Wall clock time and date at job start Tue Mar 31 2020 01:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47346 * 2 1 4 4 H 1.08999 * 109.47288 * 304.99493 * 3 2 1 5 5 C 1.50703 * 109.47304 * 184.99871 * 3 2 1 6 6 H 1.08001 * 119.99820 * 240.00196 * 5 3 2 7 7 C 1.37874 * 120.00213 * 59.99475 * 5 3 2 8 8 N 1.31520 * 119.99764 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00129 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47025 * 90.00151 * 9 7 5 11 11 H 1.48499 * 109.47178 * 210.00059 * 9 7 5 12 12 H 1.48499 * 109.47252 * 329.99758 * 9 7 5 13 13 N 1.46497 * 109.47500 * 64.99647 * 3 2 1 14 14 C 1.34781 * 119.99923 * 275.00380 * 13 3 2 15 15 O 1.21582 * 119.99817 * 359.97438 * 14 13 3 16 16 N 1.34778 * 119.99895 * 179.97438 * 14 13 3 17 17 C 1.40073 * 119.99608 * 184.97951 * 16 14 13 18 18 C 1.38795 * 120.08434 * 264.38350 * 17 16 14 19 19 C 1.50706 * 120.01905 * 0.02562 * 18 17 16 20 20 C 1.38145 * 119.95989 * 179.97438 * 18 17 16 21 21 C 1.38274 * 120.10927 * 0.02562 * 20 18 17 22 22 C 1.38273 * 120.15646 * 0.27643 * 21 20 18 23 23 C 1.38306 * 120.04126 * 359.44870 * 22 21 20 24 24 F 1.35098 * 120.05662 * 180.25921 * 23 22 21 25 25 H 1.08998 * 109.47260 * 300.00889 * 1 2 3 26 26 H 1.09001 * 109.46591 * 60.00341 * 1 2 3 27 27 H 1.08998 * 109.47391 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47260 * 239.99110 * 2 1 3 29 29 H 1.09005 * 109.47034 * 119.99860 * 2 1 3 30 30 H 0.96998 * 119.99662 * 179.97438 * 8 7 5 31 31 H 0.97003 * 120.00047 * 94.99926 * 13 3 2 32 32 H 0.97000 * 119.99873 * 4.98430 * 16 14 13 33 33 H 1.08997 * 109.47157 * 269.98081 * 19 18 17 34 34 H 1.09006 * 109.46961 * 29.97581 * 19 18 17 35 35 H 1.09000 * 109.47166 * 149.97488 * 19 18 17 36 36 H 1.08005 * 119.94467 * 179.97438 * 20 18 17 37 37 H 1.07999 * 119.92030 * 179.97438 * 21 20 18 38 38 H 1.07997 * 119.97604 * 179.70353 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1434 0.8782 -1.2278 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3809 10 1 6.5539 -0.3522 -0.7595 11 1 6.3837 0.9211 -2.8162 12 1 6.5576 2.0718 -0.6888 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6645 1.3668 15 8 -0.3412 2.6326 0.4316 16 7 0.0783 3.2667 2.5185 17 6 -1.2218 3.7637 2.6754 18 6 -1.4911 5.1009 2.4189 19 6 -0.3844 6.0204 1.9705 20 6 -2.7744 5.5883 2.5740 21 6 -3.7913 4.7462 2.9848 22 6 -3.5270 3.4146 3.2476 23 6 -2.2457 2.9187 3.0890 24 9 -1.9882 1.6166 3.3406 25 1 -0.3634 0.5140 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8294 -0.0607 -2.9501 31 1 2.2719 2.1232 1.9977 32 1 0.7220 3.3559 3.2388 33 1 0.0886 6.4719 2.8426 34 1 0.3564 5.4506 1.4096 35 1 -0.7978 6.8036 1.3350 36 1 -2.9836 6.6290 2.3747 37 1 -4.7933 5.1305 3.1054 38 1 -4.3224 2.7606 3.5729 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158688024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:12 Heat of formation + Delta-G solvation = -74.978436 kcal Electronic energy + Delta-G solvation = -22251.823961 eV Core-core repulsion = 18814.756616 eV Total energy + Delta-G solvation = -3437.067345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.91453 -41.46422 -39.83851 -37.16144 -35.63770 -34.29671 -33.39952 -32.68265 -30.38803 -28.82183 -27.83647 -25.13559 -23.79210 -22.76673 -22.11500 -21.37800 -19.90814 -18.82135 -18.10365 -17.73974 -17.61584 -16.92985 -16.55998 -16.26886 -16.01158 -15.43448 -15.15145 -14.80696 -14.56630 -14.39703 -14.25350 -13.94795 -13.53638 -13.19589 -13.13503 -12.89691 -12.73737 -12.67252 -12.66101 -12.30325 -12.17852 -12.05828 -11.62307 -11.19753 -11.04122 -10.54204 -10.43056 -9.75788 -9.60443 -9.58333 -8.15310 -6.32742 0.10700 0.20839 1.45700 1.46406 1.56788 1.85090 2.25948 2.43505 2.59359 3.14049 3.23324 3.51668 3.79434 3.97714 4.29771 4.32565 4.46683 4.51816 4.54639 4.62185 4.73492 4.76445 4.96236 5.04443 5.13752 5.21328 5.23374 5.36643 5.42770 5.45537 5.51239 5.59718 5.62742 5.72991 5.84221 6.03821 6.16297 6.24212 6.75243 7.27903 7.36074 7.77467 8.90492 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028488 B = 0.004528 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.645513 B = 6181.790233 C = 6718.621742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C 0.298 3.702 4 H -0.002 1.002 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.973 3.027 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.264 1.264 13 N -0.718 5.718 14 C 0.701 3.299 15 O -0.623 6.623 16 N -0.692 5.692 17 C 0.099 3.901 18 C -0.063 4.063 19 C -0.110 4.110 20 C -0.122 4.122 21 C -0.076 4.076 22 C -0.161 4.161 23 C 0.074 3.926 24 F -0.152 7.152 25 H 0.036 0.964 26 H 0.024 0.976 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.039 0.961 30 H 0.265 0.735 31 H 0.400 0.600 32 H 0.415 0.585 33 H 0.096 0.904 34 H 0.040 0.960 35 H 0.087 0.913 36 H 0.165 0.835 37 H 0.174 0.826 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.413 10.849 13.722 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.160 4.160 3 C 0.194 3.806 4 H 0.016 0.984 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.797 3.203 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.188 1.188 13 N -0.371 5.371 14 C 0.402 3.598 15 O -0.503 6.503 16 N -0.348 5.348 17 C 0.006 3.994 18 C -0.065 4.065 19 C -0.166 4.166 20 C -0.141 4.141 21 C -0.094 4.094 22 C -0.180 4.180 23 C 0.053 3.947 24 F -0.131 7.131 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.235 0.765 32 H 0.254 0.746 33 H 0.114 0.886 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.183 0.817 37 H 0.192 0.808 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.033 10.632 12.679 19.888 hybrid contribution 1.566 -0.777 0.169 1.756 sum -9.467 9.854 12.848 18.757 Atomic orbital electron populations 1.21622 0.97343 0.98718 0.99945 1.21807 0.93393 0.99541 1.01211 1.18245 0.93553 0.88596 0.80179 0.98433 1.21553 0.91150 1.39057 1.06777 0.90958 1.25775 1.03400 0.94310 0.94925 1.70060 1.37115 1.38309 1.09873 0.85339 0.78927 0.78850 0.77157 1.19758 1.21218 1.18829 1.45407 1.14291 1.58883 1.18486 1.16153 0.82759 0.78264 0.82670 1.90874 1.53367 1.66174 1.39932 1.42177 1.12088 1.63557 1.16953 1.17426 0.84274 0.92638 1.05092 1.20355 0.97317 0.92408 0.96427 1.20749 0.95864 0.97886 1.02116 1.21430 0.90619 1.02059 0.99964 1.21481 1.01192 0.91315 0.95406 1.21386 0.93998 0.98482 1.04129 1.18539 0.95541 0.77978 1.02624 1.91443 1.95073 1.34724 1.91877 0.94465 0.95647 0.93904 0.90739 0.94269 0.92569 0.76541 0.74640 0.88577 0.94122 0.89467 0.81705 0.80840 0.82746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 8.51 71.98 0.61 -5.22 16 2 C -0.12 -6.23 5.45 30.59 0.17 -6.06 16 3 C 0.30 15.78 2.24 44.25 0.10 15.87 16 4 H 0.00 -0.14 7.58 -2.39 -0.02 -0.16 16 5 C -0.55 -29.26 8.73 25.60 0.22 -29.04 16 6 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 7 C 0.02 0.87 5.29 84.65 0.45 1.32 16 8 N -0.92 -52.92 11.30 21.45 0.24 -52.67 16 9 Si 0.97 42.23 29.54 68.60 2.03 44.26 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 13 N -0.72 -31.13 5.03 -461.42 -2.32 -33.45 16 14 C 0.70 29.95 6.79 179.05 1.21 31.16 16 15 O -0.62 -32.20 13.46 -3.98 -0.05 -32.25 16 16 N -0.69 -22.55 4.12 -316.99 -1.31 -23.85 16 17 C 0.10 3.04 5.27 38.15 0.20 3.24 16 18 C -0.06 -1.57 5.89 -19.75 -0.12 -1.68 16 19 C -0.11 -2.41 9.77 71.24 0.70 -1.72 16 20 C -0.12 -2.19 9.69 22.26 0.22 -1.98 16 21 C -0.08 -1.25 10.04 22.29 0.22 -1.03 16 22 C -0.16 -3.56 10.02 22.29 0.22 -3.34 16 23 C 0.07 2.26 7.31 22.48 0.16 2.42 16 24 F -0.15 -5.36 17.08 44.97 0.77 -4.59 16 25 H 0.04 1.82 5.64 -2.39 -0.01 1.81 16 26 H 0.02 1.32 7.84 -2.39 -0.02 1.30 16 27 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.07 4.24 5.95 -2.39 -0.01 4.23 16 29 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.40 14.63 8.56 -92.71 -0.79 13.84 16 32 H 0.42 10.62 8.84 -92.71 -0.82 9.80 16 33 H 0.10 1.60 8.14 -2.39 -0.02 1.59 16 34 H 0.04 1.18 7.19 -2.38 -0.02 1.16 16 35 H 0.09 1.59 8.09 -2.39 -0.02 1.57 16 36 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 37 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 38 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -72.49 321.18 3.22 -69.27 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: -0.52 Total: 29.34 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 4.37 Total: 3.94 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -3.38 Total: -109.97 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.05 Total: -32.25 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.77 Total: -4.59 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -72.49 3.22 -69.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158688024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.704 kcal (2) G-P(sol) polarization free energy of solvation -72.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds