Wall clock time and date at job start Tue Mar 31 2020 01:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46871 * 2 1 4 4 C 1.52995 * 109.46674 * 240.00236 * 2 1 3 5 5 C 1.50700 * 109.47247 * 119.99892 * 2 1 3 6 6 C 1.33636 * 122.74718 * 74.99828 * 5 2 1 7 7 S 1.76195 * 107.92121 * 179.97438 * 6 5 2 8 8 C 1.70969 * 90.28398 * 0.02562 * 7 6 5 9 9 C 1.50710 * 124.91788 * 179.97438 * 8 7 6 10 10 N 1.46497 * 109.47074 * 270.00427 * 9 8 7 11 11 C 1.36932 * 119.99976 * 90.00240 * 10 9 8 12 12 H 1.08004 * 120.00251 * 218.03954 * 11 10 9 13 13 C 1.38817 * 120.00547 * 38.03522 * 11 10 9 14 14 N 1.31618 * 119.99506 * 20.59588 * 13 11 10 15 15 Si 1.86800 * 120.00234 * 200.59891 * 13 11 10 16 16 H 1.48496 * 109.47218 * 89.99874 * 15 13 11 17 17 H 1.48501 * 109.46979 * 209.99971 * 15 13 11 18 18 H 1.48502 * 109.47073 * 329.99915 * 15 13 11 19 19 C 1.46493 * 119.99789 * 269.99408 * 10 9 8 20 20 C 1.53002 * 117.49925 * 193.93672 * 19 10 9 21 21 C 1.53000 * 60.00067 * 252.51383 * 20 19 10 22 22 N 1.29020 * 110.16920 * 359.97438 * 8 7 6 23 23 H 1.09010 * 109.46938 * 300.00142 * 1 2 3 24 24 H 1.09000 * 109.47521 * 59.99994 * 1 2 3 25 25 H 1.09002 * 109.47257 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47096 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47053 * 300.00293 * 3 2 1 28 28 H 1.08993 * 109.47403 * 60.00029 * 3 2 1 29 29 H 1.08999 * 109.47273 * 299.99455 * 4 2 1 30 30 H 1.09001 * 109.47698 * 60.00054 * 4 2 1 31 31 H 1.09007 * 109.46666 * 179.97438 * 4 2 1 32 32 H 1.07997 * 126.03822 * 359.74410 * 6 5 2 33 33 H 1.09000 * 109.46818 * 30.00457 * 9 8 7 34 34 H 1.08993 * 109.47062 * 149.99929 * 9 8 7 35 35 H 0.96999 * 120.00014 * 174.96931 * 14 13 11 36 36 H 1.08997 * 115.55609 * 339.64566 * 19 10 9 37 37 H 1.09003 * 117.49573 * 0.02562 * 20 19 10 38 38 H 1.09004 * 117.50110 * 145.02333 * 20 19 10 39 39 H 1.09004 * 117.49916 * 252.51152 * 21 20 19 40 40 H 1.08998 * 117.52049 * 107.48538 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2305 6 6 1.9991 -2.0398 1.3619 7 16 2.6776 -2.4462 2.9364 8 6 2.9379 -0.7880 3.2616 9 6 3.5437 -0.2423 4.5291 10 7 2.4821 0.0213 5.5036 11 6 2.0986 -0.9584 6.3801 12 1 1.0567 -1.0721 6.6409 13 6 3.0490 -1.8054 6.9336 14 7 4.3151 -1.4468 6.9589 15 14 2.5309 -3.4542 7.6425 16 1 2.5881 -4.4899 6.5798 17 1 3.4490 -3.8281 8.7481 18 1 1.1436 -3.3553 8.1630 19 6 1.8309 1.3330 5.5405 20 6 0.9758 1.6631 6.7656 21 6 0.3059 1.3682 5.4221 22 7 2.5406 -0.0715 2.2649 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6766 -1.7489 -1.2493 30 1 1.6766 -0.2074 -2.1393 31 1 3.1300 -0.7208 -1.2495 32 1 1.6196 -2.7410 0.6334 33 1 4.2422 -0.9707 4.9409 34 1 4.0732 0.6846 4.3089 35 1 4.9682 -2.0043 7.4099 36 1 2.3902 2.1487 5.0822 37 1 0.8982 0.9044 7.5443 38 1 0.9726 2.6961 7.1137 39 1 -0.1381 2.2072 4.8861 40 1 -0.2129 0.4154 5.3163 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267981412.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:05 Heat of formation + Delta-G solvation = 64.455187 kcal Electronic energy + Delta-G solvation = -20353.149016 eV Core-core repulsion = 17488.341143 eV Total energy + Delta-G solvation = -2864.807873 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 5.90 seconds Orbital eigenvalues (eV) -41.00842 -38.84154 -37.01728 -35.39017 -32.97929 -30.73974 -28.79783 -28.10369 -27.50210 -26.08940 -24.45748 -22.98589 -21.77629 -21.42641 -19.78571 -18.55599 -17.91877 -17.26186 -16.50838 -16.40183 -15.75948 -15.67977 -15.02930 -14.81754 -14.74091 -14.19061 -14.17332 -13.50802 -13.14601 -13.05767 -12.98338 -12.90313 -12.75311 -12.60262 -12.51188 -12.34277 -12.22555 -11.96189 -11.82864 -11.73071 -11.54971 -11.48655 -10.99907 -10.52439 -10.35562 -10.14532 -9.47507 -8.54006 -7.95772 -5.54033 -0.01986 0.70329 1.12911 1.41801 1.46523 1.52150 2.02863 2.43331 3.09407 3.25282 3.47252 3.50410 3.93668 4.10393 4.13421 4.26401 4.41390 4.44533 4.47037 4.55143 4.63407 4.74959 4.80638 4.89877 4.90688 4.92403 5.00808 5.04329 5.04637 5.14610 5.22089 5.29330 5.35338 5.46162 5.50808 5.50901 5.60410 5.65219 6.38657 7.03398 7.06955 7.69238 8.24801 9.03906 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018862 B = 0.006480 C = 0.005447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.102447 B = 4320.030654 C = 5139.458959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.005 3.995 3 C -0.121 4.121 4 C -0.132 4.132 5 C 0.068 3.932 6 C -0.279 4.279 7 S 0.086 5.914 8 C 0.057 3.943 9 C 0.219 3.781 10 N -0.547 5.547 11 C -0.263 4.263 12 H 0.051 0.949 13 C -0.015 4.015 14 N -0.908 5.908 15 Si 0.942 3.058 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.272 1.272 19 C 0.108 3.892 20 C -0.183 4.183 21 C -0.205 4.205 22 N -0.490 5.490 23 H 0.035 0.965 24 H 0.085 0.915 25 H 0.058 0.942 26 H 0.042 0.958 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.193 0.807 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.260 0.740 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.884 1.476 -13.838 14.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.002 3.998 3 C -0.179 4.179 4 C -0.189 4.189 5 C -0.065 4.065 6 C -0.418 4.418 7 S 0.341 5.659 8 C -0.223 4.223 9 C 0.089 3.911 10 N -0.264 5.264 11 C -0.393 4.393 12 H 0.068 0.932 13 C -0.214 4.214 14 N -0.551 5.551 15 Si 0.769 3.231 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.197 1.197 19 C 0.000 4.000 20 C -0.222 4.222 21 C -0.245 4.245 22 N -0.206 5.206 23 H 0.055 0.945 24 H 0.104 0.896 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.210 0.790 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.428 0.984 -13.167 13.926 hybrid contribution -0.422 -0.583 0.242 0.759 sum -4.850 0.401 -12.924 13.810 Atomic orbital electron populations 1.21828 0.92678 1.02206 1.02085 1.19272 0.95931 0.95172 0.89423 1.21617 1.00312 0.94367 1.01556 1.21870 1.00773 1.00562 0.95712 1.20657 0.99518 0.90348 0.95963 1.26875 1.13928 0.99969 1.01042 1.84166 1.56903 1.12758 1.12096 1.28735 1.01487 0.92761 0.99323 1.19536 0.90544 0.99610 0.81396 1.43366 1.41507 1.08381 1.33105 1.18943 0.91533 1.08485 1.20315 0.93158 1.25729 0.95572 1.02045 0.98053 1.69953 1.02372 1.38418 1.44328 0.85666 0.78042 0.81282 0.78094 1.20363 1.21251 1.19717 1.21317 0.89616 0.88404 1.00689 1.23076 1.05830 1.01502 0.91791 1.23186 0.98959 1.01180 1.01193 1.66190 1.14673 1.38792 1.00923 0.94535 0.89649 0.92279 0.93915 0.90550 0.93954 0.91710 0.89852 0.93324 0.79020 0.88840 0.92517 0.93073 0.88196 0.90520 0.87703 0.88326 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.43 71.98 0.61 -2.30 16 2 C 0.00 0.13 0.90 -52.93 -0.05 0.08 16 3 C -0.12 -3.07 7.92 71.98 0.57 -2.50 16 4 C -0.13 -2.53 8.13 71.98 0.58 -1.95 16 5 C 0.07 2.26 5.40 41.52 0.22 2.49 16 6 C -0.28 -8.91 10.40 66.78 0.69 -8.22 16 7 S 0.09 3.34 23.18 -56.49 -1.31 2.03 16 8 C 0.06 2.47 6.97 88.52 0.62 3.08 16 9 C 0.22 10.39 5.91 85.64 0.51 10.90 16 10 N -0.55 -26.90 2.76 -682.35 -1.89 -28.78 16 11 C -0.26 -13.83 8.04 84.04 0.68 -13.16 16 12 H 0.05 2.75 7.23 -2.91 -0.02 2.73 16 13 C -0.01 -0.79 4.97 84.86 0.42 -0.36 16 14 N -0.91 -49.98 11.45 21.65 0.25 -49.73 16 15 Si 0.94 42.90 29.60 68.60 2.03 44.93 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 19 C 0.11 4.68 6.61 44.99 0.30 4.98 16 20 C -0.18 -7.24 9.81 30.59 0.30 -6.94 16 21 C -0.20 -8.01 10.09 30.59 0.31 -7.70 16 22 N -0.49 -19.59 9.55 -179.40 -1.71 -21.30 16 23 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 24 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.04 1.25 7.97 -2.39 -0.02 1.23 16 29 H 0.06 1.13 7.15 -2.39 -0.02 1.11 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.19 4.75 7.32 -2.91 -0.02 4.73 16 33 H 0.09 4.89 5.52 -2.39 -0.01 4.87 16 34 H 0.06 2.63 8.04 -2.39 -0.02 2.61 16 35 H 0.26 13.80 8.32 -92.71 -0.77 13.02 16 36 H 0.10 4.10 8.10 -2.39 -0.02 4.08 16 37 H 0.08 3.39 6.95 -2.39 -0.02 3.38 16 38 H 0.10 3.48 8.14 -2.38 -0.02 3.46 16 39 H 0.10 3.32 8.14 -2.38 -0.02 3.30 16 40 H 0.06 2.65 8.01 -2.39 -0.02 2.63 16 Total: -1.00 -58.52 339.34 4.14 -54.38 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 1.01 Total: 20.08 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: 5.76 Total: -21.60 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -3.35 Total: -99.82 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -1.31 Total: 2.03 kcal Total: -58.52 4.14 -54.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267981412.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.838 kcal (2) G-P(sol) polarization free energy of solvation -58.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.90 seconds