Wall clock time and date at job start Tue Mar 31 2020 01:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47272 * 2 1 4 4 H 1.08996 * 109.46784 * 305.40173 * 3 2 1 5 5 C 1.50698 * 109.47411 * 185.39845 * 3 2 1 6 6 H 1.08004 * 119.99836 * 275.00998 * 5 3 2 7 7 C 1.37873 * 119.99969 * 95.00579 * 5 3 2 8 8 N 1.31516 * 120.00073 * 184.76547 * 7 5 3 9 9 Si 1.86797 * 120.00107 * 4.77011 * 7 5 3 10 10 H 1.48500 * 109.47230 * 84.97911 * 9 7 5 11 11 H 1.48503 * 109.47370 * 204.97798 * 9 7 5 12 12 H 1.48504 * 109.47188 * 324.97788 * 9 7 5 13 13 N 1.46501 * 109.46939 * 65.39720 * 3 2 1 14 14 C 1.34781 * 119.99895 * 275.00308 * 13 3 2 15 15 O 1.21584 * 120.00169 * 359.97438 * 14 13 3 16 16 N 1.34772 * 119.99679 * 180.02562 * 14 13 3 17 17 C 1.40078 * 120.00130 * 184.77561 * 16 14 13 18 18 C 1.38808 * 120.07580 * 332.65048 * 17 16 14 19 19 C 1.38148 * 119.95443 * 179.72067 * 18 17 16 20 20 C 1.50701 * 119.94104 * 180.27261 * 19 18 17 21 21 C 1.38276 * 120.10985 * 0.55337 * 19 18 17 22 22 C 1.38264 * 120.15627 * 359.72061 * 21 19 18 23 23 C 1.38309 * 120.04313 * 359.97438 * 22 21 19 24 24 F 1.35105 * 120.05371 * 179.97438 * 23 22 21 25 25 H 1.08993 * 109.47572 * 60.00354 * 1 2 3 26 26 H 1.09001 * 109.47212 * 299.99310 * 1 2 3 27 27 H 1.09011 * 109.46901 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47388 * 120.00451 * 2 1 3 29 29 H 1.08998 * 109.47030 * 239.99939 * 2 1 3 30 30 H 0.97002 * 120.00408 * 179.97438 * 8 7 5 31 31 H 0.97001 * 120.00229 * 95.00376 * 13 3 2 32 32 H 0.97003 * 120.00561 * 4.76798 * 16 14 13 33 33 H 1.07999 * 120.01628 * 359.97438 * 18 17 16 34 34 H 1.08999 * 109.46832 * 270.27388 * 20 19 18 35 35 H 1.08993 * 109.47539 * 30.27478 * 20 19 18 36 36 H 1.09003 * 109.46968 * 150.27660 * 20 19 18 37 37 H 1.07998 * 119.91833 * 179.70448 * 21 19 18 38 38 H 1.08005 * 119.98090 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9834 -0.8376 5 6 3.5410 1.4446 -0.1337 6 1 4.1614 1.3345 0.7435 7 6 4.1223 1.5871 -1.3757 8 7 5.4279 1.4952 -1.5052 9 14 3.0556 1.9106 -2.8746 10 1 2.7907 3.3673 -2.9886 11 1 3.7592 1.4387 -4.0942 12 1 1.7688 1.1831 -2.7328 13 7 1.6606 2.0946 1.2558 14 6 0.4440 2.6612 1.3803 15 8 -0.3384 2.6315 0.4501 16 7 0.0953 3.2615 2.5354 17 6 -1.2026 3.7620 2.7006 18 6 -1.9373 4.1684 1.5954 19 6 -3.2192 4.6563 1.7607 20 6 -4.0189 5.0917 0.5599 21 6 -3.7675 4.7510 3.0265 22 6 -3.0376 4.3528 4.1312 23 6 -1.7560 3.8575 3.9725 24 9 -1.0424 3.4688 5.0519 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 5.8368 1.5950 -2.3791 31 1 2.2850 2.1185 1.9978 32 1 0.7429 3.3469 3.2525 33 1 -1.5086 4.0995 0.6065 34 1 -3.8333 6.1477 0.3632 35 1 -3.7216 4.5029 -0.3077 36 1 -5.0804 4.9398 0.7557 37 1 -4.7681 5.1373 3.1526 38 1 -3.4685 4.4284 5.1187 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155537671.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:49 Heat of formation + Delta-G solvation = -75.407407 kcal Electronic energy + Delta-G solvation = -22000.022495 eV Core-core repulsion = 18562.936548 eV Total energy + Delta-G solvation = -3437.085947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.88195 -41.71176 -39.82116 -37.34971 -35.86093 -34.44643 -33.30266 -32.93245 -30.66013 -29.21260 -27.52547 -24.98906 -24.26011 -22.75824 -22.00868 -21.47155 -20.05270 -18.93490 -18.30075 -18.10349 -17.27120 -16.87028 -16.72146 -16.36559 -16.01487 -15.28525 -15.13974 -14.88061 -14.78176 -14.55157 -14.30043 -14.23409 -13.78182 -13.71658 -13.02871 -12.92515 -12.82358 -12.69591 -12.57885 -12.49809 -12.27175 -11.87973 -11.74303 -11.39984 -11.23063 -10.89052 -10.82865 -9.84628 -9.59978 -8.99396 -8.40036 -6.46667 0.13922 0.30118 1.29323 1.34358 1.45149 1.62338 2.09482 2.26751 2.68840 2.94411 3.23018 3.33572 3.81288 3.94643 4.26778 4.30040 4.34352 4.40687 4.48948 4.52583 4.77315 4.84857 4.87102 4.94583 5.06814 5.15400 5.19725 5.23405 5.25679 5.32713 5.39849 5.42640 5.55253 5.64061 5.76246 5.88123 6.03442 6.24512 6.59288 7.07526 7.20662 7.55185 8.74892 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.023137 B = 0.004758 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.875435 B = 5883.541048 C = 6411.382518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.124 4.124 3 C 0.260 3.740 4 H 0.035 0.965 5 C -0.528 4.528 6 H 0.055 0.945 7 C 0.036 3.964 8 N -0.929 5.929 9 Si 0.926 3.074 10 H -0.275 1.275 11 H -0.278 1.278 12 H -0.252 1.252 13 N -0.713 5.713 14 C 0.697 3.303 15 O -0.602 6.602 16 N -0.680 5.680 17 C 0.129 3.871 18 C -0.134 4.134 19 C -0.078 4.078 20 C -0.112 4.112 21 C -0.111 4.111 22 C -0.122 4.122 23 C 0.037 3.963 24 F -0.145 7.145 25 H 0.037 0.963 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.271 0.729 31 H 0.401 0.599 32 H 0.417 0.583 33 H 0.137 0.863 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.167 0.833 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.967 6.617 9.721 22.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.163 4.163 3 C 0.157 3.843 4 H 0.052 0.948 5 C -0.567 4.567 6 H 0.073 0.927 7 C -0.165 4.165 8 N -0.567 5.567 9 Si 0.751 3.249 10 H -0.200 1.200 11 H -0.203 1.203 12 H -0.176 1.176 13 N -0.365 5.365 14 C 0.397 3.603 15 O -0.482 6.482 16 N -0.327 5.327 17 C 0.032 3.968 18 C -0.155 4.155 19 C -0.079 4.079 20 C -0.168 4.168 21 C -0.130 4.130 22 C -0.141 4.141 23 C 0.015 3.985 24 F -0.124 7.124 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.236 0.764 32 H 0.254 0.746 33 H 0.155 0.845 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.185 0.815 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -19.364 6.497 8.744 22.217 hybrid contribution 1.279 -0.040 0.060 1.281 sum -18.085 6.456 8.803 21.124 Atomic orbital electron populations 1.21730 0.95834 1.00098 1.01078 1.22007 0.94964 0.98042 1.01295 1.18830 0.93045 0.89939 0.82534 0.94760 1.21190 0.90188 1.50650 0.94622 0.92681 1.25589 0.95730 0.93767 1.01440 1.69977 1.11122 1.50115 1.25527 0.86058 0.80036 0.79292 0.79537 1.20039 1.20350 1.17588 1.45636 1.13885 1.58551 1.18470 1.16112 0.83051 0.78457 0.82638 1.90794 1.51902 1.65745 1.39777 1.42488 1.12331 1.60216 1.17687 1.17827 0.85829 0.99633 0.93465 1.21474 0.95637 0.99437 0.98929 1.20233 0.93446 0.97158 0.97039 1.20832 0.99966 1.01986 0.94037 1.21224 1.01449 1.00233 0.90050 1.21276 0.91226 0.99471 1.02115 1.17591 0.92522 1.07273 0.81092 1.91447 1.78206 1.89505 1.53267 0.94404 0.93772 0.92649 0.92207 0.92734 0.91976 0.76367 0.74594 0.84540 0.89857 0.92466 0.88967 0.81511 0.81686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 8.52 71.98 0.61 -4.43 16 2 C -0.12 -5.24 5.59 30.59 0.17 -5.07 16 3 C 0.26 12.07 1.90 44.24 0.08 12.15 16 4 H 0.03 1.73 4.73 -2.39 -0.01 1.72 16 5 C -0.53 -28.24 9.05 25.60 0.23 -28.01 16 6 H 0.05 3.15 8.06 -2.91 -0.02 3.12 16 7 C 0.04 1.98 5.47 84.65 0.46 2.44 16 8 N -0.93 -54.99 13.96 21.45 0.30 -54.69 16 9 Si 0.93 44.03 26.99 68.60 1.85 45.88 16 10 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.25 -11.63 6.82 99.48 0.68 -10.95 16 13 N -0.71 -28.16 5.03 -461.42 -2.32 -30.48 16 14 C 0.70 26.55 7.03 179.05 1.26 27.81 16 15 O -0.60 -25.91 10.47 -3.98 -0.04 -25.95 16 16 N -0.68 -21.16 5.30 -316.99 -1.68 -22.84 16 17 C 0.13 3.85 6.44 38.15 0.25 4.10 16 18 C -0.13 -4.01 8.43 22.38 0.19 -3.83 16 19 C -0.08 -1.73 5.88 -19.88 -0.12 -1.85 16 20 C -0.11 -1.89 10.01 71.24 0.71 -1.18 16 21 C -0.11 -1.89 9.69 22.28 0.22 -1.68 16 22 C -0.12 -2.28 10.02 22.29 0.22 -2.06 16 23 C 0.04 0.94 7.31 22.48 0.16 1.10 16 24 F -0.15 -3.69 16.85 44.97 0.76 -2.93 16 25 H 0.04 1.55 7.87 -2.39 -0.02 1.53 16 26 H 0.04 1.75 5.64 -2.39 -0.01 1.73 16 27 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.40 14.07 8.61 -92.71 -0.80 13.27 16 32 H 0.42 10.85 8.52 -92.71 -0.79 10.06 16 33 H 0.14 4.89 5.63 -2.91 -0.02 4.87 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.14 8.09 -2.39 -0.02 1.12 16 36 H 0.09 1.08 8.08 -2.39 -0.02 1.06 16 37 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -65.53 317.17 2.81 -62.72 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: -0.51 Total: 28.80 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 4.46 Total: -0.50 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -3.70 Total: -108.01 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.04 Total: -25.95 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.76 Total: -2.93 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.85 Total: 45.88 kcal Total: -65.53 2.81 -62.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155537671.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.687 kcal (2) G-P(sol) polarization free energy of solvation -65.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds