -11.51752 -11.26299 -11.10307 -10.95510 -10.42832 -9.90744 -9.81568 -9.05065 -8.79770 -6.43222 0.12850 0.19546 1.47564 1.51811 1.62994 1.73140 2.09762 2.42438 2.64753 3.00322 3.20017 3.41339 3.77426 3.88989 4.11262 4.27072 4.32717 4.40594 4.41331 4.55924 4.68823 4.80693 4.83686 4.97738 5.05471 5.09189 5.16139 5.20376 5.26468 5.32109 5.41789 5.48847 5.57043 5.61292 5.67437 5.97781 6.00853 6.11616 6.54157 7.10707 7.29850 7.58797 8.59430 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.035043 B = 0.003817 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.816749 B = 7333.130453 C = 7566.599765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.134 4.134 3 C 0.272 3.728 4 H 0.025 0.975 5 C -0.617 4.617 6 H 0.041 0.959 7 C -0.002 4.002 8 N -0.925 5.925 9 Si 1.070 2.930 10 H -0.283 1.283 11 H -0.247 1.247 12 H -0.272 1.272 13 N -0.713 5.713 14 C 0.697 3.303 15 O -0.604 6.604 16 N -0.680 5.680 17 C 0.181 3.819 18 C -0.139 4.139 19 C -0.073 4.073 20 C -0.139 4.139 21 C -0.109 4.109 22 C 0.101 3.899 23 F -0.139 7.139 24 C -0.178 4.178 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.258 0.742 31 H 0.401 0.599 32 H 0.420 0.580 33 H 0.125 0.875 34 H 0.157 0.843 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.218 7.994 9.813 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.173 4.173 3 C 0.167 3.833 4 H 0.043 0.957 5 C -0.655 4.655 6 H 0.059 0.941 7 C -0.204 4.204 8 N -0.560 5.560 9 Si 0.892 3.108 10 H -0.209 1.209 11 H -0.172 1.172 12 H -0.198 1.198 13 N -0.365 5.365 14 C 0.398 3.602 15 O -0.484 6.484 16 N -0.330 5.330 17 C 0.085 3.915 18 C -0.159 4.159 19 C -0.091 4.091 20 C -0.140 4.140 21 C -0.166 4.166 22 C 0.081 3.919 23 F -0.118 7.118 24 C -0.200 4.200 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.235 0.765 32 H 0.258 0.742 33 H 0.143 0.857 34 H 0.174 0.826 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -18.688 7.388 7.405 21.417 hybrid contribution 1.251 0.424 2.643 2.955 sum -17.438 7.812 10.048 21.589 Atomic orbital electron populations 1.21717 0.95577 1.00055 1.01296 1.22214 0.95230 0.98504 1.01306 1.18633 0.92851 0.89096 0.82750 0.95676 1.22241 0.91370 1.48156 1.03684 0.94108 1.26775 0.97100 0.91691 1.04797 1.70991 1.11006 1.41911 1.32092 0.83705 0.75534 0.78611 0.72906 1.20890 1.17182 1.19778 1.45257 1.14565 1.58399 1.18235 1.16070 0.82650 0.78472 0.83047 1.90879 1.54021 1.65876 1.37585 1.42479 1.12566 1.60200 1.17745 1.17275 0.84792 0.95171 0.94243 1.21397 0.96945 0.98465 0.99128 1.21032 0.93087 0.97779 0.97242 1.20196 0.99304 1.01979 0.92558 1.20752 0.90217 1.01578 1.04027 1.17268 0.90925 1.01890 0.81840 1.91466 1.80576 1.94471 1.45298 1.20874 0.94162 1.05864 0.99098 0.93902 0.92886 0.93732 0.92453 0.92905 0.93204 0.76460 0.74181 0.85745 0.82567 0.89751 0.89508 0.91381 0.82947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.97 8.49 71.98 0.61 -4.36 16 2 C -0.13 -5.72 5.32 30.59 0.16 -5.55 16 3 C 0.27 12.46 1.84 44.24 0.08 12.54 16 4 H 0.03 1.26 6.18 -2.39 -0.01 1.25 16 5 C -0.62 -32.70 8.98 25.60 0.23 -32.47 16 6 H 0.04 2.28 7.96 -2.91 -0.02 2.26 16 7 C 0.00 -0.13 5.28 84.66 0.45 0.32 16 8 N -0.93 -55.05 13.70 21.45 0.29 -54.75 16 9 Si 1.07 49.37 26.37 68.60 1.81 51.18 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 11 H -0.25 -10.44 5.84 99.48 0.58 -9.86 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 N -0.71 -27.01 5.01 -461.42 -2.31 -29.32 16 14 C 0.70 24.94 6.90 179.06 1.23 26.17 16 15 O -0.60 -25.11 11.11 -4.01 -0.04 -25.16 16 16 N -0.68 -18.41 5.34 -317.20 -1.69 -20.10 16 17 C 0.18 4.80 6.24 38.14 0.24 5.04 16 18 C -0.14 -3.81 8.68 22.40 0.19 -3.62 16 19 C -0.07 -1.57 9.69 22.24 0.22 -1.35 16 20 C -0.14 -2.81 5.89 -19.80 -0.12 -2.92 16 21 C -0.11 -1.54 9.83 71.24 0.70 -0.84 16 22 C 0.10 2.25 7.24 22.36 0.16 2.41 16 23 F -0.14 -3.08 16.47 44.97 0.74 -2.34 16 24 C -0.18 -4.04 9.95 22.43 0.22 -3.82 16 25 H 0.04 1.73 7.76 -2.39 -0.02 1.71 16 26 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 27 H 0.04 1.72 5.68 -2.39 -0.01 1.71 16 28 H 0.06 2.56 5.08 -2.39 -0.01 2.54 16 29 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.26 15.40 8.73 -92.71 -0.81 14.59 16 31 H 0.40 13.36 8.54 -92.71 -0.79 12.57 16 32 H 0.42 8.52 8.84 -92.71 -0.82 7.70 16 33 H 0.12 4.00 6.46 -2.91 -0.02 3.98 16 34 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 0.96 8.09 -2.38 -0.02 0.94 16 37 H 0.07 0.97 7.63 -2.39 -0.02 0.95 16 38 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -64.65 313.86 2.51 -62.15 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: -0.67 Total: 26.82 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 4.38 Total: -8.46 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -3.71 Total: -104.18 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.04 Total: -25.16 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.74 Total: -2.34 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 1.81 Total: 51.18 kcal Total: -64.65 2.51 -62.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155494005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.246 kcal (2) G-P(sol) polarization free energy of solvation -64.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds