Wall clock time and date at job start Tue Mar 31 2020 03:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00217 * 2 1 4 4 C 1.50702 * 109.46832 * 293.95126 * 3 2 1 5 5 H 1.08003 * 119.99738 * 0.02562 * 4 3 2 6 6 C 1.37872 * 119.99743 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00226 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99824 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47191 * 60.00226 * 8 6 4 10 10 H 1.48501 * 109.47330 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47654 * 300.00208 * 8 6 4 12 12 C 1.46905 * 110.99785 * 123.95177 * 2 1 3 13 13 C 1.53003 * 109.47129 * 66.04764 * 12 2 1 14 14 C 1.50700 * 109.47247 * 179.97438 * 13 12 2 15 15 O 1.21294 * 119.99719 * 359.97438 * 14 13 12 16 16 N 1.34766 * 120.00384 * 179.97438 * 14 13 12 17 17 C 1.40045 * 120.00587 * 185.53281 * 16 14 13 18 18 C 1.38809 * 120.07182 * 24.80918 * 17 16 14 19 19 C 1.38151 * 119.95125 * 179.97438 * 18 17 16 20 20 C 1.38279 * 120.11073 * 359.97438 * 19 18 17 21 21 C 1.38262 * 120.15847 * 359.97438 * 20 19 18 22 22 C 1.38315 * 120.04645 * 0.02562 * 21 20 19 23 23 F 1.35094 * 120.05690 * 179.97438 * 22 21 20 24 24 H 1.08996 * 109.47060 * 296.04836 * 1 2 3 25 25 H 1.08997 * 109.46767 * 56.05277 * 1 2 3 26 26 H 1.09003 * 109.46800 * 176.04764 * 1 2 3 27 27 H 1.08999 * 109.47126 * 53.95126 * 3 2 1 28 28 H 1.08996 * 109.47121 * 173.95469 * 3 2 1 29 29 H 0.97001 * 120.00183 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46885 * 306.04777 * 12 2 1 31 31 H 1.08998 * 109.46854 * 186.04618 * 12 2 1 32 32 H 1.09000 * 109.46779 * 59.99936 * 13 12 2 33 33 H 1.08997 * 109.46709 * 300.00012 * 13 12 2 34 34 H 0.97003 * 119.99957 * 5.53130 * 16 14 13 35 35 H 1.07995 * 120.02798 * 359.95622 * 18 17 16 36 36 H 1.07998 * 119.94395 * 180.02562 * 19 18 17 37 37 H 1.08005 * 119.92011 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.97761 * 179.74040 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0740 1.5113 -2.0485 6 6 2.0269 3.3493 -1.5285 7 7 2.7120 4.0018 -0.6150 8 14 1.5832 4.1866 -3.1384 9 1 0.1060 4.2228 -3.2868 10 1 2.1142 5.5734 -3.1379 11 1 2.1759 3.4295 -4.2700 12 6 1.9954 -0.7660 1.1377 13 6 1.6314 -2.2426 0.9704 14 6 2.1720 -3.0285 2.1372 15 8 2.7882 -2.4632 3.0158 16 7 1.9707 -4.3594 2.2044 17 6 2.3705 -5.0715 3.3421 18 6 2.4846 -4.4231 4.5641 19 6 2.8787 -5.1282 5.6849 20 6 3.1591 -6.4790 5.5916 21 6 3.0459 -7.1297 4.3769 22 6 2.6519 -6.4301 3.2506 23 9 2.5418 -7.0656 2.0635 24 1 -0.3633 0.4513 0.9232 25 1 -0.3633 0.5739 -0.8525 26 1 -0.3633 -1.0253 -0.0708 27 1 1.5611 1.9274 0.8309 28 1 3.0797 1.3443 0.1082 29 1 2.9867 4.9179 -0.7770 30 1 1.5610 -0.3872 2.0628 31 1 3.0797 -0.6611 1.1757 32 1 2.0658 -2.6213 0.0452 33 1 0.5472 -2.3474 0.9324 34 1 1.5490 -4.8241 1.4648 35 1 2.2658 -3.3682 4.6386 36 1 2.9670 -4.6237 6.6357 37 1 3.4673 -7.0271 6.4697 38 1 3.2697 -8.1839 4.3065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177188283.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:00 Heat of formation + Delta-G solvation = -70.989380 kcal Electronic energy + Delta-G solvation = -20858.647487 eV Core-core repulsion = 17421.753121 eV Total energy + Delta-G solvation = -3436.894367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.95575 -41.66277 -39.51858 -38.30459 -35.98105 -34.84595 -32.64662 -31.53841 -30.43940 -28.98829 -27.32139 -25.12708 -24.08431 -23.27913 -21.95139 -21.25162 -19.32750 -18.53175 -18.22345 -18.11924 -17.23137 -16.92351 -16.62410 -16.58031 -16.00749 -15.81704 -15.55912 -15.22348 -14.93938 -14.48242 -14.32216 -13.98809 -13.91430 -13.49128 -13.14804 -12.96463 -12.84846 -12.70439 -12.55815 -12.51838 -12.28854 -12.16006 -11.74255 -11.68110 -11.31819 -10.89320 -10.61772 -9.85234 -9.17296 -9.09368 -8.20449 -6.31646 0.04822 0.20739 1.42051 1.44782 1.45975 1.53789 1.80145 2.41000 2.65345 3.11894 3.14764 3.25804 3.64779 3.79497 3.95181 4.02984 4.15031 4.32744 4.37440 4.47633 4.50198 4.60825 4.72990 4.88038 4.94056 5.00089 5.08018 5.09148 5.18552 5.21723 5.30386 5.34183 5.48302 5.63799 5.92987 6.02286 6.20332 6.28942 6.56260 6.84558 6.94397 7.38302 8.91051 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.041981 B = 0.002775 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.805967 B =10087.193492 C =10453.161763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.544 5.544 3 C 0.206 3.794 4 C -0.524 4.524 5 H 0.070 0.930 6 C -0.003 4.003 7 N -0.938 5.938 8 Si 0.974 3.026 9 H -0.264 1.264 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.073 3.927 13 C -0.119 4.119 14 C 0.521 3.479 15 O -0.553 6.553 16 N -0.661 5.661 17 C 0.102 3.898 18 C -0.131 4.131 19 C -0.108 4.108 20 C -0.105 4.105 21 C -0.130 4.130 22 C 0.049 3.951 23 F -0.142 7.142 24 H 0.007 0.993 25 H 0.061 0.939 26 H 0.093 0.907 27 H -0.040 1.040 28 H -0.001 1.001 29 H 0.264 0.736 30 H 0.019 0.981 31 H 0.052 0.948 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.427 0.573 35 H 0.133 0.867 36 H 0.151 0.849 37 H 0.168 0.832 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.269 -24.653 9.926 26.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.268 5.268 3 C 0.079 3.921 4 C -0.562 4.562 5 H 0.088 0.912 6 C -0.200 4.200 7 N -0.579 5.579 8 Si 0.798 3.202 9 H -0.189 1.189 10 H -0.211 1.211 11 H -0.191 1.191 12 C -0.056 4.056 13 C -0.159 4.159 14 C 0.310 3.690 15 O -0.430 6.430 16 N -0.307 5.307 17 C 0.007 3.993 18 C -0.151 4.151 19 C -0.127 4.127 20 C -0.124 4.124 21 C -0.149 4.149 22 C 0.028 3.972 23 F -0.121 7.121 24 H 0.026 0.974 25 H 0.079 0.921 26 H 0.111 0.889 27 H -0.023 1.023 28 H 0.017 0.983 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.266 0.734 35 H 0.151 0.849 36 H 0.169 0.831 37 H 0.185 0.815 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.639 -24.275 10.037 26.401 hybrid contribution -0.345 1.131 -0.423 1.256 sum -2.984 -23.145 9.614 25.239 Atomic orbital electron populations 1.22352 0.87100 1.02121 0.99865 1.62046 1.08650 1.15158 1.40975 1.19396 0.93531 0.83919 0.95241 1.21453 1.35020 0.97501 1.02214 0.91210 1.26005 0.94962 0.98137 1.00931 1.70105 1.39361 1.11943 1.36459 0.85363 0.78943 0.77004 0.78862 1.18923 1.21073 1.19119 1.21692 0.99469 0.92958 0.91447 1.21569 1.04383 0.93189 0.96760 1.21183 0.78161 0.81701 0.87908 1.90677 1.40558 1.70267 1.41531 1.43413 1.60366 1.07946 1.18963 1.18054 1.02459 0.90408 0.88413 1.21412 1.01255 1.01574 0.90894 1.21475 0.97696 0.94889 0.98603 1.21410 0.98833 0.94109 0.98024 1.21369 1.00520 1.01995 0.91025 1.17604 1.07389 0.89452 0.82788 1.91465 1.94233 1.81775 1.44636 0.97436 0.92054 0.88902 1.02251 0.98299 0.92682 0.96321 0.92903 0.85861 0.85680 0.73392 0.84918 0.83091 0.81485 0.81880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.23 9.14 127.69 1.17 2.39 16 2 N -0.54 -23.51 4.75 -927.04 -4.41 -27.92 16 3 C 0.21 11.35 4.72 85.56 0.40 11.76 16 4 C -0.52 -29.97 8.46 25.60 0.22 -29.75 16 5 H 0.07 3.82 7.12 -2.91 -0.02 3.80 16 6 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 7 N -0.94 -57.89 13.29 21.45 0.28 -57.60 16 8 Si 0.97 44.43 29.54 68.60 2.03 46.45 16 9 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 12 C 0.07 2.74 4.25 86.30 0.37 3.11 16 13 C -0.12 -3.04 5.63 29.85 0.17 -2.87 16 14 C 0.52 14.11 7.64 87.66 0.67 14.78 16 15 O -0.55 -19.35 13.15 -3.07 -0.04 -19.39 16 16 N -0.66 -14.22 5.31 -303.33 -1.61 -15.83 16 17 C 0.10 2.33 6.44 38.16 0.25 2.58 16 18 C -0.13 -3.05 8.72 22.39 0.20 -2.86 16 19 C -0.11 -1.79 10.04 22.26 0.22 -1.57 16 20 C -0.11 -1.31 10.04 22.29 0.22 -1.09 16 21 C -0.13 -1.86 10.02 22.29 0.22 -1.63 16 22 C 0.05 0.96 7.31 22.48 0.16 1.13 16 23 F -0.14 -2.81 16.81 44.97 0.76 -2.05 16 24 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 25 H 0.06 2.43 6.76 -2.39 -0.02 2.41 16 26 H 0.09 2.49 6.47 -2.39 -0.02 2.48 16 27 H -0.04 -2.43 8.12 -2.39 -0.02 -2.45 16 28 H 0.00 -0.07 7.93 -2.39 -0.02 -0.09 16 29 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 30 H 0.02 0.74 8.08 -2.39 -0.02 0.72 16 31 H 0.05 2.20 7.89 -2.39 -0.02 2.18 16 32 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.13 2.49 6.55 -2.39 -0.02 2.48 16 34 H 0.43 6.60 8.46 -92.71 -0.78 5.82 16 35 H 0.13 3.71 5.79 -2.91 -0.02 3.69 16 36 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.17 0.91 8.06 -2.91 -0.02 0.88 16 38 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -73.19 323.96 2.03 -71.15 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.30 Total: 8.91 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 4.73 Total: -3.73 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -5.73 Total: -101.35 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.04 Total: -19.39 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.76 Total: -2.05 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -73.19 2.03 -71.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177188283.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.163 kcal (2) G-P(sol) polarization free energy of solvation -73.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds