Wall clock time and date at job start Tue Mar 31 2020 01:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47487 * 2 1 4 4 H 1.08999 * 109.46598 * 304.95988 * 3 2 1 5 5 C 1.50691 * 109.47273 * 184.95890 * 3 2 1 6 6 H 1.08000 * 120.00255 * 245.53378 * 5 3 2 7 7 C 1.37889 * 119.99955 * 65.53420 * 5 3 2 8 8 N 1.31515 * 119.99877 * 198.61951 * 7 5 3 9 9 Si 1.86803 * 119.99898 * 18.62398 * 7 5 3 10 10 H 1.48491 * 109.47003 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.46641 * 300.00039 * 9 7 5 12 12 H 1.48499 * 109.47190 * 59.99810 * 9 7 5 13 13 N 1.46503 * 109.46883 * 64.96061 * 3 2 1 14 14 C 1.34781 * 119.99783 * 275.00044 * 13 3 2 15 15 O 1.21587 * 120.00090 * 0.02562 * 14 13 3 16 16 N 1.34774 * 119.99740 * 180.02562 * 14 13 3 17 17 C 1.40065 * 119.99872 * 184.45743 * 16 14 13 18 18 C 1.38860 * 120.03985 * 330.49422 * 17 16 14 19 19 C 1.38097 * 119.95253 * 180.02562 * 18 17 16 20 20 C 1.38498 * 120.04625 * 359.97438 * 19 18 17 21 21 F 1.35099 * 119.95696 * 180.02562 * 20 19 18 22 22 C 1.38447 * 120.08645 * 0.04799 * 20 19 18 23 23 C 1.38150 * 120.04330 * 359.67829 * 22 20 19 24 24 C 1.50706 * 120.02034 * 180.30442 * 23 22 20 25 25 H 1.09003 * 109.46574 * 299.99710 * 1 2 3 26 26 H 1.08993 * 109.46942 * 59.99753 * 1 2 3 27 27 H 1.09001 * 109.46970 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46880 * 239.99622 * 2 1 3 29 29 H 1.08997 * 109.47394 * 120.00380 * 2 1 3 30 30 H 0.96994 * 120.00166 * 354.96075 * 8 7 5 31 31 H 0.96999 * 119.99850 * 95.00546 * 13 3 2 32 32 H 0.97002 * 119.99982 * 4.44580 * 16 14 13 33 33 H 1.07997 * 120.02684 * 0.02957 * 18 17 16 34 34 H 1.08000 * 119.98088 * 180.02562 * 19 18 17 35 35 H 1.07995 * 119.97908 * 179.97438 * 22 20 19 36 36 H 1.09000 * 109.46586 * 270.27349 * 24 23 22 37 37 H 1.08999 * 109.46969 * 30.27188 * 24 23 22 38 38 H 1.08994 * 109.46576 * 150.27434 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6061 1.9812 -0.8422 5 6 3.5420 1.4442 -0.1228 6 1 4.1501 1.8074 0.6925 7 6 4.1400 0.9819 -1.2761 8 7 5.4090 0.6366 -1.2659 9 14 3.1476 0.8463 -2.8529 10 1 4.0150 0.3266 -3.9404 11 1 2.0083 -0.0825 -2.6423 12 1 2.6306 2.1866 -3.2292 13 7 1.6518 2.0977 1.2514 14 6 0.4344 2.6647 1.3656 15 8 -0.3417 2.6320 0.4302 16 7 0.0773 3.2679 2.5167 17 6 -1.2196 3.7748 2.6687 18 6 -1.9243 4.2251 1.5602 19 6 -3.2026 4.7250 1.7123 20 6 -3.7820 4.7768 2.9692 21 9 -5.0329 5.2657 3.1158 22 6 -3.0808 4.3287 4.0757 23 6 -1.8039 3.8227 3.9270 24 6 -1.0437 3.3287 5.1309 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 5.9430 0.7754 -0.4682 31 1 2.2708 2.1235 1.9978 32 1 0.7184 3.3509 3.2400 33 1 -1.4731 4.1845 0.5799 34 1 -3.7513 5.0750 0.8504 35 1 -3.5341 4.3703 5.0550 36 1 -0.4752 4.1516 5.5642 37 1 -1.7454 2.9428 5.8703 38 1 -0.3610 2.5348 4.8286 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155568708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:01 Heat of formation + Delta-G solvation = -74.427345 kcal Electronic energy + Delta-G solvation = -21863.736224 eV Core-core repulsion = 18426.692776 eV Total energy + Delta-G solvation = -3437.043448 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -49.82843 -41.82354 -39.87388 -37.27211 -35.68251 -34.47837 -33.62476 -33.04675 -30.31557 -28.95683 -27.80061 -24.62196 -24.04661 -22.79862 -22.12016 -21.45298 -20.26112 -19.20365 -18.43513 -18.10795 -17.27964 -16.84785 -16.63360 -16.46471 -15.65461 -15.24380 -15.03809 -14.81433 -14.63202 -14.46131 -14.36442 -14.15632 -14.12291 -13.71627 -13.59024 -12.84112 -12.79423 -12.67641 -12.50142 -12.30779 -12.13433 -11.77834 -11.52307 -11.28994 -11.12513 -10.88297 -10.43928 -9.89273 -9.85357 -8.92970 -8.77795 -6.42942 0.11430 0.25219 1.47507 1.51729 1.65145 1.73785 2.08868 2.42361 2.66556 3.01315 3.30545 3.32090 3.76976 3.83786 4.15776 4.29465 4.33816 4.41981 4.45538 4.56232 4.64419 4.81315 4.84404 4.92467 5.09100 5.13787 5.19834 5.25275 5.26728 5.31481 5.34683 5.46107 5.57374 5.63326 5.68310 5.99417 6.01683 6.13175 6.54699 7.11369 7.30254 7.58955 8.60508 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030442 B = 0.004134 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.571036 B = 6770.800267 C = 7179.416863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.134 4.134 3 C 0.271 3.729 4 H 0.024 0.976 5 C -0.615 4.615 6 H 0.042 0.958 7 C -0.002 4.002 8 N -0.927 5.927 9 Si 1.069 2.931 10 H -0.284 1.284 11 H -0.246 1.246 12 H -0.274 1.274 13 N -0.712 5.712 14 C 0.695 3.305 15 O -0.604 6.604 16 N -0.673 5.673 17 C 0.150 3.850 18 C -0.117 4.117 19 C -0.144 4.144 20 C 0.064 3.936 21 F -0.147 7.147 22 C -0.130 4.130 23 C -0.087 4.087 24 C -0.114 4.114 25 H 0.046 0.954 26 H 0.040 0.960 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.259 0.741 31 H 0.401 0.599 32 H 0.420 0.580 33 H 0.137 0.863 34 H 0.144 0.856 35 H 0.164 0.836 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.017 6.047 13.152 20.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.173 4.173 3 C 0.166 3.834 4 H 0.042 0.958 5 C -0.653 4.653 6 H 0.060 0.940 7 C -0.203 4.203 8 N -0.561 5.561 9 Si 0.892 3.108 10 H -0.210 1.210 11 H -0.171 1.171 12 H -0.199 1.199 13 N -0.364 5.364 14 C 0.396 3.604 15 O -0.484 6.484 16 N -0.321 5.321 17 C 0.054 3.946 18 C -0.138 4.138 19 C -0.163 4.163 20 C 0.044 3.956 21 F -0.126 7.126 22 C -0.149 4.149 23 C -0.090 4.090 24 C -0.171 4.171 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.236 0.764 32 H 0.259 0.741 33 H 0.155 0.845 34 H 0.161 0.839 35 H 0.181 0.819 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.549 5.460 10.718 19.658 hybrid contribution 0.848 0.732 2.006 2.298 sum -14.701 6.192 12.724 20.405 Atomic orbital electron populations 1.21726 0.95603 1.00054 1.01344 1.22234 0.95216 0.98470 1.01399 1.18637 0.93132 0.89248 0.82390 0.95785 1.22253 0.91407 1.48131 1.03485 0.94010 1.26739 0.97461 0.91839 1.04263 1.70984 1.09578 1.42385 1.33199 0.83725 0.75385 0.78586 0.73137 1.20963 1.17071 1.19924 1.45255 1.14223 1.58682 1.18191 1.16128 0.82774 0.78525 0.83018 1.90832 1.52384 1.65720 1.39471 1.42504 1.12646 1.59747 1.17223 1.17630 0.85190 0.97558 0.94223 1.21361 0.94835 0.97614 0.99973 1.21141 0.95905 1.02359 0.96902 1.17777 0.80867 1.02042 0.94894 1.91463 1.38626 1.85922 1.96590 1.21030 0.94184 1.00680 0.98965 1.19720 0.94345 1.00771 0.94205 1.20843 1.00421 1.01820 0.93975 0.93525 0.94071 0.92901 0.92455 0.92734 0.93178 0.76408 0.74144 0.84540 0.83865 0.81869 0.88913 0.89114 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.96 8.51 71.98 0.61 -4.34 16 2 C -0.13 -5.67 5.30 30.60 0.16 -5.51 16 3 C 0.27 12.29 1.83 44.24 0.08 12.37 16 4 H 0.02 1.20 6.22 -2.39 -0.01 1.19 16 5 C -0.61 -32.31 8.99 25.60 0.23 -32.08 16 6 H 0.04 2.31 7.96 -2.91 -0.02 2.29 16 7 C 0.00 -0.10 5.29 84.66 0.45 0.35 16 8 N -0.93 -54.87 13.70 21.45 0.29 -54.58 16 9 Si 1.07 49.30 26.33 68.60 1.81 51.11 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 11 H -0.25 -10.37 5.79 99.48 0.58 -9.79 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 N -0.71 -26.43 5.03 -461.42 -2.32 -28.75 16 14 C 0.69 24.41 7.00 179.05 1.25 25.66 16 15 O -0.60 -24.89 10.58 -3.99 -0.04 -24.93 16 16 N -0.67 -17.56 4.88 -317.13 -1.55 -19.11 16 17 C 0.15 3.89 6.38 38.11 0.24 4.14 16 18 C -0.12 -3.41 8.75 22.39 0.20 -3.22 16 19 C -0.14 -3.63 10.02 22.30 0.22 -3.40 16 20 C 0.06 1.48 7.30 22.38 0.16 1.64 16 21 F -0.15 -3.44 17.27 44.97 0.78 -2.67 16 22 C -0.13 -2.47 9.68 22.30 0.22 -2.25 16 23 C -0.09 -1.72 5.90 -19.75 -0.12 -1.83 16 24 C -0.11 -1.44 9.45 71.24 0.67 -0.76 16 25 H 0.05 1.78 5.65 -2.39 -0.01 1.76 16 26 H 0.04 1.65 7.84 -2.39 -0.02 1.63 16 27 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.06 2.54 4.96 -2.38 -0.01 2.52 16 29 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.26 15.32 8.73 -92.71 -0.81 14.51 16 31 H 0.40 12.98 8.54 -92.71 -0.79 12.19 16 32 H 0.42 8.08 7.63 -92.71 -0.71 7.37 16 33 H 0.14 4.70 5.79 -2.91 -0.02 4.68 16 34 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 35 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.09 0.86 8.09 -2.39 -0.02 0.84 16 38 H 0.07 0.90 7.08 -2.39 -0.02 0.88 16 Total: -1.00 -64.71 311.19 2.79 -61.92 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: -0.56 Total: 26.24 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 4.39 Total: -9.23 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -3.57 Total: -102.44 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.04 Total: -24.93 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.78 Total: -2.67 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 1.81 Total: 51.11 kcal Total: -64.71 2.79 -61.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155568708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.508 kcal (2) G-P(sol) polarization free energy of solvation -64.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds