Wall clock time and date at job start Tue Mar 31 2020 02:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99917 * 2 1 4 4 C 1.39044 * 120.00568 * 180.02562 * 2 1 3 5 5 C 1.39307 * 119.90929 * 359.97438 * 4 2 1 6 6 C 1.36522 * 120.27439 * 179.97438 * 5 4 2 7 7 C 1.39861 * 120.07663 * 0.02562 * 6 5 4 8 8 C 1.47373 * 120.08716 * 179.97438 * 7 6 5 9 9 O 1.21617 * 119.99788 * 130.91302 * 8 7 6 10 10 N 1.34772 * 120.00673 * 310.90903 * 8 7 6 11 11 C 1.46502 * 119.99450 * 4.40970 * 10 8 7 12 12 C 1.46497 * 120.00354 * 184.40960 * 10 8 7 13 13 C 1.50699 * 109.47017 * 90.00211 * 12 10 8 14 14 H 1.07991 * 120.00154 * 0.02562 * 13 12 10 15 15 C 1.37876 * 119.99635 * 180.02562 * 13 12 10 16 16 N 1.31512 * 120.00345 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00015 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47306 * 89.99763 * 17 15 13 19 19 H 1.48504 * 109.47116 * 210.00217 * 17 15 13 20 20 H 1.48503 * 109.46686 * 329.99827 * 17 15 13 21 21 C 1.40055 * 119.81520 * 0.02562 * 7 6 5 22 22 F 1.35106 * 120.13453 * 180.02562 * 21 7 6 23 23 C 1.38005 * 119.74031 * 359.70078 * 21 7 6 24 24 H 1.09001 * 109.46953 * 269.99802 * 1 2 3 25 25 H 1.09001 * 109.46906 * 150.00009 * 1 2 3 26 26 H 1.08994 * 109.47752 * 29.99589 * 1 2 3 27 27 H 1.09003 * 109.47019 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.47581 * 119.99763 * 3 2 1 29 29 H 1.08997 * 109.47577 * 240.00551 * 3 2 1 30 30 H 1.08003 * 119.86074 * 359.97438 * 5 4 2 31 31 H 1.08003 * 119.96443 * 180.02562 * 6 5 4 32 32 H 1.08997 * 109.47119 * 93.01379 * 11 10 8 33 33 H 1.09003 * 109.47085 * 213.00828 * 11 10 8 34 34 H 1.08998 * 109.47225 * 333.01181 * 11 10 8 35 35 H 1.09003 * 109.47160 * 210.00297 * 12 10 8 36 36 H 1.08999 * 109.46954 * 329.99818 * 12 10 8 37 37 H 0.97001 * 120.00216 * 179.97438 * 16 15 13 38 38 H 1.07990 * 120.04908 * 180.29228 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1603 -1.2041 -0.0005 5 6 1.4620 -2.4095 -0.0005 6 6 2.1372 -3.5961 -0.0016 7 6 3.5358 -3.6067 -0.0021 8 6 4.2648 -4.8875 -0.0027 9 8 5.1648 -5.0745 -0.7990 10 7 3.9344 -5.8515 0.8792 11 6 2.7889 -5.6649 1.7733 12 6 4.7206 -7.0859 0.9439 13 6 5.8431 -6.9153 1.9349 14 1 5.9589 -5.9810 2.4639 15 6 6.7221 -7.9520 2.1660 16 7 6.5807 -9.0900 1.5222 17 14 8.1130 -7.7409 3.3949 18 1 7.6512 -8.1610 4.7423 19 1 9.2681 -8.5787 2.9839 20 1 8.5254 -6.3148 3.4354 21 6 4.2413 -2.3969 -0.0011 22 9 5.5924 -2.3996 -0.0021 23 6 3.5511 -1.2018 -0.0057 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 -0.8900 -0.5138 26 1 -0.3634 0.8899 -0.5137 27 1 1.4891 2.0972 0.0005 28 1 2.8241 1.3266 0.8900 29 1 2.8241 1.3266 -0.8900 30 1 0.3820 -2.4053 0.0003 31 1 1.5907 -4.5277 -0.0020 32 1 1.8979 -6.0962 1.3171 33 1 2.9859 -6.1597 2.7243 34 1 2.6307 -4.6000 1.9437 35 1 4.0794 -7.9090 1.2594 36 1 5.1349 -7.3048 -0.0403 37 1 7.1993 -9.8193 1.6846 38 1 4.0902 -0.2661 -0.0097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160947237.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:16 Heat of formation + Delta-G solvation = -58.694922 kcal Electronic energy + Delta-G solvation = -21803.370651 eV Core-core repulsion = 18367.009412 eV Total energy + Delta-G solvation = -3436.361239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.98047 -41.18034 -39.96048 -36.99856 -36.61666 -34.73278 -32.16297 -31.45161 -29.59279 -28.93718 -27.53234 -26.45306 -24.81850 -23.40659 -22.44953 -20.62777 -18.77767 -18.65113 -18.05580 -17.80305 -17.15853 -16.85817 -16.65966 -16.24344 -15.88321 -15.86358 -15.59800 -15.20975 -14.75623 -14.33901 -13.93899 -13.79587 -13.50017 -13.46691 -13.36063 -13.30095 -13.16249 -13.00101 -12.85222 -12.71366 -12.52739 -12.24180 -12.00592 -11.74828 -10.92666 -10.66769 -10.62504 -9.91121 -9.46861 -8.37310 -8.23941 -6.39725 0.03442 0.26160 1.33815 1.37845 1.48343 1.80017 2.08310 2.30058 2.42447 2.71219 3.04388 3.27962 3.66313 3.76194 4.04688 4.14344 4.27734 4.39679 4.48144 4.55274 4.57570 4.68198 4.79167 4.85550 4.92628 4.94483 4.97537 4.98338 5.09147 5.14198 5.22777 5.31659 5.53249 5.63787 5.82229 6.04057 6.22025 6.34333 6.65785 6.72199 7.24072 7.41376 8.82711 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029107 B = 0.004166 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.724453 B = 6719.266558 C = 7087.790022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.625 5.625 3 C 0.081 3.919 4 C 0.264 3.736 5 C -0.198 4.198 6 C -0.006 4.006 7 C -0.244 4.244 8 C 0.545 3.455 9 O -0.600 6.600 10 N -0.601 5.601 11 C 0.076 3.924 12 C 0.259 3.741 13 C -0.548 4.548 14 H 0.047 0.953 15 C 0.009 3.991 16 N -0.926 5.926 17 Si 0.969 3.031 18 H -0.258 1.258 19 H -0.277 1.277 20 H -0.278 1.278 21 C 0.163 3.837 22 F -0.152 7.152 23 C -0.243 4.243 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.173 0.827 31 H 0.155 0.845 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.032 0.968 36 H -0.002 1.002 37 H 0.269 0.731 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.791 21.563 -0.031 28.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.332 5.332 3 C -0.061 4.061 4 C 0.156 3.844 5 C -0.220 4.220 6 C -0.025 4.025 7 C -0.250 4.250 8 C 0.335 3.665 9 O -0.482 6.482 10 N -0.331 5.331 11 C -0.066 4.066 12 C 0.138 3.862 13 C -0.587 4.587 14 H 0.066 0.934 15 C -0.190 4.190 16 N -0.565 5.565 17 Si 0.793 3.207 18 H -0.183 1.183 19 H -0.202 1.202 20 H -0.203 1.203 21 C 0.142 3.858 22 F -0.131 7.131 23 C -0.267 4.267 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.122 0.878 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.190 0.810 31 H 0.173 0.827 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.050 0.950 36 H 0.016 0.984 37 H 0.078 0.922 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -18.368 21.481 -0.427 28.267 hybrid contribution 1.740 -0.482 0.355 1.840 sum -16.629 20.999 -0.073 26.786 Atomic orbital electron populations 1.22040 0.76815 1.04561 1.02743 1.46614 1.06787 1.02739 1.77031 1.21907 0.98026 0.84508 1.01669 1.17703 0.89536 0.87589 0.89575 1.20717 1.01775 0.89134 1.10332 1.20881 0.89600 1.00297 0.91749 1.19690 0.96146 0.90683 1.18501 1.18713 0.82719 0.84581 0.80524 1.90709 1.34197 1.81568 1.41771 1.48064 1.31150 1.18099 1.35824 1.22114 0.87320 1.03211 0.93937 1.18802 0.90260 0.81556 0.95584 1.21686 1.13703 0.99353 1.23937 0.93430 1.25859 1.00209 0.94603 0.98321 1.70044 1.38932 1.04526 1.43038 0.85405 0.78261 0.77877 0.79205 1.18291 1.20204 1.20278 1.17752 0.75976 0.94032 0.98012 1.91482 1.30730 1.97460 1.93385 1.20460 0.93833 0.96289 1.16119 0.91830 0.90079 0.89160 0.87797 0.92478 0.92517 0.80988 0.82729 0.89979 0.91504 0.89412 0.95010 0.98371 0.92231 0.83172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.48 10.14 127.77 1.30 1.77 16 2 N -0.62 -8.02 3.39 -747.36 -2.53 -10.56 16 3 C 0.08 0.75 9.38 127.77 1.20 1.95 16 4 C 0.26 5.24 6.55 38.46 0.25 5.49 16 5 C -0.20 -3.63 9.13 22.13 0.20 -3.43 16 6 C -0.01 -0.15 7.54 22.26 0.17 0.02 16 7 C -0.24 -9.07 4.90 -20.04 -0.10 -9.17 16 8 C 0.55 26.90 6.99 86.65 0.61 27.51 16 9 O -0.60 -36.33 16.20 -4.09 -0.07 -36.39 16 10 N -0.60 -28.51 2.86 -855.11 -2.44 -30.95 16 11 C 0.08 2.50 9.09 127.77 1.16 3.66 16 12 C 0.26 15.01 5.21 85.63 0.45 15.45 16 13 C -0.55 -33.84 9.39 25.60 0.24 -33.60 16 14 H 0.05 2.95 7.81 -2.92 -0.02 2.93 16 15 C 0.01 0.56 5.46 84.65 0.46 1.02 16 16 N -0.93 -58.00 13.29 21.45 0.28 -57.72 16 17 Si 0.97 47.10 29.54 68.60 2.03 49.13 16 18 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 20 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 21 C 0.16 5.94 7.25 22.66 0.16 6.10 16 22 F -0.15 -6.68 16.51 44.97 0.74 -5.94 16 23 C -0.24 -6.34 9.27 22.42 0.21 -6.13 16 24 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 25 H 0.08 0.39 6.17 -2.39 -0.01 0.38 16 26 H 0.09 0.21 7.92 -2.39 -0.02 0.19 16 27 H 0.10 0.39 7.79 -2.39 -0.02 0.37 16 28 H 0.06 0.58 7.94 -2.39 -0.02 0.56 16 29 H 0.06 0.57 7.92 -2.39 -0.02 0.56 16 30 H 0.17 1.76 6.10 -2.91 -0.02 1.74 16 31 H 0.16 3.28 6.56 -2.91 -0.02 3.26 16 32 H 0.08 2.10 7.55 -2.39 -0.02 2.08 16 33 H 0.07 2.27 8.10 -2.39 -0.02 2.25 16 34 H 0.09 2.47 5.68 -2.39 -0.01 2.46 16 35 H 0.03 1.81 8.07 -2.39 -0.02 1.79 16 36 H 0.00 -0.12 7.36 -2.39 -0.02 -0.14 16 37 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 38 H 0.15 3.31 6.69 -2.92 -0.02 3.29 16 Total: -1.00 -86.38 321.53 5.39 -80.99 By element: Atomic # 1 Polarization: -0.28 SS G_CDS: 1.07 Total: 0.80 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 6.31 Total: 10.65 kcal Atomic # 7 Polarization: -94.53 SS G_CDS: -4.69 Total: -99.23 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.07 Total: -36.39 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 0.74 Total: -5.94 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -86.38 5.39 -80.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160947237.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.290 kcal (2) G-P(sol) polarization free energy of solvation -86.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds