Wall clock time and date at job start Tue Mar 31 2020 02:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47294 * 60.00559 * 8 6 4 10 10 H 1.48503 * 109.46954 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47431 * 300.00157 * 8 6 4 12 12 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 13 13 C 1.34778 * 119.99771 * 274.99826 * 12 2 1 14 14 O 1.21612 * 120.00049 * 0.02562 * 13 12 2 15 15 C 1.47373 * 119.99832 * 180.02562 * 13 12 2 16 16 C 1.39853 * 120.09475 * 359.72732 * 15 13 12 17 17 C 1.36537 * 120.07963 * 179.73628 * 16 15 13 18 18 C 1.39301 * 120.26652 * 0.51692 * 17 16 15 19 19 N 1.39049 * 119.90409 * 179.74147 * 18 17 16 20 20 C 1.46499 * 119.99735 * 180.02562 * 19 18 17 21 21 C 1.46499 * 120.00152 * 0.02562 * 19 18 17 22 22 C 1.39077 * 120.18539 * 359.76120 * 18 17 16 23 23 C 1.38006 * 119.91531 * 359.97438 * 22 18 17 24 24 F 1.35102 * 120.13006 * 179.97438 * 23 22 18 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 29 29 H 0.96998 * 120.00630 * 95.00428 * 12 2 1 30 30 H 1.08003 * 119.95988 * 359.97438 * 16 15 13 31 31 H 1.07993 * 119.86418 * 180.25764 * 17 16 15 32 32 H 1.08997 * 109.47760 * 89.99667 * 20 19 18 33 33 H 1.09005 * 109.46960 * 209.99568 * 20 19 18 34 34 H 1.08994 * 109.47250 * 329.99065 * 20 19 18 35 35 H 1.08992 * 109.47460 * 90.00606 * 21 19 18 36 36 H 1.09008 * 109.47078 * 210.00229 * 21 19 18 37 37 H 1.08996 * 109.47150 * 330.00041 * 21 19 18 38 38 H 1.07997 * 120.03819 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8271 -0.4199 -5.2204 11 1 3.8066 -1.1210 -4.0081 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8573 1.1616 2.4118 15 6 2.6387 -0.7129 3.5603 16 6 2.9669 -2.0710 3.5010 17 6 3.4275 -2.7130 4.6146 18 6 3.5630 -2.0231 5.8172 19 7 4.0277 -2.6856 6.9479 20 6 4.1704 -1.9622 8.2138 21 6 4.3746 -4.1070 6.8733 22 6 3.2343 -0.6737 5.8900 23 6 2.7732 -0.0160 4.7678 24 9 2.4522 1.2947 4.8339 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7096 1.1617 -3.4844 29 1 2.2490 -1.6318 1.1527 30 1 2.8595 -2.6118 2.5724 31 1 3.6839 -3.7608 4.5638 32 1 3.2409 -2.0313 8.7787 33 1 4.9817 -2.4018 8.7940 34 1 4.3951 -0.9152 8.0106 35 1 5.4256 -4.2109 6.6040 36 1 4.1999 -4.5749 7.8422 37 1 3.7564 -4.5927 6.1185 38 1 3.3399 -0.1412 6.8237 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179275656.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:03 Heat of formation + Delta-G solvation = -43.864328 kcal Electronic energy + Delta-G solvation = -21492.517698 eV Core-core repulsion = 18056.799562 eV Total energy + Delta-G solvation = -3435.718136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.54124 -39.86465 -38.49847 -36.05044 -34.68119 -32.39539 -31.12667 -30.37356 -28.54944 -28.31535 -25.55030 -25.17768 -22.40613 -22.26505 -20.74565 -19.36496 -18.25503 -17.16794 -16.64736 -15.99056 -15.62113 -15.53684 -15.15015 -15.03921 -14.68923 -14.48513 -14.09924 -13.77482 -13.27586 -12.98553 -12.76956 -12.65259 -12.46182 -12.30915 -12.16011 -12.03361 -11.60112 -11.13908 -11.03823 -10.91810 -10.68003 -10.27998 -10.17808 -9.89810 -9.00440 -8.96024 -8.83081 -8.49491 -7.86921 -7.48820 -6.07106 -4.16391 1.09897 1.29742 2.74635 3.28678 3.31495 3.33882 3.35151 4.13613 4.21151 4.37569 4.43993 4.57815 4.69396 4.87595 4.92507 5.01533 5.20277 5.24785 5.28836 5.33878 5.37857 5.42741 5.50171 5.81005 6.06150 6.25386 6.31881 6.67754 6.88929 6.90781 7.05294 7.16657 7.22825 7.54585 7.63636 7.75977 7.98875 8.21227 8.74172 8.84493 9.22062 9.51171 10.98944 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027413 B = 0.003854 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.169627 B = 7263.450351 C = 8045.023811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.705 5.705 13 C 0.546 3.454 14 O -0.547 6.547 15 C -0.220 4.220 16 C -0.010 4.010 17 C -0.217 4.217 18 C 0.256 3.744 19 N -0.631 5.631 20 C 0.089 3.911 21 C 0.090 3.910 22 C -0.253 4.253 23 C 0.204 3.796 24 F -0.114 7.114 25 H 0.026 0.974 26 H 0.015 0.985 27 H 0.090 0.910 28 H 0.265 0.735 29 H 0.386 0.614 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.578 -10.817 19.658 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.353 5.353 13 C 0.332 3.668 14 O -0.426 6.426 15 C -0.227 4.227 16 C -0.030 4.030 17 C -0.239 4.239 18 C 0.152 3.848 19 N -0.341 5.341 20 C -0.054 4.054 21 C -0.053 4.053 22 C -0.276 4.276 23 C 0.183 3.817 24 F -0.092 7.092 25 H 0.045 0.955 26 H 0.034 0.966 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.219 0.781 30 H 0.155 0.845 31 H 0.149 0.851 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.327 -9.888 19.678 22.914 hybrid contribution 0.387 -0.754 -0.782 1.153 sum 6.714 -10.642 18.897 22.703 Atomic orbital electron populations 1.22077 0.98460 0.99085 1.00932 1.18742 0.91029 0.94054 0.79823 0.93273 1.21186 1.32456 1.13217 0.90357 0.92137 1.24889 0.94840 0.94969 0.99020 1.69900 1.35842 1.22408 1.23932 0.86507 0.79157 0.79559 0.81843 1.20174 1.21161 1.20184 1.46412 1.65183 1.13365 1.10324 1.17892 0.78964 0.86765 0.83155 1.90782 1.51376 1.15421 1.85058 1.20160 1.12443 0.95382 0.94668 1.20743 0.91827 0.92206 0.98213 1.20370 1.10903 1.00769 0.91851 1.17586 0.90094 0.90363 0.86749 1.46248 1.70151 1.09695 1.07965 1.21716 1.01242 0.97689 0.84797 1.21712 1.00439 0.80381 1.02737 1.20444 1.13795 0.94228 0.99159 1.17361 0.93548 0.78206 0.92603 1.91583 1.89144 1.31791 1.96722 0.95499 0.96571 0.89161 0.92542 0.78071 0.84546 0.85080 0.92999 0.91317 0.90947 0.92987 0.91373 0.90801 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.26 37.16 0.34 -3.46 16 2 C 0.27 7.03 2.56 -69.08 -0.18 6.85 16 3 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 4 C -0.53 -14.44 8.73 -34.44 -0.30 -14.74 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.39 11.32 55.43 0.63 -24.76 16 8 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.70 -15.60 5.02 -56.02 -0.28 -15.88 16 13 C 0.55 12.20 7.72 -12.54 -0.10 12.10 16 14 O -0.55 -14.47 14.99 5.27 0.08 -14.39 16 15 C -0.22 -3.89 5.88 -104.89 -0.62 -4.51 16 16 C -0.01 -0.14 9.48 -39.59 -0.38 -0.52 16 17 C -0.22 -2.46 9.13 -39.80 -0.36 -2.82 16 18 C 0.26 2.93 6.55 -83.88 -0.55 2.39 16 19 N -0.63 -5.42 3.39 -187.58 -0.64 -6.06 16 20 C 0.09 0.56 10.17 59.85 0.61 1.17 16 21 C 0.09 0.53 10.17 59.85 0.61 1.14 16 22 C -0.25 -3.30 9.17 -39.36 -0.36 -3.66 16 23 C 0.20 3.45 7.28 -38.98 -0.28 3.16 16 24 F -0.11 -2.21 15.54 2.25 0.04 -2.18 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.39 7.25 6.55 -40.82 -0.27 6.98 16 30 H 0.14 1.63 6.39 -52.48 -0.34 1.29 16 31 H 0.13 1.12 6.10 -52.49 -0.32 0.80 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.31 8.07 -51.93 -0.42 -0.11 16 34 H 0.07 0.47 6.17 -51.93 -0.32 0.15 16 35 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.29 8.07 -51.92 -0.42 -0.13 16 37 H 0.07 0.41 6.17 -51.93 -0.32 0.09 16 38 H 0.14 1.48 6.11 -52.49 -0.32 1.16 16 LS Contribution 318.43 15.07 4.80 4.80 Total: -1.00 -33.58 318.43 -6.72 -40.30 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.66 Total: 3.51 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -1.66 Total: -1.19 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -0.29 Total: -46.70 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.08 Total: -14.39 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.58 -6.72 -40.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179275656.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.565 kcal (2) G-P(sol) polarization free energy of solvation -33.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds