Wall clock time and date at job start Tue Mar 31 2020 01:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.47447 * 2 1 4 4 C 1.52995 * 109.47485 * 239.99816 * 2 1 3 5 5 C 1.50707 * 109.47280 * 119.99920 * 2 1 3 6 6 N 1.29028 * 124.91466 * 59.95943 * 5 2 1 7 7 C 1.31779 * 117.12546 * 179.75039 * 6 5 2 8 8 C 1.33644 * 114.49965 * 0.52254 * 7 6 5 9 9 C 1.50694 * 126.04188 * 179.78711 * 8 7 6 10 10 N 1.46499 * 109.47202 * 89.68824 * 9 8 7 11 11 C 1.36935 * 120.00115 * 90.00234 * 10 9 8 12 12 H 1.07994 * 120.00341 * 214.76415 * 11 10 9 13 13 C 1.38812 * 119.99843 * 34.76175 * 11 10 9 14 14 N 1.31622 * 119.99978 * 22.03379 * 13 11 10 15 15 Si 1.86802 * 120.00156 * 202.03433 * 13 11 10 16 16 H 1.48496 * 109.47092 * 270.00491 * 15 13 11 17 17 H 1.48500 * 109.46699 * 30.00002 * 15 13 11 18 18 H 1.48502 * 109.47142 * 149.99863 * 15 13 11 19 19 C 1.46505 * 120.00089 * 270.00116 * 10 9 8 20 20 C 1.52994 * 117.49722 * 192.27923 * 19 10 9 21 21 C 1.53003 * 117.49664 * 123.61977 * 19 10 9 22 22 S 1.70973 * 124.91683 * 239.99972 * 5 2 1 23 23 H 1.09001 * 109.47342 * 299.99819 * 1 2 3 24 24 H 1.08997 * 109.47290 * 59.99872 * 1 2 3 25 25 H 1.08999 * 109.47525 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47179 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.46980 * 300.00317 * 3 2 1 28 28 H 1.09001 * 109.46702 * 59.99790 * 3 2 1 29 29 H 1.08999 * 109.47187 * 300.00124 * 4 2 1 30 30 H 1.09006 * 109.46784 * 59.99904 * 4 2 1 31 31 H 1.09004 * 109.47634 * 179.97438 * 4 2 1 32 32 H 1.07998 * 122.75689 * 180.33049 * 7 6 5 33 33 H 1.09007 * 109.47172 * 329.68953 * 9 8 7 34 34 H 1.08996 * 109.47342 * 209.69429 * 9 8 7 35 35 H 0.97000 * 120.00222 * 180.49949 * 14 13 11 36 36 H 1.08997 * 115.54918 * 337.95685 * 19 10 9 37 37 H 1.08995 * 117.50178 * 0.02562 * 20 19 10 38 38 H 1.09007 * 117.49403 * 145.02296 * 20 19 10 39 39 H 1.08999 * 117.50007 * 214.98135 * 21 19 10 40 40 H 1.09003 * 117.49773 * 0.02562 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2305 6 7 1.7791 -1.9400 1.5285 7 6 2.3028 -2.4082 2.6434 8 6 3.0297 -1.5210 3.3295 9 6 3.7384 -1.7755 4.6348 10 7 5.0958 -2.2575 4.3677 11 6 6.1274 -1.3653 4.2451 12 1 6.9308 -1.5609 3.5504 13 6 6.1405 -0.2095 5.0138 14 7 5.4483 -0.1550 6.1319 15 14 7.1405 1.2684 4.4613 16 1 8.5119 1.1762 5.0234 17 1 7.2138 1.2899 2.9783 18 1 6.4907 2.5138 4.9430 19 6 5.3496 -3.6939 4.2317 20 6 6.8076 -4.1577 4.2418 21 6 6.0074 -4.1756 2.9370 22 16 3.0194 -0.0034 2.4342 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1299 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6766 -0.2074 -2.1392 31 1 3.1300 -0.7209 -1.2494 32 1 2.1542 -3.4245 2.9772 33 1 3.1916 -2.5269 5.2047 34 1 3.7877 -0.8497 5.2080 35 1 5.4516 0.6552 6.6654 36 1 4.6102 -4.3478 4.6941 37 1 7.5779 -3.3942 4.3500 38 1 7.0272 -5.1170 4.7106 39 1 5.7010 -5.1466 2.5478 40 1 6.2516 -3.4237 2.1866 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271134157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:18 Heat of formation + Delta-G solvation = 75.582453 kcal Electronic energy + Delta-G solvation = -20224.019716 eV Core-core repulsion = 17359.694357 eV Total energy + Delta-G solvation = -2864.325359 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 3.81 seconds Orbital eigenvalues (eV) -39.21321 -37.22665 -36.31365 -33.74049 -31.33991 -29.04471 -27.32816 -27.16538 -25.91096 -24.43450 -22.77361 -21.41981 -20.51458 -19.96499 -18.15355 -17.10903 -16.40527 -15.49114 -14.97969 -14.58560 -14.38786 -13.96386 -13.90311 -13.65407 -13.38940 -12.84513 -12.58054 -12.11396 -12.06582 -11.93015 -11.60150 -11.42663 -11.28606 -10.97614 -10.89107 -10.87111 -10.85217 -10.66991 -10.57946 -10.27250 -10.04240 -9.71499 -9.41188 -8.87395 -8.58796 -8.39265 -8.01061 -6.72758 -5.97649 -3.51356 1.50254 2.14961 2.65667 3.26112 3.34775 3.39024 3.55481 4.33657 4.46482 4.87313 4.94446 5.03104 5.17302 5.24157 5.26856 5.61320 5.68044 5.71713 5.82568 5.83485 5.92261 5.95843 5.96120 6.08024 6.10405 6.16418 6.21331 6.28165 6.37447 6.38983 6.44254 6.53657 6.65327 6.90343 6.95804 7.09998 7.39421 7.66748 8.30378 8.45117 8.97211 9.60362 10.14969 11.01225 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.006779 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.045711 B = 4129.602487 C = 4999.680805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.017 3.983 3 C -0.152 4.152 4 C -0.131 4.131 5 C 0.009 3.991 6 N -0.469 5.469 7 C -0.003 4.003 8 C -0.179 4.179 9 C 0.203 3.797 10 N -0.537 5.537 11 C -0.254 4.254 12 H 0.065 0.935 13 C 0.016 3.984 14 N -0.880 5.880 15 Si 0.891 3.109 16 H -0.283 1.283 17 H -0.274 1.274 18 H -0.284 1.284 19 C 0.126 3.874 20 C -0.192 4.192 21 C -0.224 4.224 22 S 0.123 5.877 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.160 0.840 33 H 0.052 0.948 34 H 0.115 0.885 35 H 0.259 0.741 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.098 0.416 -8.755 11.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.013 3.987 3 C -0.210 4.210 4 C -0.190 4.190 5 C -0.268 4.268 6 N -0.183 5.183 7 C -0.153 4.153 8 C -0.304 4.304 9 C 0.074 3.926 10 N -0.252 5.252 11 C -0.384 4.384 12 H 0.082 0.918 13 C -0.185 4.185 14 N -0.522 5.522 15 Si 0.719 3.281 16 H -0.209 1.209 17 H -0.199 1.199 18 H -0.210 1.210 19 C 0.017 3.983 20 C -0.231 4.231 21 C -0.265 4.265 22 S 0.378 5.622 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.177 0.823 33 H 0.070 0.930 34 H 0.132 0.868 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.993 1.245 -8.761 11.279 hybrid contribution 0.571 -0.278 -0.039 0.636 sum -6.423 0.967 -8.800 10.937 Atomic orbital electron populations 1.21792 0.93104 1.02589 1.01397 1.19026 0.95882 0.93724 0.90019 1.21995 1.01885 0.94646 1.02483 1.21805 1.01164 1.00769 0.95265 1.26689 1.03181 0.94673 1.02303 1.66009 1.23140 1.11889 1.17288 1.21396 1.01230 1.00903 0.91805 1.27645 1.02147 0.94544 1.06054 1.19672 0.82690 1.02542 0.87691 1.43381 1.02653 0.98882 1.80250 1.18964 1.02310 1.00324 1.16825 0.91760 1.25092 0.98918 1.00260 0.94266 1.69948 1.43395 1.27598 1.11245 0.86471 0.79971 0.82546 0.79135 1.20942 1.19871 1.20995 1.21126 0.93621 0.86461 0.97118 1.23089 0.97470 1.01436 1.01070 1.23351 1.08805 1.01281 0.93049 1.84054 1.46376 1.16177 1.15609 0.92735 0.92351 0.91773 0.91835 0.91421 0.91930 0.91782 0.92370 0.92662 0.82264 0.92992 0.86808 0.93110 0.89245 0.88282 0.90614 0.90835 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 8.45 37.15 0.31 -1.26 16 2 C 0.02 0.24 0.99 -155.66 -0.15 0.08 16 3 C -0.15 -1.86 7.54 37.16 0.28 -1.58 16 4 C -0.13 -1.68 8.45 37.16 0.31 -1.36 16 5 C 0.01 0.16 5.78 -13.45 -0.08 0.08 16 6 N -0.47 -8.88 10.53 -11.86 -0.12 -9.00 16 7 C 0.00 -0.06 11.25 -19.18 -0.22 -0.27 16 8 C -0.18 -3.71 6.18 -35.92 -0.22 -3.93 16 9 C 0.20 4.56 5.87 -5.20 -0.03 4.52 16 10 N -0.54 -12.72 2.78 -167.03 -0.47 -13.19 16 11 C -0.25 -6.57 8.20 -15.06 -0.12 -6.69 16 12 H 0.06 1.70 7.15 -52.49 -0.38 1.33 16 13 C 0.02 0.41 4.97 -17.43 -0.09 0.32 16 14 N -0.88 -23.77 11.31 55.49 0.63 -23.15 16 15 Si 0.89 20.76 29.61 -169.99 -5.03 15.73 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.13 2.63 6.61 -67.93 -0.45 2.18 16 20 C -0.19 -3.76 9.79 -26.70 -0.26 -4.02 16 21 C -0.22 -4.33 10.14 -26.69 -0.27 -4.60 16 22 S 0.12 2.37 21.57 -107.50 -2.32 0.05 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.83 7.92 -51.93 -0.41 0.41 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.77 7.92 -51.93 -0.41 0.35 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.16 2.83 8.06 -52.49 -0.42 2.41 16 33 H 0.05 1.09 8.04 -51.92 -0.42 0.67 16 34 H 0.11 2.87 5.33 -51.93 -0.28 2.59 16 35 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 36 H 0.09 1.71 8.11 -51.93 -0.42 1.29 16 37 H 0.10 2.14 6.82 -51.93 -0.35 1.78 16 38 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 LS Contribution 340.39 15.07 5.13 5.13 Total: -1.00 -27.40 340.39 -9.62 -37.02 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.45 Total: 3.94 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -0.98 Total: -16.53 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.04 Total: -45.34 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -2.32 Total: 0.05 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.40 -9.62 -37.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271134157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.601 kcal (2) G-P(sol) polarization free energy of solvation -27.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.81 seconds