Wall clock time and date at job start Tue Mar 31 2020 01:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47173 * 2 1 4 4 H 1.08996 * 109.47125 * 54.99337 * 3 2 1 5 5 C 1.50699 * 109.47305 * 175.00043 * 3 2 1 6 6 H 1.07997 * 119.99922 * 119.72066 * 5 3 2 7 7 C 1.37877 * 119.99814 * 299.99623 * 5 3 2 8 8 N 1.31520 * 119.99930 * 359.72517 * 7 5 3 9 9 Si 1.86804 * 119.99933 * 179.72250 * 7 5 3 10 10 H 1.48502 * 109.46861 * 60.00315 * 9 7 5 11 11 H 1.48499 * 109.46907 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47239 * 299.99809 * 9 7 5 13 13 N 1.46500 * 109.46629 * 294.99700 * 3 2 1 14 14 C 1.34774 * 120.00147 * 85.00379 * 13 3 2 15 15 O 1.21590 * 119.99863 * 359.97438 * 14 13 3 16 16 N 1.34773 * 120.00434 * 179.97438 * 14 13 3 17 17 C 1.40077 * 120.00557 * 175.54595 * 16 14 13 18 18 C 1.38798 * 120.07659 * 34.63245 * 17 16 14 19 19 C 1.38153 * 119.95669 * 179.72272 * 18 17 16 20 20 C 1.38274 * 120.10500 * 0.56158 * 19 18 17 21 21 C 1.50705 * 119.92164 * 179.74284 * 20 19 18 22 22 C 1.38266 * 120.15870 * 359.71770 * 20 19 18 23 23 C 1.38305 * 120.04277 * 0.02562 * 22 20 19 24 24 F 1.35103 * 120.05455 * 179.97438 * 23 22 20 25 25 H 1.08999 * 109.47077 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47492 * 300.00489 * 1 2 3 27 27 H 1.09002 * 109.47130 * 60.00353 * 1 2 3 28 28 H 1.08998 * 109.47077 * 239.99300 * 2 1 3 29 29 H 1.09002 * 109.47130 * 119.99646 * 2 1 3 30 30 H 0.97002 * 119.99843 * 179.97438 * 8 7 5 31 31 H 0.97001 * 120.00160 * 264.99581 * 13 3 2 32 32 H 0.97004 * 119.99749 * 355.53892 * 16 14 13 33 33 H 1.07998 * 120.02065 * 0.02562 * 18 17 16 34 34 H 1.08000 * 119.94556 * 180.27696 * 19 18 17 35 35 H 1.09001 * 109.47085 * 269.97675 * 21 20 19 36 36 H 1.08997 * 109.47106 * 29.97416 * 21 20 19 37 37 H 1.09001 * 109.47024 * 149.97918 * 21 20 19 38 38 H 1.08007 * 119.98032 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8849 -0.6544 7 6 4.1432 0.8785 1.2280 8 7 3.4059 0.3420 2.1757 9 14 6.0052 0.8739 1.3778 10 1 6.5056 2.2721 1.3739 11 1 6.3980 0.2117 2.6477 12 1 6.5922 0.1347 0.2315 13 7 1.6524 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3671 15 8 -0.3415 2.6318 -0.4322 16 7 0.0788 3.2672 -2.5186 17 6 -1.2181 3.7741 -2.6717 18 6 -1.8834 4.3226 -1.5840 19 6 -3.1602 4.8270 -1.7391 20 6 -3.7809 4.7759 -2.9736 21 6 -5.1760 5.3222 -3.1368 22 6 -3.1245 4.2254 -4.0589 23 6 -1.8442 3.7233 -3.9120 24 9 -1.2029 3.1848 -4.9722 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8290 -0.0564 2.9524 31 1 2.2719 2.1230 -1.9978 32 1 0.7204 3.3502 -3.2414 33 1 -1.4015 4.3594 -0.6182 34 1 -3.6760 5.2578 -0.8936 35 1 -5.9007 4.5315 -2.9430 36 1 -5.3314 6.1383 -2.4312 37 1 -5.3047 5.6918 -4.1541 38 1 -3.6119 4.1873 -5.0220 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155509511.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:38 Heat of formation + Delta-G solvation = -75.696888 kcal Electronic energy + Delta-G solvation = -21774.132404 eV Core-core repulsion = 18337.033905 eV Total energy + Delta-G solvation = -3437.098500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.91518 -41.60913 -39.82375 -37.32192 -35.87118 -34.39295 -33.07635 -31.92296 -31.51266 -29.01366 -27.19869 -25.01999 -24.11932 -23.03363 -21.98462 -21.39015 -19.88841 -19.02013 -17.95068 -17.78791 -17.31118 -16.94291 -16.66487 -16.36980 -16.04365 -15.34029 -15.02469 -14.84787 -14.57781 -14.40399 -14.28048 -14.12371 -13.55856 -13.18729 -13.06787 -12.90671 -12.80599 -12.66333 -12.63229 -12.38912 -12.15281 -12.07722 -11.62691 -11.27197 -11.08285 -10.90486 -10.53749 -9.81210 -9.73396 -8.95563 -8.16362 -6.33549 0.12461 0.26081 1.45205 1.47043 1.54501 1.69896 2.15042 2.42043 2.66827 3.13030 3.18404 3.39940 3.76616 3.97368 4.25022 4.32030 4.48478 4.53571 4.56019 4.72658 4.74744 4.93496 4.99477 5.05936 5.09833 5.16199 5.24796 5.33833 5.42768 5.48930 5.53207 5.58424 5.61544 5.71564 5.84170 6.01033 6.14812 6.20121 6.73487 7.17578 7.34242 7.65410 8.88943 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.032560 B = 0.003825 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.748326 B = 7319.250767 C = 7559.747148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.297 3.703 4 H 0.003 0.997 5 C -0.551 4.551 6 H 0.071 0.929 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.971 3.029 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.266 1.266 13 N -0.715 5.715 14 C 0.695 3.305 15 O -0.607 6.607 16 N -0.682 5.682 17 C 0.116 3.884 18 C -0.112 4.112 19 C -0.111 4.111 20 C -0.076 4.076 21 C -0.109 4.109 22 C -0.133 4.133 23 C 0.057 3.943 24 F -0.143 7.143 25 H 0.043 0.957 26 H 0.028 0.972 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.266 0.734 31 H 0.401 0.599 32 H 0.416 0.584 33 H 0.125 0.875 34 H 0.150 0.850 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.470 8.723 -13.061 20.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.161 4.161 3 C 0.194 3.806 4 H 0.021 0.979 5 C -0.589 4.589 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.190 1.190 13 N -0.367 5.367 14 C 0.396 3.604 15 O -0.487 6.487 16 N -0.331 5.331 17 C 0.020 3.980 18 C -0.133 4.133 19 C -0.129 4.129 20 C -0.077 4.077 21 C -0.165 4.165 22 C -0.152 4.152 23 C 0.035 3.965 24 F -0.122 7.122 25 H 0.062 0.938 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.235 0.765 32 H 0.254 0.746 33 H 0.143 0.857 34 H 0.168 0.832 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -13.027 8.508 -12.030 19.668 hybrid contribution 1.934 -0.366 -0.292 1.990 sum -11.094 8.142 -12.322 18.472 Atomic orbital electron populations 1.21635 0.97052 0.98906 1.00130 1.21811 0.93666 0.99307 1.01267 1.18298 0.93503 0.88790 0.80054 0.97871 1.21529 0.91291 1.39354 1.06704 0.91091 1.25741 1.03273 0.94306 0.94960 1.70039 1.37116 1.38243 1.09713 0.85423 0.79088 0.78423 0.77537 1.19696 1.21135 1.19048 1.45485 1.13988 1.58565 1.18641 1.16111 0.83108 0.78510 0.82680 1.90859 1.52588 1.65821 1.39411 1.42439 1.12506 1.60550 1.17566 1.17759 0.86183 0.99941 0.94111 1.21271 0.96666 0.97068 0.98247 1.21289 0.93669 0.99524 0.98449 1.20096 0.98135 0.97788 0.91722 1.20843 0.90056 1.01445 1.04145 1.21133 0.91879 1.00483 1.01725 1.17614 0.92838 1.03281 0.82803 1.91453 1.81770 1.84263 1.54705 0.93818 0.95256 0.94367 0.94282 0.90730 0.92516 0.76483 0.74644 0.85686 0.83240 0.90024 0.90069 0.89790 0.81915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.51 71.98 0.61 -4.93 16 2 C -0.12 -6.04 5.45 30.59 0.17 -5.87 16 3 C 0.30 15.22 2.24 44.25 0.10 15.32 16 4 H 0.00 0.21 7.58 -2.39 -0.02 0.19 16 5 C -0.55 -28.98 8.73 25.60 0.22 -28.76 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.94 5.29 84.65 0.45 1.39 16 8 N -0.91 -51.83 11.31 21.45 0.24 -51.59 16 9 Si 0.97 41.84 29.54 68.60 2.03 43.86 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 13 N -0.71 -29.93 5.03 -461.42 -2.32 -32.25 16 14 C 0.70 28.50 6.98 179.06 1.25 29.75 16 15 O -0.61 -28.89 10.89 -4.00 -0.04 -28.93 16 16 N -0.68 -22.19 5.23 -317.00 -1.66 -23.85 16 17 C 0.12 3.62 6.32 38.15 0.24 3.86 16 18 C -0.11 -3.48 8.70 22.38 0.19 -3.28 16 19 C -0.11 -2.57 9.69 22.26 0.22 -2.36 16 20 C -0.08 -1.45 5.88 -19.85 -0.12 -1.56 16 21 C -0.11 -1.20 10.01 71.24 0.71 -0.48 16 22 C -0.13 -2.72 9.67 22.29 0.22 -2.51 16 23 C 0.06 1.50 7.31 22.48 0.16 1.66 16 24 F -0.14 -3.79 16.96 44.97 0.76 -3.03 16 25 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.03 1.44 7.84 -2.39 -0.02 1.42 16 27 H 0.04 1.74 5.64 -2.39 -0.01 1.73 16 28 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 4.12 5.96 -2.39 -0.01 4.10 16 30 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 31 H 0.40 14.28 8.56 -92.71 -0.79 13.48 16 32 H 0.42 11.08 8.69 -92.71 -0.81 10.27 16 33 H 0.13 4.62 6.19 -2.91 -0.02 4.60 16 34 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 0.73 8.08 -2.39 -0.02 0.72 16 37 H 0.08 0.67 8.08 -2.39 -0.02 0.65 16 38 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -65.40 318.26 2.94 -62.46 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: -0.50 Total: 31.10 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 4.43 Total: 2.23 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -3.74 Total: -107.69 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -0.04 Total: -28.93 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.76 Total: -3.03 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -65.40 2.94 -62.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155509511.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.239 kcal (2) G-P(sol) polarization free energy of solvation -65.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds