Wall clock time and date at job start Tue Mar 31 2020 01:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47244 * 2 1 4 4 H 1.09005 * 109.47037 * 305.66602 * 3 2 1 5 5 C 1.50692 * 109.47128 * 185.66384 * 3 2 1 6 6 H 1.08001 * 120.00150 * 265.44553 * 5 3 2 7 7 C 1.37879 * 120.00112 * 85.45306 * 5 3 2 8 8 N 1.31519 * 120.00186 * 185.07851 * 7 5 3 9 9 Si 1.86796 * 119.99912 * 5.07324 * 7 5 3 10 10 H 1.48505 * 109.47223 * 94.64313 * 9 7 5 11 11 H 1.48503 * 109.47206 * 214.64009 * 9 7 5 12 12 H 1.48494 * 109.47333 * 334.64035 * 9 7 5 13 13 N 1.46502 * 109.47412 * 65.66178 * 3 2 1 14 14 C 1.34771 * 119.99973 * 275.00537 * 13 3 2 15 15 O 1.21591 * 120.00199 * 359.97438 * 14 13 3 16 16 N 1.34778 * 119.99824 * 179.97438 * 14 13 3 17 17 C 1.40067 * 119.99896 * 184.82029 * 16 14 13 18 18 C 1.38866 * 120.04278 * 324.48003 * 17 16 14 19 19 C 1.38091 * 119.95311 * 180.02562 * 18 17 16 20 20 C 1.38498 * 120.04749 * 0.02562 * 19 18 17 21 21 F 1.35092 * 119.95348 * 179.70081 * 20 19 18 22 22 C 1.38443 * 120.08651 * 359.97438 * 20 19 18 23 23 C 1.50702 * 119.97993 * 179.97438 * 22 20 19 24 24 C 1.38142 * 120.04419 * 0.02562 * 22 20 19 25 25 H 1.09009 * 109.46938 * 300.00196 * 1 2 3 26 26 H 1.09004 * 109.47221 * 59.99378 * 1 2 3 27 27 H 1.08996 * 109.47612 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46700 * 240.00415 * 2 1 3 29 29 H 1.08997 * 109.46877 * 119.99814 * 2 1 3 30 30 H 0.97001 * 119.99796 * 180.02562 * 8 7 5 31 31 H 0.97000 * 119.99717 * 94.99487 * 13 3 2 32 32 H 0.96996 * 119.99994 * 4.81512 * 16 14 13 33 33 H 1.07995 * 120.02320 * 0.02562 * 18 17 16 34 34 H 1.07999 * 119.97723 * 179.97438 * 19 18 17 35 35 H 1.08999 * 109.46905 * 89.99656 * 23 22 20 36 36 H 1.08997 * 109.47472 * 210.00147 * 23 22 20 37 37 H 1.09004 * 109.46545 * 330.00346 * 23 22 20 38 38 H 1.08005 * 120.02198 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5962 1.9848 -0.8349 5 6 3.5404 1.4448 -0.1402 6 1 4.1650 1.4892 0.7398 7 6 4.1159 1.3904 -1.3920 8 7 5.4219 1.2915 -1.5116 9 14 3.0407 1.4569 -2.9180 10 1 2.9521 2.8586 -3.4004 11 1 3.6344 0.6048 -3.9794 12 1 1.6809 0.9602 -2.5874 13 7 1.6662 2.0927 1.2585 14 6 0.4502 2.6591 1.3891 15 8 -0.3364 2.6308 0.4623 16 7 0.1061 3.2568 2.5470 17 6 -1.1912 3.7562 2.7189 18 6 -1.8667 4.3208 1.6450 19 6 -3.1455 4.8130 1.8166 20 6 -3.7541 4.7443 3.0588 21 9 -5.0028 5.2318 3.2260 22 6 -3.0822 4.1817 4.1307 23 6 -3.7465 4.1087 5.4814 24 6 -1.8029 3.6882 3.9631 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.8268 1.2536 -2.3922 31 1 2.2938 2.1154 1.9977 32 1 0.7569 3.3411 3.2613 33 1 -1.3924 4.3749 0.6763 34 1 -3.6711 5.2526 0.9818 35 1 -4.2943 3.1703 5.5666 36 1 -2.9880 4.1590 6.2626 37 1 -4.4378 4.9442 5.5918 38 1 -1.2789 3.2498 4.7996 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156008479.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:09 Heat of formation + Delta-G solvation = -56.884926 kcal Electronic energy + Delta-G solvation = -21679.214155 eV Core-core repulsion = 18242.931403 eV Total energy + Delta-G solvation = -3436.282752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.85918 -40.39836 -38.63178 -35.69400 -34.33465 -32.81155 -32.33331 -31.44311 -29.17100 -27.45033 -26.88746 -23.10549 -22.71706 -22.24339 -20.44510 -19.76446 -18.54628 -17.50741 -17.16751 -16.61679 -16.13767 -15.67319 -15.37839 -14.89549 -14.29118 -14.19995 -13.61691 -13.57923 -13.39492 -13.15994 -13.05478 -12.83044 -12.60917 -12.22394 -12.01406 -11.87322 -11.84217 -11.13779 -10.96756 -10.77957 -10.73443 -10.14538 -9.87134 -9.82145 -9.53386 -9.24204 -8.91507 -8.74239 -8.21479 -7.82444 -6.26852 -4.30111 1.13338 1.20465 2.98439 3.23855 3.32709 3.40258 3.40526 3.80137 4.28053 4.29653 4.61865 4.66302 4.74239 5.06063 5.11876 5.28256 5.35996 5.39979 5.64886 5.66208 5.89390 6.04629 6.07871 6.15404 6.20890 6.28994 6.32837 6.53874 6.61451 6.76207 6.90168 6.97094 7.05130 7.12797 7.31881 7.42343 7.50975 8.20145 8.57786 8.73640 9.03951 9.34989 10.84815 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.032909 B = 0.003875 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.618155 B = 7224.841588 C = 7438.925886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.255 3.745 4 H 0.052 0.948 5 C -0.534 4.534 6 H 0.078 0.922 7 C 0.082 3.918 8 N -0.889 5.889 9 Si 0.869 3.131 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.253 1.253 13 N -0.711 5.711 14 C 0.693 3.307 15 O -0.580 6.580 16 N -0.695 5.695 17 C 0.176 3.824 18 C -0.098 4.098 19 C -0.130 4.130 20 C 0.066 3.934 21 F -0.144 7.144 22 C -0.102 4.102 23 C -0.111 4.111 24 C -0.130 4.130 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.028 0.972 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.268 0.732 31 H 0.391 0.609 32 H 0.405 0.595 33 H 0.153 0.847 34 H 0.135 0.865 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.112 5.099 11.812 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C 0.152 3.848 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.096 0.904 7 C -0.123 4.123 8 N -0.525 5.525 9 Si 0.695 3.305 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.177 1.177 13 N -0.363 5.363 14 C 0.394 3.606 15 O -0.458 6.458 16 N -0.343 5.343 17 C 0.079 3.921 18 C -0.119 4.119 19 C -0.149 4.149 20 C 0.046 3.954 21 F -0.123 7.123 22 C -0.104 4.104 23 C -0.168 4.168 24 C -0.151 4.151 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.224 0.776 32 H 0.240 0.760 33 H 0.171 0.829 34 H 0.153 0.847 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.592 4.986 10.758 18.802 hybrid contribution 0.086 0.093 -0.169 0.211 sum -14.506 5.080 10.589 18.665 Atomic orbital electron populations 1.21881 0.97319 0.98745 1.02075 1.22143 0.93777 0.99572 1.01184 1.19105 0.95374 0.88735 0.81553 0.93059 1.20996 0.88576 1.52862 0.94726 0.90374 1.24867 0.94873 0.93625 0.98889 1.69885 1.09713 1.48539 1.24362 0.86970 0.81928 0.78809 0.82813 1.20086 1.21024 1.17654 1.45751 1.13118 1.58387 1.18997 1.16136 0.83657 0.78632 0.82188 1.90881 1.51207 1.64884 1.38788 1.42832 1.11591 1.61570 1.18323 1.17538 0.85320 0.95246 0.93988 1.21296 0.94245 0.95952 1.00362 1.21044 0.95961 1.01991 0.95912 1.17472 0.81033 1.02254 0.94607 1.91440 1.38680 1.86026 1.96164 1.19598 0.94702 1.00542 0.95534 1.20695 1.00615 1.02821 0.92627 1.20603 0.94220 1.03144 0.97098 0.93203 0.93053 0.95244 0.92125 0.93000 0.92234 0.77558 0.75985 0.82948 0.84697 0.90900 0.91055 0.91272 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.53 37.16 0.32 -2.51 16 2 C -0.13 -2.71 5.17 -26.73 -0.14 -2.84 16 3 C 0.26 5.78 1.76 -69.08 -0.12 5.66 16 4 H 0.05 1.28 5.13 -51.93 -0.27 1.01 16 5 C -0.53 -13.83 9.06 -34.44 -0.31 -14.14 16 6 H 0.08 2.13 8.02 -52.49 -0.42 1.71 16 7 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 8 N -0.89 -25.66 13.96 55.43 0.77 -24.89 16 9 Si 0.87 20.85 26.37 -169.99 -4.48 16.37 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.25 -5.93 6.01 56.52 0.34 -5.59 16 13 N -0.71 -13.31 5.03 -59.81 -0.30 -13.62 16 14 C 0.69 12.44 7.01 -86.92 -0.61 11.83 16 15 O -0.58 -12.13 10.94 5.29 0.06 -12.07 16 16 N -0.70 -9.50 5.35 -14.21 -0.08 -9.58 16 17 C 0.18 2.38 6.29 -83.65 -0.53 1.86 16 18 C -0.10 -1.43 8.69 -39.40 -0.34 -1.77 16 19 C -0.13 -1.67 10.02 -39.54 -0.40 -2.07 16 20 C 0.07 0.83 7.24 -39.41 -0.29 0.55 16 21 F -0.14 -1.82 16.46 2.25 0.04 -1.78 16 22 C -0.10 -1.15 5.88 -104.58 -0.62 -1.76 16 23 C -0.11 -0.93 9.83 36.01 0.35 -0.58 16 24 C -0.13 -1.45 9.62 -39.40 -0.38 -1.83 16 25 H 0.05 0.99 5.63 -51.92 -0.29 0.70 16 26 H 0.05 1.08 7.88 -51.93 -0.41 0.67 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 1.34 6.97 -51.93 -0.36 0.97 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.39 6.35 8.58 -40.82 -0.35 6.00 16 32 H 0.40 4.17 8.84 -40.82 -0.36 3.81 16 33 H 0.15 2.51 6.25 -52.49 -0.33 2.18 16 34 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 37 H 0.07 0.57 7.63 -51.93 -0.40 0.17 16 38 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 314.78 15.07 4.74 4.74 Total: -1.00 -30.26 314.78 -7.32 -37.57 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -4.92 Total: 8.73 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -3.15 Total: -5.49 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 0.40 Total: -48.08 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.06 Total: -12.07 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.48 Total: 16.37 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.26 -7.32 -37.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156008479.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.312 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds