Wall clock time and date at job start Tue Mar 31 2020 02:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46897 * 109.47370 * 2 1 4 4 C 1.46895 * 111.00154 * 298.64934 * 3 2 1 5 5 C 1.52998 * 109.47508 * 288.38053 * 4 3 2 6 6 C 1.52999 * 109.47569 * 180.28885 * 5 4 3 7 7 S 1.80995 * 109.47253 * 179.97438 * 6 5 4 8 8 C 1.76205 * 99.99959 * 180.02562 * 7 6 5 9 9 H 1.07996 * 119.99778 * 359.97438 * 8 7 6 10 10 C 1.38796 * 119.99728 * 180.02562 * 8 7 6 11 11 N 1.31631 * 120.00273 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99666 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47276 * 59.99750 * 12 10 8 14 14 H 1.48499 * 109.46933 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47196 * 299.99882 * 12 10 8 16 16 C 1.46901 * 110.99946 * 62.60638 * 3 2 1 17 17 C 1.50698 * 109.47297 * 66.04553 * 16 3 2 18 18 C 1.38653 * 120.79023 * 269.72245 * 17 16 3 19 19 C 1.38204 * 119.16361 * 179.79813 * 18 17 16 20 20 N 1.31876 * 120.76130 * 0.48369 * 19 18 17 21 21 C 1.31872 * 121.72608 * 359.74283 * 20 19 18 22 22 C 1.38199 * 120.76503 * 0.02562 * 21 20 19 23 23 H 1.09002 * 109.46897 * 303.68797 * 1 2 3 24 24 H 1.09005 * 109.47085 * 63.67851 * 1 2 3 25 25 H 1.08999 * 109.47581 * 183.68056 * 1 2 3 26 26 H 1.09005 * 109.47073 * 239.99401 * 2 1 3 27 27 H 1.08997 * 109.47000 * 120.00363 * 2 1 3 28 28 H 1.09006 * 109.47277 * 48.37555 * 4 3 2 29 29 H 1.08999 * 109.47300 * 168.37516 * 4 3 2 30 30 H 1.09007 * 109.46904 * 300.28981 * 5 4 3 31 31 H 1.09002 * 109.47389 * 60.28484 * 5 4 3 32 32 H 1.08998 * 109.46806 * 299.99982 * 6 5 4 33 33 H 1.09003 * 109.46650 * 59.99719 * 6 5 4 34 34 H 0.96998 * 119.99992 * 180.02562 * 11 10 8 35 35 H 1.09000 * 109.46789 * 186.04493 * 16 3 2 36 36 H 1.08998 * 109.46880 * 306.04691 * 16 3 2 37 37 H 1.08003 * 120.41676 * 359.97438 * 18 17 16 38 38 H 1.07998 * 119.61857 * 180.20355 * 19 18 17 39 39 H 1.07999 * 119.61193 * 180.02562 * 21 20 19 40 40 H 1.07997 * 120.42028 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5753 2.1005 -1.2035 5 6 2.3383 1.5742 -2.4207 6 6 1.8807 2.3245 -3.6731 7 16 2.7839 1.7023 -5.1130 8 6 2.0804 2.7111 -6.3748 9 1 1.3247 3.4409 -6.1241 10 6 2.4967 2.5672 -7.6910 11 7 3.4173 1.6774 -7.9966 12 14 1.7503 3.6362 -9.0288 13 1 2.0124 5.0657 -8.7239 14 1 2.3608 3.2896 -10.3374 15 1 0.2849 3.4034 -9.0885 16 6 1.6003 2.0916 1.2177 17 6 2.2745 1.4729 2.4150 18 6 1.6766 0.4303 3.1062 19 6 2.3268 -0.1150 4.1971 20 7 3.4969 0.3517 4.5875 21 6 4.0927 1.3449 3.9571 22 6 3.5049 1.9367 2.8551 23 1 -0.3633 0.5700 0.8551 24 1 -0.3633 0.4557 -0.9212 25 1 -0.3634 -1.0255 0.0660 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.5068 1.9405 -1.3476 29 1 1.7704 3.1663 -1.0853 30 1 3.4073 1.7295 -2.2745 31 1 2.1392 0.5094 -2.5420 32 1 0.8118 2.1692 -3.8194 33 1 2.0799 3.3892 -3.5519 34 1 3.7085 1.5771 -8.9164 35 1 1.8829 3.1417 1.1438 36 1 0.5189 2.0133 1.3289 37 1 0.7163 0.0471 2.7943 38 1 1.8693 -0.9296 4.7389 39 1 5.0511 1.7000 4.3060 40 1 3.9976 2.7500 2.3433 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271020831.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:20 Heat of formation + Delta-G solvation = 25.284104 kcal Electronic energy + Delta-G solvation = -18841.249837 eV Core-core repulsion = 15974.743378 eV Total energy + Delta-G solvation = -2866.506459 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.50897 -38.41278 -33.96647 -32.50671 -32.37866 -31.41634 -30.10409 -27.03519 -25.62962 -24.96938 -23.64837 -23.08115 -21.34809 -19.84668 -17.47164 -16.81134 -16.72046 -16.25962 -15.82510 -15.63486 -14.80503 -14.55894 -14.34478 -13.90949 -13.85900 -13.71838 -13.50941 -12.83642 -12.57471 -12.46734 -12.03056 -11.87971 -11.65240 -11.57843 -11.24770 -11.07100 -11.00656 -10.77964 -10.64926 -10.22870 -9.86250 -9.70931 -9.51292 -9.34018 -9.05033 -8.37207 -8.29233 -6.52255 -6.22361 -3.92648 0.92837 1.01864 3.21011 3.22840 3.27560 3.46343 3.61945 4.00680 4.23053 4.24927 4.40391 4.51109 4.85612 4.89159 4.91651 5.00363 5.13414 5.15177 5.20112 5.27890 5.32008 5.39239 5.43889 5.49975 5.57767 5.68858 5.75996 5.78966 5.82752 5.93103 6.06396 6.10704 6.15393 6.35859 6.48825 6.58616 6.74701 6.96655 7.01013 7.60247 7.76042 8.36520 9.23665 10.85764 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.040359 B = 0.002716 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.614790 B =10308.209688 C =10496.930351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.042 3.958 3 N -0.528 5.528 4 C 0.055 3.945 5 C -0.091 4.091 6 C -0.112 4.112 7 S -0.132 6.132 8 C -0.517 4.517 9 H 0.071 0.929 10 C 0.071 3.929 11 N -0.870 5.870 12 Si 0.918 3.082 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.274 1.274 16 C 0.084 3.916 17 C -0.027 4.027 18 C -0.169 4.169 19 C 0.095 3.905 20 N -0.490 5.490 21 C 0.096 3.904 22 C -0.152 4.152 23 H 0.054 0.946 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.268 0.732 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.131 0.869 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.550 -1.055 22.211 22.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.086 4.086 3 N -0.251 5.251 4 C -0.074 4.074 5 C -0.130 4.130 6 C -0.262 4.262 7 S 0.097 5.903 8 C -0.665 4.665 9 H 0.089 0.911 10 C -0.138 4.138 11 N -0.505 5.505 12 Si 0.744 3.256 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.200 1.200 16 C -0.043 4.043 17 C -0.036 4.036 18 C -0.189 4.189 19 C -0.062 4.062 20 N -0.199 5.199 21 C -0.061 4.061 22 C -0.172 4.172 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.069 0.931 37 H 0.149 0.851 38 H 0.170 0.830 39 H 0.172 0.828 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.718 -2.324 22.682 22.962 hybrid contribution -2.729 1.996 -1.601 3.741 sum -5.446 -0.328 21.081 21.775 Atomic orbital electron populations 1.22448 0.98342 1.02431 1.02153 1.22270 0.92839 0.90201 1.03289 1.62232 1.59552 1.02352 1.00976 1.22281 0.97850 0.97992 0.89246 1.21234 1.00715 0.99826 0.91195 1.23230 1.02453 1.01830 0.98656 1.84649 1.54553 1.52965 0.98177 1.22650 1.26812 1.23636 0.93426 0.91063 1.25012 0.94997 0.95740 0.98038 1.70013 1.28219 1.32764 1.19540 0.86232 0.79244 0.80243 0.79852 1.19939 1.20809 1.19972 1.21137 0.97417 0.98126 0.87665 1.20199 0.94286 0.94324 0.94766 1.22089 1.01738 0.97686 0.97390 1.22706 0.91096 0.98266 0.94137 1.67662 1.09980 1.11589 1.30693 1.22771 0.99266 0.91877 0.92159 1.22072 0.95557 1.01794 0.97800 0.92729 0.91806 0.91940 0.89809 0.90787 0.94046 0.90963 0.90830 0.91706 0.92430 0.92196 0.92253 0.89525 0.93072 0.85120 0.82992 0.82813 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.82 9.22 37.16 0.34 -1.47 16 2 C 0.04 0.45 5.58 -3.83 -0.02 0.43 16 3 N -0.53 -5.99 4.66 -236.08 -1.10 -7.09 16 4 C 0.05 0.70 4.82 -3.83 -0.02 0.68 16 5 C -0.09 -1.46 5.25 -26.73 -0.14 -1.60 16 6 C -0.11 -2.24 5.67 37.16 0.21 -2.03 16 7 S -0.13 -3.45 21.44 -107.50 -2.30 -5.76 16 8 C -0.52 -14.85 9.50 30.94 0.29 -14.55 16 9 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 10 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 11 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 12 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 13 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 16 C 0.08 0.79 4.96 -4.98 -0.02 0.76 16 17 C -0.03 -0.26 4.90 -104.32 -0.51 -0.77 16 18 C -0.17 -1.46 8.09 -39.44 -0.32 -1.78 16 19 C 0.09 0.87 11.18 -17.55 -0.20 0.67 16 20 N -0.49 -5.30 10.36 -13.25 -0.14 -5.44 16 21 C 0.10 0.91 11.18 -17.55 -0.20 0.71 16 22 C -0.15 -1.41 9.82 -39.44 -0.39 -1.80 16 23 H 0.05 0.45 5.71 -51.93 -0.30 0.16 16 24 H 0.06 0.67 6.39 -51.93 -0.33 0.34 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 1.00 6.64 -51.93 -0.35 0.66 16 27 H 0.07 0.76 6.03 -51.93 -0.31 0.45 16 28 H 0.04 0.51 5.89 -51.93 -0.31 0.20 16 29 H 0.07 0.88 7.82 -51.93 -0.41 0.47 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 1.06 6.74 -51.93 -0.35 0.71 16 32 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 33 H 0.06 1.18 8.14 -51.91 -0.42 0.76 16 34 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.09 0.76 7.83 -51.93 -0.41 0.36 16 36 H 0.05 0.44 5.97 -51.93 -0.31 0.13 16 37 H 0.13 0.93 7.55 -52.48 -0.40 0.53 16 38 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 335.64 15.07 5.06 5.06 Total: -1.00 -31.92 335.64 -9.80 -41.73 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.96 Total: -0.83 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -1.06 Total: -18.83 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: -0.50 Total: -37.88 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -2.30 Total: -5.76 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.92 -9.80 -41.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271020831.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.010 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds