Wall clock time and date at job start Tue Mar 31 2020 02:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47096 * 2 1 4 4 C 1.36930 * 119.99641 * 266.73831 * 3 2 1 5 5 H 1.07994 * 119.99919 * 180.40682 * 4 3 2 6 6 C 1.39002 * 119.99923 * 0.41015 * 4 3 2 7 7 N 1.31404 * 120.00093 * 33.85753 * 6 4 3 8 8 Si 1.86800 * 119.99989 * 213.85188 * 6 4 3 9 9 H 1.48497 * 109.46728 * 95.00520 * 8 6 4 10 10 H 1.48500 * 109.47122 * 215.00065 * 8 6 4 11 11 H 1.48503 * 109.47201 * 335.00431 * 8 6 4 12 12 C 1.34768 * 120.00371 * 86.73845 * 3 2 1 13 13 O 1.21646 * 120.00347 * 355.01501 * 12 3 2 14 14 C 1.47273 * 119.99916 * 175.00744 * 12 3 2 15 15 C 1.39912 * 120.10015 * 306.56882 * 14 12 3 16 16 C 1.36521 * 120.07330 * 179.97438 * 15 14 12 17 17 C 1.39317 * 120.27331 * 0.04911 * 16 15 14 18 18 N 1.39058 * 119.90285 * 179.97438 * 17 16 15 19 19 C 1.46497 * 119.99803 * 5.70388 * 18 17 16 20 20 C 1.46498 * 120.00056 * 185.70336 * 18 17 16 21 21 C 1.39100 * 120.19469 * 0.22811 * 17 16 15 22 22 C 1.37989 * 119.91842 * 359.47023 * 21 17 16 23 23 F 1.35105 * 120.12995 * 180.27409 * 22 21 17 24 24 H 1.09000 * 109.46998 * 60.00391 * 1 2 3 25 25 H 1.08996 * 109.46787 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47143 * 300.00596 * 1 2 3 27 27 H 1.08995 * 109.47455 * 239.99509 * 2 1 3 28 28 H 1.09000 * 109.46998 * 119.99608 * 2 1 3 29 29 H 0.97001 * 119.99651 * 179.97438 * 7 6 4 30 30 H 1.08000 * 119.96551 * 359.97438 * 15 14 12 31 31 H 1.07993 * 119.86690 * 180.02562 * 16 15 14 32 32 H 1.08997 * 109.47476 * 354.94924 * 19 18 17 33 33 H 1.08999 * 109.46888 * 234.94986 * 19 18 17 34 34 H 1.09005 * 109.47003 * 114.95482 * 19 18 17 35 35 H 1.09000 * 109.47647 * 270.00086 * 20 18 17 36 36 H 1.09001 * 109.46854 * 30.00121 * 20 18 17 37 37 H 1.08999 * 109.47043 * 149.99717 * 20 18 17 38 38 H 1.08000 * 120.03731 * 179.74991 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3102 2.0041 -1.1840 5 1 2.6764 3.0201 -1.1837 6 6 2.1349 1.3289 -2.3862 7 7 1.1552 0.4629 -2.5167 8 14 3.2921 1.6525 -3.8165 9 1 4.3776 0.6391 -3.8139 10 1 2.5378 1.5665 -5.0928 11 1 3.8809 3.0089 -3.6798 12 6 2.1804 2.0387 1.1652 13 8 1.8363 1.5191 2.2099 14 6 2.7743 3.3864 1.1738 15 6 4.0099 3.6126 0.5577 16 6 4.5596 4.8622 0.5656 17 6 3.8956 5.9178 1.1867 18 7 4.4629 7.1874 1.1906 19 6 5.6931 7.4422 0.4371 20 6 3.8304 8.2700 1.9482 21 6 2.6693 5.7043 1.8077 22 6 2.1034 4.4458 1.7991 23 9 0.9099 4.2349 2.3961 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.0328 -0.0080 -3.3558 30 1 4.5294 2.7978 0.0754 31 1 5.5134 5.0332 0.0887 32 1 6.0614 6.5069 0.0156 33 1 6.4467 7.8622 1.1032 34 1 5.4865 8.1472 -0.3682 35 1 3.1156 8.7903 1.3106 36 1 3.3113 7.8541 2.8117 37 1 4.5935 8.9711 2.2860 38 1 2.1587 6.5235 2.2919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161030367.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:20 Heat of formation + Delta-G solvation = -39.089910 kcal Electronic energy + Delta-G solvation = -22401.400532 eV Core-core repulsion = 18965.889430 eV Total energy + Delta-G solvation = -3435.511102 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.85339 -40.98081 -39.88701 -37.04494 -36.73187 -33.55451 -32.41032 -31.80247 -30.49890 -28.90249 -26.93458 -26.24523 -24.16226 -23.29606 -22.33405 -21.02696 -19.54320 -18.32963 -17.98163 -17.50884 -16.85888 -16.61442 -16.35293 -16.12601 -15.84030 -15.56831 -15.35986 -15.25014 -14.80476 -14.38628 -14.00097 -13.60594 -13.43087 -13.32027 -13.25293 -13.14193 -12.96548 -12.87987 -12.75750 -12.61832 -12.20686 -12.03986 -11.84610 -11.65937 -10.80902 -10.70709 -10.34609 -9.85046 -9.79080 -8.38832 -8.23888 -5.72593 0.23104 0.38501 1.42293 1.52118 1.62989 2.00363 2.15826 2.31781 2.70107 3.03085 3.11965 3.40649 3.84401 4.04330 4.18756 4.24472 4.43174 4.49650 4.54883 4.58795 4.67427 4.73456 4.82295 4.85880 4.93277 4.96549 5.01314 5.06157 5.20529 5.29154 5.37464 5.45678 5.53987 5.73447 5.76558 5.79750 6.30707 6.43703 6.49159 7.12857 7.59002 8.02492 8.64680 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016955 B = 0.006567 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.068440 B = 4262.718587 C = 5493.422942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.129 3.871 3 N -0.431 5.431 4 C -0.369 4.369 5 H 0.112 0.888 6 C 0.009 3.991 7 N -0.860 5.860 8 Si 0.975 3.025 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.255 1.255 12 C 0.472 3.528 13 O -0.649 6.649 14 C -0.207 4.207 15 C -0.008 4.008 16 C -0.207 4.207 17 C 0.253 3.747 18 N -0.630 5.630 19 C 0.080 3.920 20 C 0.084 3.916 21 C -0.244 4.244 22 C 0.149 3.851 23 F -0.152 7.152 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.011 0.989 27 H 0.092 0.908 28 H 0.033 0.967 29 H 0.275 0.725 30 H 0.136 0.864 31 H 0.165 0.835 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.988 14.208 0.598 17.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.006 3.994 3 N -0.146 5.146 4 C -0.495 4.495 5 H 0.130 0.870 6 C -0.197 4.197 7 N -0.496 5.496 8 Si 0.798 3.202 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.178 1.178 12 C 0.263 3.737 13 O -0.540 6.540 14 C -0.213 4.213 15 C -0.028 4.028 16 C -0.228 4.228 17 C 0.147 3.853 18 N -0.339 5.339 19 C -0.062 4.062 20 C -0.058 4.058 21 C -0.267 4.267 22 C 0.128 3.872 23 F -0.131 7.131 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.030 0.970 27 H 0.110 0.890 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.154 0.846 31 H 0.182 0.818 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 9.766 14.006 0.927 17.100 hybrid contribution -0.518 -0.479 -0.422 0.822 sum 9.248 13.527 0.505 16.394 Atomic orbital electron populations 1.21779 0.96172 1.00698 0.99937 1.21323 0.95075 0.83215 0.99814 1.44030 1.53631 1.11582 1.05400 1.20036 1.45489 1.01216 0.82780 0.87045 1.26023 0.96377 0.96370 1.00881 1.70319 1.24480 1.27263 1.27525 0.85206 0.78762 0.79685 0.76594 1.19766 1.21149 1.17823 1.18202 0.85146 0.86786 0.83570 1.90571 1.59327 1.70601 1.33522 1.19706 0.99759 0.93250 1.08577 1.20705 0.91679 0.97955 0.92419 1.20690 1.03324 0.90948 1.07884 1.17592 0.90037 0.86296 0.91340 1.46471 1.27825 1.06275 1.53346 1.21991 0.84883 1.03014 0.96276 1.21857 0.99073 0.89237 0.95670 1.20454 0.98752 0.95446 1.12079 1.17712 0.81109 0.94043 0.94320 1.91427 1.44341 1.95855 1.81429 0.91378 0.91993 0.96983 0.89001 0.94843 0.91519 0.84579 0.81809 0.89840 0.90400 0.91563 0.92626 0.91546 0.88790 0.82914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.39 9.78 71.98 0.70 -5.69 16 2 C 0.13 6.71 5.27 86.38 0.46 7.17 16 3 N -0.43 -23.37 2.62 -639.43 -1.68 -25.05 16 4 C -0.37 -19.00 8.49 84.08 0.71 -18.28 16 5 H 0.11 5.55 5.57 -2.91 -0.02 5.53 16 6 C 0.01 0.43 4.78 84.94 0.41 0.83 16 7 N -0.86 -43.40 8.99 21.67 0.19 -43.20 16 8 Si 0.97 37.76 29.66 68.60 2.03 39.79 16 9 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 10 H -0.29 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 12 C 0.47 26.09 6.82 86.62 0.59 26.68 16 13 O -0.65 -39.84 16.52 -4.18 -0.07 -39.91 16 14 C -0.21 -9.64 4.79 -20.04 -0.10 -9.73 16 15 C -0.01 -0.30 7.59 22.27 0.17 -0.13 16 16 C -0.21 -6.02 9.24 22.13 0.20 -5.81 16 17 C 0.25 7.11 6.54 38.46 0.25 7.36 16 18 N -0.63 -12.48 3.39 -747.32 -2.53 -15.01 16 19 C 0.08 1.06 10.62 127.77 1.36 2.41 16 20 C 0.08 1.22 10.09 127.77 1.29 2.51 16 21 C -0.24 -8.03 9.12 22.42 0.20 -7.83 16 22 C 0.15 6.46 7.27 22.67 0.16 6.63 16 23 F -0.15 -7.28 16.64 44.97 0.75 -6.53 16 24 H 0.07 3.62 6.51 -2.39 -0.02 3.60 16 25 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 26 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.09 4.76 5.79 -2.39 -0.01 4.75 16 28 H 0.03 1.75 7.60 -2.39 -0.02 1.73 16 29 H 0.27 12.92 8.31 -92.71 -0.77 12.15 16 30 H 0.14 5.07 7.65 -2.91 -0.02 5.05 16 31 H 0.16 3.49 5.70 -2.91 -0.02 3.47 16 32 H 0.08 1.09 5.28 -2.39 -0.01 1.08 16 33 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 1.04 6.42 -2.39 -0.02 1.03 16 37 H 0.09 0.87 8.07 -2.39 -0.02 0.85 16 38 H 0.15 4.19 6.27 -2.91 -0.02 4.17 16 Total: -1.00 -69.75 313.41 6.19 -63.55 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 1.09 Total: 20.24 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 6.41 Total: 6.12 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -4.02 Total: -83.26 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -0.07 Total: -39.91 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 0.75 Total: -6.53 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Total: -69.75 6.19 -63.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161030367.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.463 kcal (2) G-P(sol) polarization free energy of solvation -69.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds