Wall clock time and date at job start Tue Mar 31 2020 01:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47450 * 2 1 4 4 H 1.08998 * 109.47155 * 54.99633 * 3 2 1 5 5 C 1.50692 * 109.47410 * 174.99919 * 3 2 1 6 6 H 1.08002 * 120.00233 * 119.99966 * 5 3 2 7 7 C 1.37883 * 119.99869 * 299.99921 * 5 3 2 8 8 N 1.31510 * 119.99995 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99755 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47317 * 59.99822 * 9 7 5 11 11 H 1.48499 * 109.47004 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47521 * 300.00056 * 9 7 5 13 13 N 1.46506 * 109.46585 * 294.99846 * 3 2 1 14 14 C 1.34773 * 119.99865 * 85.00219 * 13 3 2 15 15 O 1.21588 * 120.00262 * 359.97438 * 14 13 3 16 16 N 1.34778 * 119.99927 * 179.97438 * 14 13 3 17 17 C 1.40078 * 120.00212 * 184.99203 * 16 14 13 18 18 C 1.38810 * 120.07556 * 94.75414 * 17 16 14 19 19 C 1.50694 * 120.01962 * 0.02562 * 18 17 16 20 20 C 1.38140 * 119.95196 * 180.02562 * 18 17 16 21 21 C 1.38281 * 120.11502 * 359.97438 * 20 18 17 22 22 C 1.38268 * 120.15261 * 0.02562 * 21 20 18 23 23 C 1.38311 * 120.04458 * 359.97438 * 22 21 20 24 24 F 1.35095 * 120.05388 * 180.27068 * 23 22 21 25 25 H 1.09000 * 109.47465 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46917 * 300.00566 * 1 2 3 27 27 H 1.09003 * 109.46559 * 60.00067 * 1 2 3 28 28 H 1.08995 * 109.47634 * 239.99430 * 2 1 3 29 29 H 1.08998 * 109.47232 * 119.99785 * 2 1 3 30 30 H 0.96998 * 119.99897 * 179.97438 * 8 7 5 31 31 H 0.97000 * 119.99837 * 264.99585 * 13 3 2 32 32 H 0.97001 * 120.00180 * 4.99225 * 16 14 13 33 33 H 1.09005 * 109.47056 * 89.99909 * 19 18 17 34 34 H 1.09004 * 109.47343 * 209.99847 * 19 18 17 35 35 H 1.09000 * 109.47454 * 329.99935 * 19 18 17 36 36 H 1.08005 * 119.94105 * 179.97438 * 20 18 17 37 37 H 1.07992 * 119.92455 * 179.97438 * 21 20 18 38 38 H 1.07996 * 119.98131 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4061 0.3375 2.1734 9 14 6.0049 0.8800 1.3812 10 1 6.5005 2.2799 1.3808 11 1 6.3977 0.2168 2.6505 12 1 6.5967 0.1452 0.2344 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6644 -1.3671 15 8 -0.3415 2.6319 -0.4321 16 7 0.0789 3.2673 -2.5186 17 6 -1.1430 3.9468 -2.6044 18 6 -1.1951 5.3156 -2.3797 19 6 0.0637 6.0728 -2.0434 20 6 -2.4015 5.9831 -2.4645 21 6 -3.5576 5.2901 -2.7735 22 6 -3.5110 3.9266 -2.9982 23 6 -2.3065 3.2519 -2.9150 24 9 -2.2599 1.9206 -3.1399 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0609 2.9500 31 1 2.2720 2.1231 -1.9979 32 1 0.6685 3.2307 -3.2879 33 1 0.5318 6.4258 -2.9623 34 1 -0.1832 6.9254 -1.4106 35 1 0.7530 5.4150 -1.5140 36 1 -2.4419 7.0480 -2.2892 37 1 -4.4992 5.8149 -2.8386 38 1 -4.4156 3.3881 -3.2390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158687896.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:09 Heat of formation + Delta-G solvation = -54.400060 kcal Electronic energy + Delta-G solvation = -22236.200019 eV Core-core repulsion = 18800.025019 eV Total energy + Delta-G solvation = -3436.175000 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.70979 -40.07271 -38.55632 -35.39812 -34.14773 -32.49683 -32.22043 -30.85645 -29.18647 -27.15198 -26.59550 -23.27825 -22.44977 -21.70708 -20.61638 -19.47078 -18.22015 -17.55912 -16.83094 -16.54441 -15.96675 -15.32330 -15.17146 -14.67116 -14.52595 -13.95749 -13.74800 -13.57754 -13.27659 -13.22636 -12.61143 -12.28580 -12.11591 -11.76367 -11.74655 -11.53660 -11.28273 -11.20043 -10.96317 -10.79848 -10.30669 -10.12828 -9.60035 -9.39803 -9.02273 -8.99471 -8.74937 -8.60807 -8.47351 -7.76240 -6.09932 -4.19287 1.10384 1.16567 3.22058 3.26647 3.32180 3.34380 3.55025 3.90115 4.26605 4.34241 4.71960 4.79032 5.02790 5.15039 5.21458 5.22346 5.50999 5.54416 5.62904 5.89173 6.02155 6.17567 6.25896 6.41144 6.47302 6.55491 6.63219 6.73655 7.03765 7.10967 7.22607 7.39018 7.44820 7.53192 7.67235 7.91178 8.03472 8.22662 8.78051 8.91976 9.34852 9.51007 10.95426 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027615 B = 0.004570 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.700717 B = 6125.221750 C = 6737.215966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.288 3.712 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.721 5.721 14 C 0.698 3.302 15 O -0.580 6.580 16 N -0.712 5.712 17 C 0.134 3.866 18 C -0.052 4.052 19 C -0.114 4.114 20 C -0.130 4.130 21 C -0.089 4.089 22 C -0.161 4.161 23 C 0.113 3.887 24 F -0.131 7.131 25 H 0.020 0.980 26 H 0.048 0.952 27 H 0.040 0.960 28 H 0.030 0.970 29 H 0.098 0.902 30 H 0.265 0.735 31 H 0.385 0.615 32 H 0.400 0.600 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.319 9.813 -11.974 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.186 3.814 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.372 5.372 14 C 0.399 3.601 15 O -0.457 6.457 16 N -0.368 5.368 17 C 0.040 3.960 18 C -0.054 4.054 19 C -0.170 4.170 20 C -0.149 4.149 21 C -0.107 4.107 22 C -0.180 4.180 23 C 0.092 3.908 24 F -0.110 7.110 25 H 0.039 0.961 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.216 0.784 32 H 0.236 0.764 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.941 9.581 -10.839 17.553 hybrid contribution 1.474 -0.412 -0.642 1.660 sum -8.466 9.169 -11.482 16.958 Atomic orbital electron populations 1.21812 0.98258 0.97856 1.01356 1.21955 0.92708 0.99931 1.02133 1.18687 0.93874 0.88860 0.79991 0.93350 1.21187 0.90676 1.39111 1.06268 0.92175 1.24874 0.98545 0.94833 0.95378 1.69891 1.35183 1.37500 1.09322 0.86513 0.84893 0.78261 0.77432 1.20228 1.21145 1.20196 1.45770 1.13180 1.59097 1.19188 1.16080 0.83481 0.78457 0.82067 1.90916 1.52001 1.64373 1.38382 1.42539 1.19850 1.59476 1.14929 1.17077 0.85098 0.90296 1.03544 1.20093 0.96399 0.92391 0.96537 1.20751 0.94641 0.99868 1.01774 1.20966 0.91566 1.00222 1.02136 1.20959 0.98602 0.93149 0.98019 1.21033 0.96461 0.95448 1.05067 1.18087 0.94286 0.77803 1.00668 1.91504 1.97174 1.30595 1.91715 0.96058 0.93272 0.94140 0.95128 0.88340 0.92511 0.78355 0.76364 0.90887 0.91160 0.90673 0.85223 0.85050 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.51 37.16 0.32 -2.90 16 2 C -0.13 -3.21 5.45 -26.73 -0.15 -3.36 16 3 C 0.29 7.34 2.24 -69.08 -0.15 7.18 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -14.08 8.73 -34.44 -0.30 -14.38 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.81 11.29 55.43 0.63 -24.19 16 9 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 13 N -0.72 -15.16 5.03 -59.81 -0.30 -15.46 16 14 C 0.70 14.45 6.74 -86.92 -0.59 13.86 16 15 O -0.58 -14.38 13.46 5.29 0.07 -14.31 16 16 N -0.71 -11.40 4.13 -14.16 -0.06 -11.46 16 17 C 0.13 2.07 5.27 -83.58 -0.44 1.63 16 18 C -0.05 -0.69 5.89 -104.45 -0.62 -1.30 16 19 C -0.11 -1.33 9.77 36.00 0.35 -0.97 16 20 C -0.13 -1.40 9.69 -39.60 -0.38 -1.78 16 21 C -0.09 -0.90 10.04 -39.55 -0.40 -1.30 16 22 C -0.16 -1.95 10.02 -39.54 -0.40 -2.34 16 23 C 0.11 1.73 7.31 -39.26 -0.29 1.45 16 24 F -0.13 -2.27 17.08 2.25 0.04 -2.23 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 27 H 0.04 0.96 5.64 -51.93 -0.29 0.67 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.38 6.95 8.56 -40.82 -0.35 6.60 16 32 H 0.40 5.10 8.84 -40.82 -0.36 4.74 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 35 H 0.07 1.08 7.15 -51.93 -0.37 0.71 16 36 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 321.11 15.07 4.84 4.84 Total: -1.00 -31.89 321.11 -7.92 -39.82 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -4.98 Total: 9.97 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -3.13 Total: -2.52 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.27 Total: -51.11 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.07 Total: -14.31 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.89 -7.92 -39.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158687896.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.584 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds