Wall clock time and date at job start Tue Mar 31 2020 01:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47539 * 2 1 4 4 H 1.08998 * 109.46604 * 54.30303 * 3 2 1 5 5 C 1.50693 * 109.47492 * 174.30669 * 3 2 1 6 6 H 1.08006 * 120.00312 * 91.34010 * 5 3 2 7 7 C 1.37881 * 119.99764 * 271.34544 * 5 3 2 8 8 N 1.31521 * 119.99778 * 182.89566 * 7 5 3 9 9 Si 1.86799 * 120.00169 * 2.89162 * 7 5 3 10 10 H 1.48497 * 109.47187 * 264.97261 * 9 7 5 11 11 H 1.48500 * 109.46925 * 24.97392 * 9 7 5 12 12 H 1.48504 * 109.46956 * 144.97219 * 9 7 5 13 13 N 1.46499 * 109.46783 * 294.30627 * 3 2 1 14 14 C 1.34781 * 120.00076 * 84.99894 * 13 3 2 15 15 O 1.21589 * 119.99797 * 359.97438 * 14 13 3 16 16 N 1.34774 * 120.00027 * 179.97438 * 14 13 3 17 17 C 1.39947 * 119.99854 * 184.34183 * 16 14 13 18 18 C 1.38901 * 120.05398 * 330.47797 * 17 16 14 19 19 C 1.38105 * 119.97703 * 179.77082 * 18 17 16 20 20 C 1.38266 * 120.09605 * 0.51223 * 19 18 17 21 21 C 1.38490 * 120.11154 * 359.74115 * 20 19 18 22 22 F 1.35102 * 119.98929 * 179.97438 * 21 20 19 23 23 C 1.38354 * 120.02159 * 0.02562 * 21 20 19 24 24 C 1.50701 * 120.04916 * 180.02562 * 23 21 20 25 25 H 1.09000 * 109.46968 * 299.99854 * 1 2 3 26 26 H 1.09002 * 109.46885 * 59.99990 * 1 2 3 27 27 H 1.08993 * 109.47051 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47410 * 239.99844 * 2 1 3 29 29 H 1.08997 * 109.47323 * 119.99896 * 2 1 3 30 30 H 0.96995 * 119.99834 * 180.02562 * 8 7 5 31 31 H 0.96996 * 120.00235 * 264.99502 * 13 3 2 32 32 H 0.96996 * 120.00250 * 4.33480 * 16 14 13 33 33 H 1.08000 * 120.01282 * 0.02562 * 18 17 16 34 34 H 1.07999 * 119.95272 * 180.25704 * 19 18 17 35 35 H 1.08000 * 119.94575 * 179.72060 * 20 19 18 36 36 H 1.08997 * 109.46897 * 269.97582 * 24 23 21 37 37 H 1.08995 * 109.47028 * 29.98082 * 24 23 21 38 38 H 1.09002 * 109.47117 * 149.97601 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5959 1.9849 0.8346 5 6 3.5404 1.4448 0.1409 6 1 4.1656 1.4366 -0.7397 7 6 4.1151 1.4573 1.3942 8 7 5.4231 1.5169 1.5173 9 14 3.0357 1.3898 2.9174 10 1 2.7849 2.7688 3.4078 11 1 1.7430 0.7417 2.5796 12 1 3.7214 0.6052 3.9755 13 7 1.6669 2.0924 -1.2588 14 6 0.4510 2.6588 -1.3902 15 8 -0.3363 2.6301 -0.4640 16 7 0.1078 3.2571 -2.5480 17 6 -1.1179 3.9240 -2.6546 18 6 -2.2056 3.5055 -1.8988 19 6 -3.4131 4.1677 -2.0017 20 6 -3.5443 5.2405 -2.8641 21 6 -2.4639 5.6576 -3.6234 22 9 -2.5950 6.7058 -4.4657 23 6 -1.2506 5.0007 -3.5205 24 6 -0.0743 5.4545 -4.3461 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.8274 1.5254 2.3989 31 1 2.2948 2.1150 -1.9977 32 1 0.7104 3.2256 -3.3074 33 1 -2.1058 2.6652 -1.2278 34 1 -4.2574 3.8446 -1.4107 35 1 -4.4910 5.7537 -2.9460 36 1 -0.0728 4.9243 -5.2984 37 1 -0.1496 6.5267 -4.5272 38 1 0.8501 5.2407 -3.8096 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156145729.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:13 Heat of formation + Delta-G solvation = -53.833067 kcal Electronic energy + Delta-G solvation = -21945.575287 eV Core-core repulsion = 18509.424874 eV Total energy + Delta-G solvation = -3436.150413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.92504 -40.52922 -38.57634 -35.64075 -34.50506 -32.54639 -32.37375 -31.47833 -29.25052 -27.52470 -26.84595 -23.39676 -22.59324 -21.67111 -20.82587 -19.79027 -18.56177 -17.96840 -16.74455 -16.19614 -15.89773 -15.71664 -15.64897 -15.09372 -14.70588 -14.33305 -13.68464 -13.56466 -13.47396 -13.16450 -12.86851 -12.73048 -12.55502 -12.05627 -11.90652 -11.85540 -11.68453 -11.27953 -10.98699 -10.81844 -10.76978 -10.26712 -9.98231 -9.82748 -9.45577 -9.23311 -8.80408 -8.61274 -8.27742 -7.88040 -6.27817 -4.31550 1.17686 1.24158 2.91707 3.23748 3.32363 3.39192 3.41821 3.81654 4.28332 4.29437 4.63760 4.69697 4.79047 5.00714 5.12479 5.34448 5.43925 5.45507 5.58579 5.80883 6.00900 6.02289 6.04236 6.11379 6.19053 6.26754 6.44941 6.54540 6.59351 6.73955 6.87490 6.94144 7.06135 7.10628 7.30077 7.40654 7.49105 8.18030 8.55381 8.72616 9.00471 9.33864 10.83772 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027101 B = 0.004335 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.927411 B = 6457.916792 C = 6851.646823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.256 3.744 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.078 0.922 7 C 0.082 3.918 8 N -0.888 5.888 9 Si 0.869 3.131 10 H -0.275 1.275 11 H -0.252 1.252 12 H -0.284 1.284 13 N -0.710 5.710 14 C 0.693 3.307 15 O -0.577 6.577 16 N -0.690 5.690 17 C 0.209 3.791 18 C -0.137 4.137 19 C -0.078 4.078 20 C -0.179 4.179 21 C 0.112 3.888 22 F -0.141 7.141 23 C -0.162 4.162 24 C -0.112 4.112 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.029 0.971 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.268 0.732 31 H 0.391 0.609 32 H 0.405 0.595 33 H 0.159 0.841 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.673 4.485 -10.486 17.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.153 3.847 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.096 0.904 7 C -0.122 4.122 8 N -0.524 5.524 9 Si 0.695 3.305 10 H -0.201 1.201 11 H -0.176 1.176 12 H -0.210 1.210 13 N -0.361 5.361 14 C 0.394 3.606 15 O -0.455 6.455 16 N -0.336 5.336 17 C 0.111 3.889 18 C -0.157 4.157 19 C -0.097 4.097 20 C -0.199 4.199 21 C 0.093 3.907 22 F -0.120 7.120 23 C -0.167 4.167 24 C -0.169 4.169 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.225 0.775 32 H 0.241 0.759 33 H 0.176 0.824 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.081 4.420 -9.453 17.526 hybrid contribution 0.221 0.234 -0.010 0.322 sum -13.859 4.654 -9.463 17.415 Atomic orbital electron populations 1.21889 0.97386 0.98804 1.02011 1.22170 0.93815 0.99601 1.01270 1.19062 0.95433 0.88672 0.81544 0.93101 1.20989 0.88549 1.53000 0.94636 0.90360 1.24881 0.94914 0.93505 0.98934 1.69883 1.09647 1.48585 1.24308 0.86975 0.81704 0.79036 0.82740 1.20113 1.17588 1.21030 1.45822 1.12915 1.58375 1.19012 1.16138 0.83747 0.78738 0.81952 1.90839 1.50889 1.64339 1.39402 1.42853 1.19111 1.56655 1.15001 1.17128 0.85280 0.90691 0.95797 1.21712 0.90546 1.02468 1.01002 1.20900 0.97566 0.94353 0.96847 1.21019 0.98324 1.00652 0.99945 1.17136 0.94117 0.87009 0.92486 1.91458 1.96391 1.54972 1.69132 1.19515 0.95746 0.97307 1.04084 1.20627 0.95322 1.02176 0.98751 0.93017 0.93216 0.95173 0.92990 0.91961 0.92218 0.77546 0.75928 0.82355 0.84988 0.85165 0.91026 0.90981 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.53 37.16 0.32 -2.41 16 2 C -0.13 -2.68 5.12 -26.73 -0.14 -2.82 16 3 C 0.26 5.75 1.77 -69.08 -0.12 5.62 16 4 H 0.05 1.26 5.33 -51.93 -0.28 0.99 16 5 C -0.53 -13.80 9.06 -34.44 -0.31 -14.11 16 6 H 0.08 2.13 8.04 -52.48 -0.42 1.71 16 7 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 8 N -0.89 -25.63 13.96 55.43 0.77 -24.86 16 9 Si 0.87 20.79 26.28 -169.99 -4.47 16.33 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.25 -5.82 5.84 56.52 0.33 -5.49 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.71 -13.28 5.03 -59.81 -0.30 -13.58 16 14 C 0.69 12.45 7.04 -86.92 -0.61 11.84 16 15 O -0.58 -11.92 10.59 5.29 0.06 -11.86 16 16 N -0.69 -9.70 4.88 -14.23 -0.07 -9.77 16 17 C 0.21 2.96 6.38 -83.70 -0.53 2.43 16 18 C -0.14 -1.98 8.75 -39.38 -0.34 -2.32 16 19 C -0.08 -0.93 10.04 -39.62 -0.40 -1.33 16 20 C -0.18 -2.07 10.02 -39.48 -0.40 -2.46 16 21 C 0.11 1.42 7.24 -39.45 -0.29 1.13 16 22 F -0.14 -1.76 16.48 2.25 0.04 -1.73 16 23 C -0.16 -2.06 5.90 -104.37 -0.62 -2.68 16 24 C -0.11 -1.15 9.28 36.01 0.33 -0.82 16 25 H 0.05 1.05 7.88 -51.93 -0.41 0.64 16 26 H 0.05 0.93 5.63 -51.93 -0.29 0.64 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.34 6.62 -51.93 -0.34 1.00 16 30 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.39 6.37 8.60 -40.82 -0.35 6.02 16 32 H 0.41 4.45 7.61 -40.82 -0.31 4.14 16 33 H 0.16 2.58 5.80 -52.49 -0.30 2.27 16 34 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.72 7.64 -51.93 -0.40 0.32 16 38 H 0.07 0.71 7.07 -51.93 -0.37 0.34 16 LS Contribution 310.92 15.07 4.69 4.69 Total: -1.00 -29.88 310.92 -7.28 -37.16 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -4.79 Total: 9.40 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -3.20 Total: -5.78 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.40 Total: -48.21 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.06 Total: -11.86 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.47 Total: 16.33 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.88 -7.28 -37.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156145729.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.674 kcal (2) G-P(sol) polarization free energy of solvation -29.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds