Wall clock time and date at job start Tue Mar 31 2020 03:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00217 * 2 1 4 4 C 1.50702 * 109.46832 * 293.95126 * 3 2 1 5 5 H 1.08003 * 119.99738 * 0.02562 * 4 3 2 6 6 C 1.37872 * 119.99743 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00226 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99824 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47191 * 60.00226 * 8 6 4 10 10 H 1.48501 * 109.47330 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47654 * 300.00208 * 8 6 4 12 12 C 1.46905 * 110.99785 * 123.95177 * 2 1 3 13 13 C 1.53003 * 109.47129 * 66.04764 * 12 2 1 14 14 C 1.50700 * 109.47247 * 179.97438 * 13 12 2 15 15 O 1.21294 * 119.99719 * 359.97438 * 14 13 12 16 16 N 1.34766 * 120.00384 * 179.97438 * 14 13 12 17 17 C 1.40045 * 120.00587 * 185.53281 * 16 14 13 18 18 C 1.38809 * 120.07182 * 24.80918 * 17 16 14 19 19 C 1.38151 * 119.95125 * 179.97438 * 18 17 16 20 20 C 1.38279 * 120.11073 * 359.97438 * 19 18 17 21 21 C 1.38262 * 120.15847 * 359.97438 * 20 19 18 22 22 C 1.38315 * 120.04645 * 0.02562 * 21 20 19 23 23 F 1.35094 * 120.05690 * 179.97438 * 22 21 20 24 24 H 1.08996 * 109.47060 * 296.04836 * 1 2 3 25 25 H 1.08997 * 109.46767 * 56.05277 * 1 2 3 26 26 H 1.09003 * 109.46800 * 176.04764 * 1 2 3 27 27 H 1.08999 * 109.47126 * 53.95126 * 3 2 1 28 28 H 1.08996 * 109.47121 * 173.95469 * 3 2 1 29 29 H 0.97001 * 120.00183 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46885 * 306.04777 * 12 2 1 31 31 H 1.08998 * 109.46854 * 186.04618 * 12 2 1 32 32 H 1.09000 * 109.46779 * 59.99936 * 13 12 2 33 33 H 1.08997 * 109.46709 * 300.00012 * 13 12 2 34 34 H 0.97003 * 119.99957 * 5.53130 * 16 14 13 35 35 H 1.07995 * 120.02798 * 359.95622 * 18 17 16 36 36 H 1.07998 * 119.94395 * 180.02562 * 19 18 17 37 37 H 1.08005 * 119.92011 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.97761 * 179.74040 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0740 1.5113 -2.0485 6 6 2.0269 3.3493 -1.5285 7 7 2.7120 4.0018 -0.6150 8 14 1.5832 4.1866 -3.1384 9 1 0.1060 4.2228 -3.2868 10 1 2.1142 5.5734 -3.1379 11 1 2.1759 3.4295 -4.2700 12 6 1.9954 -0.7660 1.1377 13 6 1.6314 -2.2426 0.9704 14 6 2.1720 -3.0285 2.1372 15 8 2.7882 -2.4632 3.0158 16 7 1.9707 -4.3594 2.2044 17 6 2.3705 -5.0715 3.3421 18 6 2.4846 -4.4231 4.5641 19 6 2.8787 -5.1282 5.6849 20 6 3.1591 -6.4790 5.5916 21 6 3.0459 -7.1297 4.3769 22 6 2.6519 -6.4301 3.2506 23 9 2.5418 -7.0656 2.0635 24 1 -0.3633 0.4513 0.9232 25 1 -0.3633 0.5739 -0.8525 26 1 -0.3633 -1.0253 -0.0708 27 1 1.5611 1.9274 0.8309 28 1 3.0797 1.3443 0.1082 29 1 2.9867 4.9179 -0.7770 30 1 1.5610 -0.3872 2.0628 31 1 3.0797 -0.6611 1.1757 32 1 2.0658 -2.6213 0.0452 33 1 0.5472 -2.3474 0.9324 34 1 1.5490 -4.8241 1.4648 35 1 2.2658 -3.3682 4.6386 36 1 2.9670 -4.6237 6.6357 37 1 3.4673 -7.0271 6.4697 38 1 3.2697 -8.1839 4.3065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177188283.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:01 Heat of formation + Delta-G solvation = -48.990522 kcal Electronic energy + Delta-G solvation = -20857.693545 eV Core-core repulsion = 17421.753121 eV Total energy + Delta-G solvation = -3435.940425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.16464 -40.67542 -38.62736 -36.66555 -35.01977 -32.78998 -31.32221 -30.75243 -29.43355 -27.07453 -25.75347 -23.85520 -23.01294 -22.15123 -20.55738 -19.92681 -18.45818 -17.36219 -17.23013 -16.31598 -16.29864 -15.83553 -15.62377 -15.20134 -14.77481 -14.45823 -14.15187 -14.13510 -13.52372 -13.29877 -13.04116 -12.92465 -12.47956 -12.19010 -11.94532 -11.80982 -11.55889 -11.19914 -10.90573 -10.83350 -10.72816 -10.59018 -10.42057 -9.90521 -9.78558 -9.22457 -9.09674 -8.43079 -8.35208 -7.29211 -6.01732 -4.03641 0.82012 0.95311 2.45734 2.73847 3.33730 3.37950 3.39963 3.40564 3.91283 4.38230 4.44066 4.54642 4.71963 4.95116 5.03398 5.09189 5.23235 5.27037 5.33301 5.47452 5.68568 5.78374 5.84009 5.91209 6.05134 6.10826 6.16329 6.20872 6.38160 6.44678 6.68618 6.70977 7.08854 7.29086 7.34872 7.78141 7.92251 8.07957 8.17480 8.53027 9.03411 9.60349 11.09166 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.041981 B = 0.002775 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.805967 B =10087.193492 C =10453.161763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.543 5.543 3 C 0.193 3.807 4 C -0.509 4.509 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.070 3.930 13 C -0.134 4.134 14 C 0.518 3.482 15 O -0.513 6.513 16 N -0.675 5.675 17 C 0.127 3.873 18 C -0.109 4.109 19 C -0.106 4.106 20 C -0.117 4.117 21 C -0.133 4.133 22 C 0.059 3.941 23 F -0.139 7.139 24 H 0.012 0.988 25 H 0.076 0.924 26 H 0.044 0.956 27 H -0.008 1.008 28 H 0.031 0.969 29 H 0.262 0.738 30 H 0.031 0.969 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.415 0.585 35 H 0.156 0.844 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.366 -22.217 10.433 24.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.267 5.267 3 C 0.068 3.932 4 C -0.548 4.548 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.059 4.059 13 C -0.175 4.175 14 C 0.307 3.693 15 O -0.387 6.387 16 N -0.320 5.320 17 C 0.031 3.969 18 C -0.129 4.129 19 C -0.125 4.125 20 C -0.136 4.136 21 C -0.153 4.153 22 C 0.037 3.963 23 F -0.118 7.118 24 H 0.030 0.970 25 H 0.094 0.906 26 H 0.063 0.937 27 H 0.010 0.990 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.115 0.885 34 H 0.251 0.749 35 H 0.174 0.826 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.709 -21.774 10.552 24.257 hybrid contribution -0.651 0.474 -0.707 1.071 sum -2.360 -21.300 9.845 23.584 Atomic orbital electron populations 1.22281 0.89112 0.99360 1.00786 1.62116 1.06865 1.18169 1.39573 1.19730 0.95520 0.81229 0.96680 1.21117 1.35013 0.96939 1.01694 0.91874 1.24999 0.95305 0.97354 0.97001 1.69953 1.38205 1.11512 1.34097 0.86548 0.78648 0.78348 0.83764 1.20301 1.21363 1.20153 1.21754 1.01047 0.90025 0.93063 1.21742 1.02594 0.97025 0.96096 1.21253 0.78600 0.80946 0.88493 1.90675 1.38583 1.69291 1.40157 1.43650 1.60957 1.08832 1.18519 1.17888 1.00929 0.89697 0.88422 1.21448 0.99592 1.02244 0.89607 1.21184 0.98600 0.94054 0.98659 1.20998 1.00767 0.94727 0.97072 1.20970 1.01943 1.00744 0.91594 1.17425 1.06845 0.89802 0.82181 1.91475 1.94137 1.81864 1.44337 0.96979 0.90570 0.93702 0.98986 0.95093 0.92831 0.95039 0.90541 0.87633 0.88491 0.74893 0.82628 0.84955 0.85025 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.14 60.06 0.55 1.17 16 2 N -0.54 -11.58 4.75 -244.37 -1.16 -12.74 16 3 C 0.19 5.10 4.72 -4.97 -0.02 5.08 16 4 C -0.51 -14.32 8.46 -34.44 -0.29 -14.61 16 5 H 0.06 1.74 7.12 -52.48 -0.37 1.36 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 8 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.07 1.28 4.25 -3.82 -0.02 1.26 16 13 C -0.13 -1.79 5.63 -27.88 -0.16 -1.95 16 14 C 0.52 7.02 7.64 -10.99 -0.08 6.94 16 15 O -0.51 -8.59 13.15 5.55 0.07 -8.52 16 16 N -0.67 -7.49 5.31 -9.81 -0.05 -7.54 16 17 C 0.13 1.48 6.44 -83.59 -0.54 0.94 16 18 C -0.11 -1.26 8.72 -39.40 -0.34 -1.61 16 19 C -0.11 -0.96 10.04 -39.60 -0.40 -1.36 16 20 C -0.12 -0.91 10.04 -39.56 -0.40 -1.30 16 21 C -0.13 -1.14 10.02 -39.54 -0.40 -1.54 16 22 C 0.06 0.63 7.31 -39.25 -0.29 0.34 16 23 F -0.14 -1.49 16.81 2.25 0.04 -1.45 16 24 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.08 1.54 6.76 -51.93 -0.35 1.19 16 26 H 0.04 0.67 6.47 -51.93 -0.34 0.34 16 27 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 28 H 0.03 0.88 7.93 -51.93 -0.41 0.46 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.03 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.08 1.50 7.89 -51.93 -0.41 1.09 16 32 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.10 1.11 6.55 -51.93 -0.34 0.77 16 34 H 0.41 3.52 8.46 -40.82 -0.35 3.17 16 35 H 0.16 2.05 5.79 -52.49 -0.30 1.74 16 36 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 38 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 323.96 15.07 4.88 4.88 Total: -1.00 -32.33 323.96 -7.95 -40.28 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -4.96 Total: -0.13 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -2.48 Total: -5.17 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: -0.48 Total: -46.51 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.07 Total: -8.52 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.33 -7.95 -40.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177188283.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.714 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds