Wall clock time and date at job start Tue Mar 31 2020 02:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46848 * 2 1 4 4 C 1.50698 * 109.47236 * 119.99602 * 2 1 3 5 5 H 1.07997 * 120.00326 * 119.99922 * 4 2 1 6 6 C 1.37880 * 120.00163 * 300.00498 * 4 2 1 7 7 N 1.31513 * 120.00016 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99930 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.47047 * 90.00119 * 8 6 4 10 10 H 1.48493 * 109.47327 * 210.00048 * 8 6 4 11 11 H 1.48498 * 109.47156 * 330.00459 * 8 6 4 12 12 N 1.46496 * 109.47303 * 239.99894 * 2 1 3 13 13 C 1.34783 * 120.00260 * 85.00362 * 12 2 1 14 14 O 1.21611 * 119.99543 * 359.97438 * 13 12 2 15 15 C 1.47365 * 120.00067 * 179.97438 * 13 12 2 16 16 C 1.39854 * 120.09307 * 359.97438 * 15 13 12 17 17 C 1.36536 * 120.07821 * 179.72154 * 16 15 13 18 18 C 1.39297 * 120.26894 * 0.25435 * 17 16 15 19 19 N 1.39054 * 119.90677 * 180.02562 * 18 17 16 20 20 C 1.46492 * 120.00236 * 0.02562 * 19 18 17 21 21 C 1.46505 * 119.99631 * 180.02562 * 19 18 17 22 22 C 1.39073 * 120.18390 * 0.02562 * 18 17 16 23 23 C 1.38008 * 119.91948 * 0.02562 * 22 18 17 24 24 F 1.35099 * 120.13447 * 180.02562 * 23 22 18 25 25 H 1.08996 * 109.47198 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47389 * 300.00252 * 1 2 3 27 27 H 1.09005 * 109.46665 * 60.00037 * 1 2 3 28 28 H 0.97006 * 119.99956 * 179.97438 * 7 6 4 29 29 H 0.96999 * 119.99972 * 264.99300 * 12 2 1 30 30 H 1.08002 * 119.96345 * 0.02562 * 16 15 13 31 31 H 1.08002 * 119.86408 * 180.27367 * 17 16 15 32 32 H 1.08995 * 109.47454 * 59.99277 * 20 19 18 33 33 H 1.08997 * 109.47657 * 179.97438 * 20 19 18 34 34 H 1.09006 * 109.46832 * 299.99939 * 20 19 18 35 35 H 1.08994 * 109.47096 * 90.00124 * 21 19 18 36 36 H 1.09007 * 109.46694 * 209.99990 * 21 19 18 37 37 H 1.08998 * 109.47261 * 330.00069 * 21 19 18 38 38 H 1.08003 * 120.04391 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1372 -0.8594 3.5566 8 14 0.6257 1.2799 2.6541 9 1 -0.8022 0.8744 2.6993 10 1 0.9769 1.9955 3.9069 11 1 0.8489 2.1773 1.4922 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3571 14 8 1.8576 1.1616 -2.4118 15 6 2.6390 -0.7129 -3.5602 16 6 2.9731 -2.0695 -3.4993 17 6 3.4234 -2.7142 -4.6155 18 6 3.5575 -2.0248 -5.8184 19 7 4.0163 -2.6889 -6.9507 20 6 4.3571 -4.1117 -6.8776 21 6 4.1587 -1.9655 -8.2167 22 6 3.2340 -0.6741 -5.8901 23 6 2.7792 -0.0146 -4.7663 24 9 2.4631 1.2973 -4.8311 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 1.9031 -0.5278 4.4376 29 1 2.2492 -1.6317 -1.1525 30 1 2.8702 -2.6092 -2.5694 31 1 3.6762 -3.7630 -4.5656 32 1 3.4778 -4.6810 -6.5766 33 1 4.6947 -4.4552 -7.8555 34 1 5.1523 -4.2577 -6.1465 35 1 5.1607 -1.5418 -8.2824 36 1 3.9996 -2.6529 -9.0477 37 1 3.4215 -1.1639 -8.2621 38 1 3.3392 -0.1416 -6.8238 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179275653.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:00 Heat of formation + Delta-G solvation = -37.582465 kcal Electronic energy + Delta-G solvation = -21557.209030 eV Core-core repulsion = 18121.763296 eV Total energy + Delta-G solvation = -3435.445734 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.61686 -39.92891 -38.66216 -36.13432 -34.89488 -32.40780 -31.24313 -30.59594 -29.22858 -28.38981 -25.66285 -25.10169 -22.50605 -22.33966 -20.82645 -19.53853 -18.28939 -17.29168 -16.68504 -16.13676 -15.82467 -15.67187 -15.21075 -15.13177 -14.75013 -14.62533 -14.14676 -13.91815 -13.29859 -13.04688 -12.87647 -12.83483 -12.68278 -12.42360 -12.25214 -12.16044 -12.09443 -11.70784 -11.22988 -11.19331 -10.75881 -10.13237 -9.95532 -9.65228 -9.17133 -9.09801 -8.87956 -8.70740 -8.10076 -7.56751 -6.16750 -4.18787 1.02758 1.24972 2.70959 3.22553 3.28178 3.39866 3.46100 4.00093 4.08483 4.33513 4.36730 4.53448 4.63273 4.86771 4.92333 4.96215 5.18151 5.18672 5.23965 5.27087 5.32135 5.37068 5.42816 5.77103 6.01945 6.15826 6.25401 6.38461 6.46393 6.62513 6.63449 6.85198 6.93781 7.11606 7.26902 7.36960 7.58583 8.21545 8.59166 8.80647 9.02861 9.44793 10.95397 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.031766 B = 0.003940 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.239544 B = 7103.999819 C = 7777.289506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.237 3.763 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.894 5.894 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.295 1.295 11 H -0.261 1.261 12 N -0.697 5.697 13 C 0.550 3.450 14 O -0.548 6.548 15 C -0.222 4.222 16 C -0.009 4.009 17 C -0.213 4.213 18 C 0.258 3.742 19 N -0.630 5.630 20 C 0.092 3.908 21 C 0.088 3.912 22 C -0.253 4.253 23 C 0.205 3.795 24 F -0.115 7.115 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.267 0.733 29 H 0.393 0.607 30 H 0.138 0.862 31 H 0.131 0.869 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.904 -7.289 -22.806 24.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.134 3.866 3 H 0.067 0.933 4 C -0.571 4.571 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.531 5.531 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.346 5.346 13 C 0.336 3.664 14 O -0.428 6.428 15 C -0.229 4.229 16 C -0.028 4.028 17 C -0.236 4.236 18 C 0.153 3.847 19 N -0.340 5.340 20 C -0.050 4.050 21 C -0.055 4.055 22 C -0.276 4.276 23 C 0.183 3.817 24 F -0.093 7.093 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.227 0.773 30 H 0.156 0.844 31 H 0.149 0.851 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.757 -6.506 -22.781 23.988 hybrid contribution -0.493 0.419 0.224 0.685 sum 3.264 -6.087 -22.557 23.590 Atomic orbital electron populations 1.22448 0.99304 1.00835 0.99328 1.19104 0.90142 0.94759 0.82645 0.93275 1.21044 1.33163 1.14389 0.88545 0.90197 1.24823 0.95501 0.96702 0.95506 1.69870 1.45037 1.40151 0.98013 0.86876 0.80507 0.83686 0.77449 1.20310 1.22200 1.18562 1.46066 1.65293 1.13667 1.09578 1.17913 0.78677 0.86669 0.83133 1.90777 1.51467 1.15432 1.85133 1.20042 1.12897 0.95418 0.94496 1.20761 0.91650 0.92135 0.98302 1.20346 1.10684 1.00844 0.91675 1.17585 0.89961 0.90342 0.86769 1.46275 1.70214 1.09633 1.07857 1.21690 1.00549 0.80165 1.02640 1.21759 1.01659 0.97467 0.84622 1.20449 1.13939 0.94266 0.98965 1.17342 0.93587 0.78107 0.92616 1.91580 1.89270 1.31702 1.96739 0.92828 0.93477 0.94467 0.92332 0.77293 0.84406 0.85096 0.92296 0.90711 0.92239 0.92965 0.91263 0.90979 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 8.96 37.16 0.33 -3.41 16 2 C 0.24 5.89 2.15 -69.09 -0.15 5.74 16 3 H 0.05 1.35 6.63 -51.92 -0.34 1.01 16 4 C -0.53 -14.70 9.31 -34.44 -0.32 -15.02 16 5 H 0.08 2.29 7.98 -52.49 -0.42 1.87 16 6 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 7 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 8 Si 0.89 22.26 24.37 -169.99 -4.14 18.12 16 9 H -0.28 -6.71 6.87 56.52 0.39 -6.32 16 10 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.26 -6.58 6.53 56.52 0.37 -6.21 16 12 N -0.70 -14.73 5.02 -56.03 -0.28 -15.01 16 13 C 0.55 11.63 7.72 -12.54 -0.10 11.54 16 14 O -0.55 -13.68 14.99 5.27 0.08 -13.60 16 15 C -0.22 -3.76 5.88 -104.89 -0.62 -4.37 16 16 C -0.01 -0.12 9.48 -39.59 -0.38 -0.49 16 17 C -0.21 -2.35 9.23 -39.80 -0.37 -2.71 16 18 C 0.26 2.85 6.55 -83.88 -0.55 2.30 16 19 N -0.63 -5.19 3.39 -187.58 -0.64 -5.82 16 20 C 0.09 0.52 9.38 59.84 0.56 1.08 16 21 C 0.09 0.52 10.14 59.85 0.61 1.13 16 22 C -0.25 -3.16 9.17 -39.36 -0.36 -3.52 16 23 C 0.20 3.31 7.28 -38.98 -0.28 3.02 16 24 F -0.11 -2.12 15.54 2.25 0.04 -2.09 16 25 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 29 H 0.39 7.14 6.55 -40.82 -0.27 6.88 16 30 H 0.14 1.60 6.39 -52.49 -0.34 1.26 16 31 H 0.13 1.11 6.68 -52.49 -0.35 0.75 16 32 H 0.06 0.31 7.93 -51.93 -0.41 -0.10 16 33 H 0.07 0.27 7.79 -51.93 -0.40 -0.13 16 34 H 0.06 0.33 7.93 -51.93 -0.41 -0.09 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.28 7.92 -51.93 -0.41 -0.13 16 37 H 0.07 0.44 6.17 -51.93 -0.32 0.12 16 38 H 0.14 1.42 6.11 -52.48 -0.32 1.10 16 LS Contribution 312.60 15.07 4.71 4.71 Total: -1.00 -34.29 312.60 -5.79 -40.08 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -4.62 Total: 2.18 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -1.71 Total: -2.60 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.14 Total: -46.80 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.08 Total: -13.60 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.14 Total: 18.12 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.29 -5.79 -40.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179275653.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.502 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds