Wall clock time and date at job start Tue Mar 31 2020 02:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47111 * 2 1 4 4 C 1.50696 * 109.47261 * 119.99824 * 2 1 3 5 5 H 1.08003 * 119.99884 * 120.00286 * 4 2 1 6 6 C 1.37876 * 120.00265 * 300.00114 * 4 2 1 7 7 N 1.31509 * 119.99771 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47374 * 180.02562 * 8 6 4 10 10 H 1.48506 * 109.47175 * 300.00057 * 8 6 4 11 11 H 1.48498 * 109.47132 * 59.99985 * 8 6 4 12 12 N 1.46508 * 109.47233 * 240.00107 * 2 1 3 13 13 C 1.46497 * 119.99750 * 299.99886 * 12 2 1 14 14 C 1.34774 * 119.99725 * 119.99775 * 12 2 1 15 15 O 1.21585 * 120.00533 * 4.11493 * 14 12 2 16 16 N 1.34777 * 119.99546 * 184.11689 * 14 12 2 17 17 C 1.46493 * 120.00281 * 15.41270 * 16 14 12 18 18 C 1.40063 * 119.99901 * 195.41891 * 16 14 12 19 19 C 1.38847 * 120.04303 * 355.96303 * 18 16 14 20 20 C 1.38118 * 119.95311 * 179.76892 * 19 18 16 21 21 C 1.38465 * 120.04530 * 0.48509 * 20 19 18 22 22 F 1.35105 * 119.95862 * 179.74754 * 21 20 19 23 23 C 1.38474 * 120.09044 * 359.77114 * 21 20 19 24 24 C 1.38117 * 120.04064 * 359.97438 * 23 21 20 25 25 H 1.09004 * 109.46733 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47471 * 299.99490 * 1 2 3 27 27 H 1.09003 * 109.47415 * 60.00617 * 1 2 3 28 28 H 0.96999 * 120.00424 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47106 * 103.34214 * 13 12 2 30 30 H 1.09003 * 109.46844 * 223.34399 * 13 12 2 31 31 H 1.09001 * 109.47245 * 343.34265 * 13 12 2 32 32 H 1.08999 * 109.47442 * 35.30804 * 17 16 14 33 33 H 1.09001 * 109.47196 * 155.31096 * 17 16 14 34 34 H 1.09007 * 109.47328 * 275.30741 * 17 16 14 35 35 H 1.08001 * 120.01995 * 359.97438 * 19 18 16 36 36 H 1.07998 * 119.97560 * 180.23209 * 20 19 18 37 37 H 1.07997 * 119.98087 * 179.97438 * 23 21 20 38 38 H 1.07998 * 120.02121 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 1.8260 -0.4206 5.2204 10 1 1.8259 -2.5202 4.0077 11 1 3.8064 -1.1208 4.0081 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0355 -2.0834 15 8 3.1487 1.1045 -1.8547 16 7 3.1738 -0.6442 -3.2240 17 6 2.4924 -1.8632 -3.6665 18 6 4.2211 -0.1113 -3.9863 19 6 4.8118 1.0885 -3.6132 20 6 5.8476 1.6099 -4.3636 21 6 6.2901 0.9420 -5.4929 22 9 7.3000 1.4562 -6.2285 23 6 5.6987 -0.2521 -5.8697 24 6 4.6663 -0.7794 -5.1190 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 0.7087 1.1613 3.4843 29 1 0.8846 -2.1504 -2.1874 30 1 2.5446 -2.6383 -1.7692 31 1 1.3009 -2.5344 -0.5000 32 1 1.4352 -1.8027 -3.4082 33 1 2.5973 -1.9665 -4.7465 34 1 2.9379 -2.7277 -3.1739 35 1 4.4639 1.6120 -2.7350 36 1 6.3098 2.5412 -4.0716 37 1 6.0450 -0.7713 -6.7511 38 1 4.2050 -1.7105 -5.4134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190621613.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:14 Heat of formation + Delta-G solvation = -5.725090 kcal Electronic energy + Delta-G solvation = -22123.140777 eV Core-core repulsion = 18689.076482 eV Total energy + Delta-G solvation = -3434.064295 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.77468 -42.12906 -39.63709 -37.39091 -36.83972 -34.67841 -32.08423 -31.71627 -29.87367 -29.23294 -27.28922 -26.50354 -24.43466 -23.58874 -22.30315 -20.76377 -18.77136 -18.63588 -18.29118 -18.05466 -17.35160 -16.85101 -16.68532 -16.47206 -16.01881 -15.44710 -15.15324 -14.73693 -14.52626 -14.42320 -14.23714 -14.08187 -13.75818 -13.61967 -13.53640 -13.06817 -12.91778 -12.68947 -12.57664 -12.23398 -12.19276 -12.03362 -11.63092 -11.23822 -10.98331 -10.58439 -10.42672 -10.06098 -9.47709 -8.61341 -8.13847 -6.30275 0.18888 0.30796 1.41887 1.44117 1.50071 1.55554 1.99239 2.41394 2.72422 2.90608 3.14285 3.39309 3.77851 3.95543 4.04026 4.20417 4.27343 4.38322 4.53933 4.61315 4.67548 4.78674 4.85979 4.91295 4.98442 5.05323 5.11612 5.15019 5.19784 5.34302 5.45387 5.58511 5.60487 5.70190 5.95476 6.10102 6.12278 6.18427 6.76797 6.97616 7.35451 7.55063 8.89906 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026322 B = 0.004261 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.484637 B = 6570.005492 C = 6970.800225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.278 3.722 3 H 0.010 0.990 4 C -0.538 4.538 5 H 0.059 0.941 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.963 3.037 9 H -0.284 1.284 10 H -0.261 1.261 11 H -0.280 1.280 12 N -0.605 5.605 13 C 0.059 3.941 14 C 0.690 3.310 15 O -0.615 6.615 16 N -0.570 5.570 17 C 0.039 3.961 18 C 0.159 3.841 19 C -0.175 4.175 20 C -0.132 4.132 21 C 0.044 3.956 22 F -0.150 7.150 23 C -0.114 4.114 24 C -0.130 4.130 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.020 0.980 28 H 0.265 0.735 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.156 0.844 36 H 0.137 0.863 37 H 0.170 0.830 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.751 -9.300 -16.182 19.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.175 3.825 3 H 0.028 0.972 4 C -0.576 4.576 5 H 0.078 0.922 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.788 3.212 9 H -0.210 1.210 10 H -0.186 1.186 11 H -0.206 1.206 12 N -0.338 5.338 13 C -0.082 4.082 14 C 0.394 3.606 15 O -0.497 6.497 16 N -0.295 5.295 17 C -0.100 4.100 18 C 0.063 3.937 19 C -0.195 4.195 20 C -0.152 4.152 21 C 0.023 3.977 22 F -0.129 7.129 23 C -0.133 4.133 24 C -0.151 4.151 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.173 0.827 36 H 0.155 0.845 37 H 0.188 0.812 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.737 -8.652 -15.843 18.434 hybrid contribution 0.439 0.399 1.164 1.306 sum 4.176 -8.253 -14.679 17.350 Atomic orbital electron populations 1.21893 0.96842 1.00291 0.99992 1.18502 0.91515 0.91966 0.80477 0.97178 1.21524 1.31928 1.13117 0.91078 0.92245 1.25684 0.95054 0.95620 1.01873 1.70003 1.37185 1.23796 1.24508 0.85537 0.78250 0.79098 0.78280 1.20964 1.18561 1.20596 1.47500 1.51147 1.13229 1.21968 1.22817 1.01700 0.80576 1.03080 1.16342 0.79761 0.84013 0.80524 1.90526 1.60795 1.19507 1.78830 1.44624 1.34615 1.29001 1.21258 1.23238 0.99072 0.84733 1.02956 1.18115 0.89149 0.93729 0.92713 1.22394 0.97247 0.96990 1.02859 1.21188 0.97812 1.01346 0.94821 1.17847 0.90467 0.96147 0.93202 1.91450 1.58171 1.87041 1.76203 1.21188 0.96354 0.94110 1.01625 1.20933 0.98656 1.02112 0.93371 0.93192 0.91316 0.96109 0.92618 0.89489 0.89199 0.91225 0.88249 0.87624 0.89055 0.82735 0.84534 0.81220 0.80827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.13 8.97 71.98 0.65 -5.49 16 2 C 0.28 14.15 2.60 44.24 0.12 14.27 16 3 H 0.01 0.63 6.91 -2.39 -0.02 0.61 16 4 C -0.54 -28.73 7.95 25.60 0.20 -28.52 16 5 H 0.06 3.09 7.56 -2.91 -0.02 3.07 16 6 C 0.02 0.95 5.30 84.66 0.45 1.39 16 7 N -0.92 -52.12 11.32 21.45 0.24 -51.88 16 8 Si 0.96 42.53 29.54 68.60 2.03 44.56 16 9 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 N -0.61 -24.84 2.75 -844.84 -2.33 -27.17 16 13 C 0.06 1.69 7.60 127.77 0.97 2.66 16 14 C 0.69 28.86 7.96 179.06 1.43 30.28 16 15 O -0.61 -31.21 12.23 -3.98 -0.05 -31.26 16 16 N -0.57 -17.45 3.10 -671.49 -2.08 -19.53 16 17 C 0.04 0.70 8.14 127.77 1.04 1.74 16 18 C 0.16 4.78 6.51 38.11 0.25 5.02 16 19 C -0.17 -6.14 9.06 22.39 0.20 -5.94 16 20 C -0.13 -3.96 10.02 22.30 0.22 -3.74 16 21 C 0.04 1.13 7.30 22.38 0.16 1.30 16 22 F -0.15 -3.89 17.27 44.97 0.78 -3.11 16 23 C -0.11 -2.29 10.02 22.30 0.22 -2.07 16 24 C -0.13 -2.67 9.19 22.38 0.21 -2.47 16 25 H 0.05 2.08 7.49 -2.39 -0.02 2.06 16 26 H 0.07 3.60 6.07 -2.39 -0.01 3.58 16 27 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.09 1.86 5.74 -2.39 -0.01 1.85 16 30 H 0.09 2.07 5.21 -2.39 -0.01 2.06 16 31 H 0.07 2.20 7.04 -2.39 -0.02 2.18 16 32 H 0.10 1.73 4.93 -2.39 -0.01 1.72 16 33 H 0.11 1.18 6.07 -2.39 -0.01 1.16 16 34 H 0.09 1.30 6.00 -2.38 -0.01 1.29 16 35 H 0.16 6.75 4.59 -52.34 -0.24 6.51 16 36 H 0.14 3.78 8.06 -2.91 -0.02 3.75 16 37 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 38 H 0.17 2.11 6.13 -2.91 -0.02 2.09 16 Total: -1.00 -70.51 304.42 5.58 -64.93 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.87 Total: 15.02 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 6.12 Total: 8.44 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -4.16 Total: -98.58 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.05 Total: -31.26 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.78 Total: -3.11 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -70.51 5.58 -64.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190621613.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.201 kcal (2) G-P(sol) polarization free energy of solvation -70.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds