Wall clock time and date at job start Tue Mar 31 2020 02:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47487 * 2 1 4 4 C 1.46496 * 120.00190 * 270.00535 * 3 2 1 5 5 C 1.50705 * 109.46925 * 269.99545 * 4 3 2 6 6 H 1.08002 * 119.99773 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00033 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99938 * 180.02562 * 7 5 4 9 9 Si 1.86808 * 119.99934 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.46677 * 90.00515 * 9 7 5 11 11 H 1.48498 * 109.46805 * 210.00216 * 9 7 5 12 12 H 1.48499 * 109.47020 * 330.00747 * 9 7 5 13 13 C 1.34782 * 119.99783 * 89.99746 * 3 2 1 14 14 O 1.21585 * 119.99815 * 180.02562 * 13 3 2 15 15 N 1.34774 * 119.99840 * 0.02562 * 13 3 2 16 16 C 1.39939 * 120.00122 * 184.46864 * 15 13 3 17 17 C 1.38848 * 120.05756 * 325.28186 * 16 15 13 18 18 C 1.38312 * 119.90677 * 180.02562 * 17 16 15 19 19 F 1.35101 * 119.99002 * 179.97438 * 18 17 16 20 20 C 1.38538 * 120.01971 * 359.97328 * 18 17 16 21 21 C 1.38225 * 120.11120 * 0.27370 * 20 18 17 22 22 C 1.38145 * 120.09620 * 359.49627 * 21 20 18 23 23 C 1.50697 * 120.00985 * 180.24975 * 22 21 20 24 24 H 1.08993 * 109.47152 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47055 * 299.99940 * 1 2 3 26 26 H 1.09004 * 109.46705 * 59.99632 * 1 2 3 27 27 H 1.09004 * 109.47055 * 240.00060 * 2 1 3 28 28 H 1.08998 * 109.47010 * 120.00110 * 2 1 3 29 29 H 1.08998 * 109.47431 * 29.99757 * 4 3 2 30 30 H 1.09002 * 109.47027 * 150.00056 * 4 3 2 31 31 H 0.97001 * 120.00210 * 180.02562 * 8 7 5 32 32 H 0.96998 * 120.00354 * 4.47609 * 15 13 3 33 33 H 1.07993 * 120.04373 * 0.03200 * 17 16 15 34 34 H 1.08000 * 119.94046 * 180.02562 * 20 18 17 35 35 H 1.07999 * 119.94666 * 179.74413 * 21 20 18 36 36 H 1.09002 * 109.46797 * 270.23172 * 23 22 21 37 37 H 1.08993 * 109.47007 * 30.23477 * 23 22 21 38 38 H 1.09005 * 109.46684 * 150.23789 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1495 2.3905 -2.8774 8 7 5.3913 2.1834 -3.2573 9 14 3.0131 3.4361 -3.9286 10 1 3.1159 4.8562 -3.5067 11 1 3.4067 3.3139 -5.3552 12 1 1.6135 2.9695 -3.7594 13 6 2.2430 2.0165 1.1673 14 8 2.6480 3.1630 1.1673 15 7 2.0188 1.3810 2.3344 16 6 2.1619 2.0690 3.5445 17 6 3.1399 3.0455 3.6779 18 6 3.2789 3.7232 4.8756 19 9 4.2303 4.6733 5.0074 20 6 2.4429 3.4281 5.9401 21 6 1.4723 2.4525 5.8098 22 6 1.3262 1.7760 4.6142 23 6 0.2637 0.7168 4.4726 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5817 1.6878 -2.0283 30 1 2.0956 3.1411 -1.1382 31 1 5.7177 2.5746 -4.0828 32 1 1.7583 0.4466 2.3357 33 1 3.7910 3.2755 2.8476 34 1 2.5523 3.9583 6.8745 35 1 0.8247 2.2217 6.6427 36 1 0.6738 -0.2503 4.7639 37 1 -0.5815 0.9617 5.1156 38 1 -0.0693 0.6727 3.4356 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266942824.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:42 Heat of formation + Delta-G solvation = -64.117509 kcal Electronic energy + Delta-G solvation = -22005.607766 eV Core-core repulsion = 18569.011386 eV Total energy + Delta-G solvation = -3436.596380 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.91213 -41.88892 -39.85737 -37.17976 -35.94501 -34.74602 -33.26608 -31.89541 -31.12825 -29.27623 -27.40706 -25.10625 -24.43075 -23.56673 -22.40127 -20.93653 -19.62571 -19.14719 -18.60237 -17.46511 -17.26387 -16.67652 -16.57943 -16.44593 -16.05897 -15.55897 -15.39079 -14.85654 -14.66638 -14.60824 -14.45932 -14.28860 -13.84815 -13.48227 -13.20079 -13.00594 -12.81883 -12.63845 -12.61035 -12.45802 -12.38377 -12.07468 -11.95252 -11.75880 -11.42883 -11.02321 -10.84370 -9.74452 -9.53588 -9.03503 -8.35299 -6.40620 0.11952 0.24178 1.31060 1.36567 1.44004 1.60470 2.06494 2.29835 2.64796 2.86233 2.99989 3.34876 3.81697 3.96390 4.01080 4.08578 4.24473 4.33722 4.46425 4.48467 4.72256 4.78682 4.82345 4.90237 4.96215 4.97501 5.02944 5.08829 5.24140 5.31347 5.35089 5.40620 5.44251 5.48433 5.57944 5.92896 5.99975 6.24237 6.60627 6.93358 7.21060 7.52073 8.81870 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.019015 B = 0.005167 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.203345 B = 5417.320672 C = 6489.699865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.096 3.904 3 N -0.608 5.608 4 C 0.242 3.758 5 C -0.537 4.537 6 H 0.026 0.974 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.948 3.052 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.234 1.234 13 C 0.693 3.307 14 O -0.620 6.620 15 N -0.670 5.670 16 C 0.180 3.820 17 C -0.189 4.189 18 C 0.084 3.916 19 F -0.154 7.154 20 C -0.162 4.162 21 C -0.062 4.062 22 C -0.118 4.118 23 C -0.112 4.112 24 H 0.100 0.900 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.018 0.982 31 H 0.268 0.732 32 H 0.422 0.578 33 H 0.108 0.892 34 H 0.162 0.838 35 H 0.183 0.817 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.951 -6.858 17.961 24.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.026 4.026 3 N -0.341 5.341 4 C 0.119 3.881 5 C -0.576 4.576 6 H 0.045 0.955 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.771 3.229 10 H -0.205 1.205 11 H -0.199 1.199 12 H -0.157 1.157 13 C 0.395 3.605 14 O -0.500 6.500 15 N -0.321 5.321 16 C 0.083 3.917 17 C -0.211 4.211 18 C 0.064 3.936 19 F -0.133 7.133 20 C -0.181 4.181 21 C -0.080 4.080 22 C -0.121 4.121 23 C -0.168 4.168 24 H 0.118 0.882 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.075 0.925 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.263 0.737 33 H 0.126 0.874 34 H 0.180 0.820 35 H 0.200 0.800 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.537 -6.046 17.686 24.305 hybrid contribution 1.015 0.645 -1.166 1.675 sum -14.522 -5.401 16.520 22.649 Atomic orbital electron populations 1.22182 0.93448 1.03979 1.02267 1.21786 0.96002 0.80899 1.03877 1.47245 1.67357 1.15327 1.04208 1.19251 0.94828 0.92795 0.81196 1.21581 0.97163 1.32166 1.06668 0.95549 1.25848 0.96724 0.97135 0.98958 1.70051 1.17502 1.46544 1.24528 0.85719 0.80624 0.78837 0.77770 1.20542 1.19890 1.15679 1.16147 0.78627 0.84353 0.81332 1.90872 1.53163 1.19482 1.86435 1.42549 1.72528 1.14855 1.02184 1.17309 0.94068 0.94450 0.85827 1.21215 1.01243 1.01139 0.97457 1.17812 0.90334 0.90069 0.95371 1.91444 1.62958 1.62509 1.96413 1.21410 0.96880 1.01462 0.98358 1.21168 0.96748 0.92922 0.97151 1.20150 0.97330 1.01803 0.92779 1.20841 0.96156 0.96310 1.03491 0.88157 0.92216 0.93188 0.90101 0.89474 0.92533 0.96429 0.92270 0.73705 0.87436 0.82003 0.80017 0.88896 0.88457 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 10.24 71.98 0.74 -2.49 16 2 C 0.10 2.68 5.93 86.38 0.51 3.19 16 3 N -0.61 -24.67 2.46 -844.19 -2.07 -26.75 16 4 C 0.24 11.84 4.23 85.64 0.36 12.20 16 5 C -0.54 -32.00 9.94 25.60 0.25 -31.74 16 6 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 7 C 0.01 0.68 5.47 84.66 0.46 1.14 16 8 N -0.95 -60.71 13.96 21.45 0.30 -60.41 16 9 Si 0.95 44.86 27.47 68.60 1.88 46.75 16 10 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 12 H -0.23 -9.78 6.54 99.48 0.65 -9.13 16 13 C 0.69 29.50 8.12 179.05 1.45 30.96 16 14 O -0.62 -32.97 13.34 -3.98 -0.05 -33.02 16 15 N -0.67 -20.81 4.62 -317.20 -1.47 -22.28 16 16 C 0.18 5.47 6.29 38.14 0.24 5.71 16 17 C -0.19 -7.05 8.68 22.43 0.19 -6.86 16 18 C 0.08 2.66 7.30 22.36 0.16 2.82 16 19 F -0.15 -5.35 17.27 44.97 0.78 -4.57 16 20 C -0.16 -3.47 10.02 22.34 0.22 -3.25 16 21 C -0.06 -1.02 9.69 22.24 0.22 -0.80 16 22 C -0.12 -2.37 5.90 -19.74 -0.12 -2.49 16 23 C -0.11 -1.29 9.47 71.24 0.67 -0.62 16 24 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.08 2.41 8.07 -2.38 -0.02 2.39 16 28 H 0.09 1.91 6.30 -2.39 -0.02 1.89 16 29 H 0.06 2.49 7.13 -2.39 -0.02 2.48 16 30 H 0.02 0.94 6.85 -2.39 -0.02 0.92 16 31 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 32 H 0.42 9.56 5.54 -92.71 -0.51 9.05 16 33 H 0.11 5.07 6.20 -2.91 -0.02 5.05 16 34 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 35 H 0.18 1.30 8.06 -2.91 -0.02 1.27 16 36 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.10 0.69 8.09 -2.39 -0.02 0.67 16 38 H 0.06 0.81 7.17 -2.38 -0.02 0.79 16 Total: -1.00 -83.14 321.53 5.26 -77.88 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.51 Total: 14.60 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 5.38 Total: 7.79 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -3.24 Total: -109.43 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.05 Total: -33.02 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.78 Total: -4.57 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.75 kcal Total: -83.14 5.26 -77.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266942824.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.763 kcal (2) G-P(sol) polarization free energy of solvation -83.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds