Wall clock time and date at job start Tue Mar 31 2020 01:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47346 * 2 1 4 4 H 1.08999 * 109.47288 * 304.99493 * 3 2 1 5 5 C 1.50703 * 109.47304 * 184.99871 * 3 2 1 6 6 H 1.08001 * 119.99820 * 240.00196 * 5 3 2 7 7 C 1.37874 * 120.00213 * 59.99475 * 5 3 2 8 8 N 1.31520 * 119.99764 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00129 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47025 * 90.00151 * 9 7 5 11 11 H 1.48499 * 109.47178 * 210.00059 * 9 7 5 12 12 H 1.48499 * 109.47252 * 329.99758 * 9 7 5 13 13 N 1.46497 * 109.47500 * 64.99647 * 3 2 1 14 14 C 1.34781 * 119.99923 * 275.00380 * 13 3 2 15 15 O 1.21582 * 119.99817 * 359.97438 * 14 13 3 16 16 N 1.34778 * 119.99895 * 179.97438 * 14 13 3 17 17 C 1.40073 * 119.99608 * 184.97951 * 16 14 13 18 18 C 1.38795 * 120.08434 * 264.38350 * 17 16 14 19 19 C 1.50706 * 120.01905 * 0.02562 * 18 17 16 20 20 C 1.38145 * 119.95989 * 179.97438 * 18 17 16 21 21 C 1.38274 * 120.10927 * 0.02562 * 20 18 17 22 22 C 1.38273 * 120.15646 * 0.27643 * 21 20 18 23 23 C 1.38306 * 120.04126 * 359.44870 * 22 21 20 24 24 F 1.35098 * 120.05662 * 180.25921 * 23 22 21 25 25 H 1.08998 * 109.47260 * 300.00889 * 1 2 3 26 26 H 1.09001 * 109.46591 * 60.00341 * 1 2 3 27 27 H 1.08998 * 109.47391 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47260 * 239.99110 * 2 1 3 29 29 H 1.09005 * 109.47034 * 119.99860 * 2 1 3 30 30 H 0.96998 * 119.99662 * 179.97438 * 8 7 5 31 31 H 0.97003 * 120.00047 * 94.99926 * 13 3 2 32 32 H 0.97000 * 119.99873 * 4.98430 * 16 14 13 33 33 H 1.08997 * 109.47157 * 269.98081 * 19 18 17 34 34 H 1.09006 * 109.46961 * 29.97581 * 19 18 17 35 35 H 1.09000 * 109.47166 * 149.97488 * 19 18 17 36 36 H 1.08005 * 119.94467 * 179.97438 * 20 18 17 37 37 H 1.07999 * 119.92030 * 179.97438 * 21 20 18 38 38 H 1.07997 * 119.97604 * 179.70353 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1434 0.8782 -1.2278 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3809 10 1 6.5539 -0.3522 -0.7595 11 1 6.3837 0.9211 -2.8162 12 1 6.5576 2.0718 -0.6888 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6645 1.3668 15 8 -0.3412 2.6326 0.4316 16 7 0.0783 3.2667 2.5185 17 6 -1.2218 3.7637 2.6754 18 6 -1.4911 5.1009 2.4189 19 6 -0.3844 6.0204 1.9705 20 6 -2.7744 5.5883 2.5740 21 6 -3.7913 4.7462 2.9848 22 6 -3.5270 3.4146 3.2476 23 6 -2.2457 2.9187 3.0890 24 9 -1.9882 1.6166 3.3406 25 1 -0.3634 0.5140 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8294 -0.0607 -2.9501 31 1 2.2719 2.1232 1.9977 32 1 0.7220 3.3559 3.2388 33 1 0.0886 6.4719 2.8426 34 1 0.3564 5.4506 1.4096 35 1 -0.7978 6.8036 1.3350 36 1 -2.9836 6.6290 2.3747 37 1 -4.7933 5.1305 3.1054 38 1 -4.3224 2.7606 3.5729 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158688024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:12 Heat of formation + Delta-G solvation = -54.466994 kcal Electronic energy + Delta-G solvation = -22250.934518 eV Core-core repulsion = 18814.756616 eV Total energy + Delta-G solvation = -3436.177902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.72390 -40.07478 -38.55694 -35.39885 -34.14278 -32.51505 -32.20689 -30.85507 -29.18566 -27.14273 -26.60529 -23.28127 -22.44907 -21.71114 -20.61694 -19.46881 -18.21957 -17.55985 -16.85015 -16.54215 -15.96907 -15.33572 -15.15593 -14.62326 -14.55519 -14.02642 -13.74429 -13.57122 -13.26135 -13.22299 -12.61844 -12.28835 -12.09518 -11.75302 -11.74916 -11.53526 -11.29403 -11.20431 -10.95939 -10.79738 -10.29535 -10.13468 -9.60455 -9.39824 -9.02791 -8.99565 -8.73494 -8.60731 -8.47749 -7.76031 -6.10005 -4.19259 1.10248 1.16147 3.21951 3.25528 3.32718 3.35310 3.54723 3.90544 4.25629 4.34297 4.71487 4.79157 5.02949 5.14520 5.21587 5.22551 5.50745 5.54582 5.63109 5.88926 6.01671 6.17637 6.25782 6.41676 6.47674 6.55779 6.62842 6.73832 7.03841 7.10940 7.22798 7.39338 7.44942 7.53289 7.67586 7.91156 8.03616 8.22806 8.78334 8.91988 9.34841 9.51069 10.95383 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028488 B = 0.004528 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.645513 B = 6181.790233 C = 6718.621742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.721 5.721 14 C 0.698 3.302 15 O -0.580 6.580 16 N -0.712 5.712 17 C 0.135 3.865 18 C -0.051 4.051 19 C -0.113 4.113 20 C -0.130 4.130 21 C -0.089 4.089 22 C -0.160 4.160 23 C 0.110 3.890 24 F -0.132 7.132 25 H 0.039 0.961 26 H 0.048 0.952 27 H 0.020 0.980 28 H 0.098 0.902 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.385 0.615 32 H 0.400 0.600 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.931 9.240 12.142 18.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.185 3.815 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.372 5.372 14 C 0.399 3.601 15 O -0.457 6.457 16 N -0.368 5.368 17 C 0.041 3.959 18 C -0.053 4.053 19 C -0.170 4.170 20 C -0.149 4.149 21 C -0.108 4.108 22 C -0.180 4.180 23 C 0.089 3.911 24 F -0.110 7.110 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.039 0.961 28 H 0.117 0.883 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.217 0.783 32 H 0.237 0.763 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.552 8.994 11.020 17.711 hybrid contribution 1.548 -0.374 0.630 1.713 sum -9.004 8.620 11.650 17.062 Atomic orbital electron populations 1.21810 0.98274 0.97853 1.01333 1.21948 0.92706 0.99902 1.02123 1.18690 0.93889 0.88871 0.80010 0.93340 1.21230 0.90691 1.38999 1.06252 0.92127 1.24877 0.98554 0.94851 0.95380 1.69907 1.35075 1.37595 1.09329 0.86454 0.84909 0.78398 0.77352 1.20576 1.21090 1.19908 1.45770 1.13486 1.58725 1.19230 1.16082 0.83555 0.78468 0.81975 1.90914 1.52236 1.64592 1.37950 1.42543 1.11039 1.64970 1.18240 1.17074 0.84823 0.91320 1.02704 1.20086 0.95668 0.93191 0.96316 1.20747 0.96795 0.98143 1.01298 1.20971 0.91842 1.00255 1.01791 1.20960 0.99418 0.92493 0.97884 1.21028 0.94962 0.97090 1.04878 1.18097 0.93992 0.78588 1.00468 1.91507 1.94800 1.33307 1.91411 0.94147 0.93279 0.96066 0.88341 0.95130 0.92576 0.78347 0.76349 0.90944 0.90647 0.91179 0.85226 0.85048 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.51 37.16 0.32 -2.91 16 2 C -0.13 -3.21 5.45 -26.74 -0.15 -3.36 16 3 C 0.29 7.34 2.24 -69.09 -0.15 7.18 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -14.09 8.73 -34.44 -0.30 -14.39 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.84 11.30 55.43 0.63 -24.22 16 9 Si 0.90 20.61 29.54 -169.99 -5.02 15.58 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.72 -15.22 5.03 -59.82 -0.30 -15.52 16 14 C 0.70 14.45 6.79 -86.91 -0.59 13.86 16 15 O -0.58 -14.33 13.46 5.29 0.07 -14.26 16 16 N -0.71 -11.40 4.12 -14.16 -0.06 -11.46 16 17 C 0.13 2.08 5.27 -83.58 -0.44 1.64 16 18 C -0.05 -0.67 5.89 -104.45 -0.62 -1.28 16 19 C -0.11 -1.32 9.77 36.01 0.35 -0.97 16 20 C -0.13 -1.39 9.69 -39.60 -0.38 -1.78 16 21 C -0.09 -0.91 10.04 -39.56 -0.40 -1.30 16 22 C -0.16 -1.93 10.02 -39.54 -0.40 -2.33 16 23 C 0.11 1.68 7.31 -39.25 -0.29 1.39 16 24 F -0.13 -2.26 17.08 2.25 0.04 -2.22 16 25 H 0.04 0.96 5.64 -51.93 -0.29 0.67 16 26 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.38 7.00 8.56 -40.82 -0.35 6.65 16 32 H 0.40 5.10 8.84 -40.82 -0.36 4.74 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.09 7.19 -51.93 -0.37 0.72 16 35 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 36 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 38 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 321.18 15.07 4.84 4.84 Total: -1.00 -31.91 321.18 -7.93 -39.83 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -4.98 Total: 9.97 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -3.14 Total: -2.55 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.27 Total: -51.20 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.07 Total: -14.26 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.91 -7.93 -39.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158688024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.634 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds