Wall clock time and date at job start Tue Mar 31 2020 02:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46508 * 109.47089 * 2 1 4 4 C 1.46500 * 120.00049 * 269.99869 * 3 2 1 5 5 C 1.50695 * 109.47321 * 270.00233 * 4 3 2 6 6 H 1.07996 * 120.00032 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00043 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00109 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00330 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46947 * 89.99427 * 9 7 5 11 11 H 1.48496 * 109.47227 * 210.00011 * 9 7 5 12 12 H 1.48503 * 109.47036 * 329.99887 * 9 7 5 13 13 C 1.34776 * 119.99581 * 90.00072 * 3 2 1 14 14 O 1.21597 * 119.99402 * 179.97438 * 13 3 2 15 15 N 1.34775 * 120.00393 * 0.02562 * 13 3 2 16 16 C 1.40075 * 119.99924 * 185.62813 * 15 13 3 17 17 C 1.38794 * 120.07898 * 24.77044 * 16 15 13 18 18 C 1.38152 * 119.95500 * 180.27181 * 17 16 15 19 19 C 1.38270 * 120.11106 * 359.45349 * 18 17 16 20 20 C 1.38272 * 120.15277 * 0.27539 * 19 18 17 21 21 C 1.50705 * 119.97831 * 179.97438 * 20 19 18 22 22 C 1.38307 * 120.04539 * 359.97438 * 20 19 18 23 23 F 1.35097 * 120.05788 * 180.02562 * 22 20 19 24 24 H 1.09001 * 109.47349 * 299.99994 * 1 2 3 25 25 H 1.08998 * 109.47522 * 60.00090 * 1 2 3 26 26 H 1.09006 * 109.47092 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47598 * 240.00463 * 2 1 3 28 28 H 1.08998 * 109.47522 * 119.99909 * 2 1 3 29 29 H 1.09000 * 109.46945 * 30.00650 * 4 3 2 30 30 H 1.09001 * 109.46688 * 150.00055 * 4 3 2 31 31 H 0.96998 * 120.00444 * 180.02562 * 8 7 5 32 32 H 0.96996 * 119.99716 * 5.62536 * 15 13 3 33 33 H 1.07999 * 120.02448 * 0.02562 * 17 16 15 34 34 H 1.08002 * 119.94385 * 179.72105 * 18 17 16 35 35 H 1.07996 * 119.92548 * 180.29103 * 19 18 17 36 36 H 1.08992 * 109.47315 * 89.99438 * 21 20 19 37 37 H 1.09001 * 109.47159 * 209.99815 * 21 20 19 38 38 H 1.09002 * 109.47160 * 329.99316 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2310 -1.0958 7 6 4.1493 2.3906 -2.8774 8 7 3.3493 3.1267 -3.6176 9 14 5.9137 2.0977 -3.4165 10 1 5.9775 0.8769 -4.2596 11 1 6.3926 3.2654 -4.1989 12 1 6.7736 1.9178 -2.2192 13 6 2.2429 2.0166 1.1672 14 8 2.6486 3.1628 1.1672 15 7 2.0188 1.3810 2.3344 16 6 2.1384 2.0762 3.5446 17 6 1.9745 3.4541 3.5745 18 6 2.0985 4.1378 4.7685 19 6 2.3746 3.4504 5.9360 20 6 2.5332 2.0770 5.9125 21 6 2.8346 1.3318 7.1872 22 6 2.4155 1.3867 4.7198 23 9 2.5699 0.0448 4.6966 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5816 1.6878 -2.0283 30 1 2.0955 3.1411 -1.1383 31 1 3.6753 3.5172 -4.4435 32 1 1.7746 0.4423 2.3364 33 1 1.7540 3.9919 2.6642 34 1 1.9754 5.2106 4.7908 35 1 2.4663 3.9874 6.8685 36 1 1.9006 1.0331 7.6630 37 1 3.4258 0.4451 6.9586 38 1 3.3956 1.9784 7.8621 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271984979.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:07 Heat of formation + Delta-G solvation = -64.913195 kcal Electronic energy + Delta-G solvation = -21931.906943 eV Core-core repulsion = 18495.276060 eV Total energy + Delta-G solvation = -3436.630884 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -49.93056 -41.76384 -39.76907 -37.21585 -36.15965 -34.83571 -33.17601 -31.70939 -30.78062 -28.79943 -27.81078 -25.30429 -24.50127 -23.29075 -22.93796 -20.69172 -19.62810 -18.60420 -18.33893 -18.12946 -17.27849 -16.83455 -16.77337 -16.36724 -15.95716 -15.49316 -15.21470 -14.73500 -14.54121 -14.46942 -14.20849 -14.10015 -13.78802 -13.36863 -13.23494 -13.18045 -13.05178 -12.75426 -12.57416 -12.54373 -12.36124 -12.23255 -11.96654 -11.77287 -11.51105 -10.92126 -10.64487 -9.63536 -9.59852 -9.00157 -8.23101 -6.37818 0.15146 0.24874 1.35485 1.38447 1.47752 1.57841 2.06498 2.37443 2.69992 2.87129 3.06699 3.18868 3.74244 3.95958 3.97144 4.21571 4.29131 4.31603 4.41331 4.47289 4.77574 4.79199 4.82936 4.88796 4.91121 4.97152 5.13357 5.18750 5.26171 5.29759 5.30651 5.48996 5.50076 5.56080 5.74061 5.96494 6.01199 6.04533 6.70078 6.92083 7.28361 7.51512 8.83520 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021102 B = 0.004524 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.579294 B = 6187.209664 C = 6566.343958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.610 5.610 4 C 0.279 3.721 5 C -0.545 4.545 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.925 5.925 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.696 3.304 14 O -0.611 6.611 15 N -0.676 5.676 16 C 0.130 3.870 17 C -0.141 4.141 18 C -0.098 4.098 19 C -0.112 4.112 20 C -0.096 4.096 21 C -0.109 4.109 22 C 0.039 3.961 23 F -0.142 7.142 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.099 0.901 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.031 0.969 30 H 0.002 0.998 31 H 0.268 0.732 32 H 0.416 0.584 33 H 0.125 0.875 34 H 0.153 0.847 35 H 0.170 0.830 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.284 -5.913 19.906 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.344 5.344 4 C 0.157 3.843 5 C -0.584 4.584 6 H 0.067 0.933 7 C -0.187 4.187 8 N -0.565 5.565 9 Si 0.791 3.209 10 H -0.187 1.187 11 H -0.204 1.204 12 H -0.202 1.202 13 C 0.398 3.602 14 O -0.491 6.491 15 N -0.325 5.325 16 C 0.033 3.967 17 C -0.162 4.162 18 C -0.117 4.117 19 C -0.131 4.131 20 C -0.098 4.098 21 C -0.165 4.165 22 C 0.017 3.983 23 F -0.121 7.121 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.117 0.883 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.049 0.951 30 H 0.020 0.980 31 H 0.077 0.923 32 H 0.255 0.745 33 H 0.143 0.857 34 H 0.171 0.829 35 H 0.187 0.813 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.033 -5.108 19.586 20.858 hybrid contribution 0.732 -0.574 -1.141 1.472 sum -4.301 -5.682 18.445 19.774 Atomic orbital electron populations 1.22153 0.94208 1.03719 1.01756 1.21718 0.95585 0.81428 1.03653 1.47536 1.66905 1.15170 1.04767 1.18697 0.95330 0.91508 0.78730 1.21693 0.97932 1.32182 1.06593 0.93298 1.25787 1.02230 0.94384 0.96329 1.70035 1.37688 1.34012 1.14768 0.85442 0.79113 0.78308 0.78078 1.18722 1.20426 1.20245 1.16029 0.78732 0.84505 0.80918 1.90821 1.53258 1.18763 1.86270 1.42600 1.72562 1.14551 1.02797 1.17876 1.01881 0.92944 0.84007 1.21384 1.02139 0.92228 1.00434 1.21406 0.97764 1.01450 0.91040 1.21266 1.00127 0.92185 0.99528 1.20142 1.00437 0.95161 0.94043 1.20792 1.03175 1.00049 0.92525 1.17326 1.09871 0.77330 0.93801 1.91414 1.93800 1.29635 1.97227 0.92971 0.93433 0.88279 0.89761 0.89767 0.95148 0.97951 0.92308 0.74516 0.85681 0.82933 0.81253 0.89281 0.91819 0.88582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.16 10.24 71.98 0.74 -3.42 16 2 C 0.10 3.15 5.94 86.38 0.51 3.66 16 3 N -0.61 -26.89 2.46 -844.20 -2.07 -28.96 16 4 C 0.28 15.18 5.16 85.63 0.44 15.62 16 5 C -0.55 -31.90 9.39 25.60 0.24 -31.66 16 6 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 7 C 0.01 0.70 5.46 84.65 0.46 1.16 16 8 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16 9 Si 0.97 45.47 29.54 68.60 2.03 47.49 16 10 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 13 C 0.70 31.34 8.08 179.05 1.45 32.79 16 14 O -0.61 -32.79 13.09 -4.02 -0.05 -32.84 16 15 N -0.68 -23.97 5.19 -316.99 -1.65 -25.61 16 16 C 0.13 4.36 6.44 38.15 0.25 4.61 16 17 C -0.14 -4.75 8.72 22.38 0.20 -4.56 16 18 C -0.10 -2.39 10.04 22.26 0.22 -2.17 16 19 C -0.11 -2.17 9.70 22.29 0.22 -1.95 16 20 C -0.10 -2.09 5.88 -19.84 -0.12 -2.21 16 21 C -0.11 -1.57 9.83 71.24 0.70 -0.87 16 22 C 0.04 1.09 7.25 22.48 0.16 1.26 16 23 F -0.14 -3.88 16.02 44.97 0.72 -3.16 16 24 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.08 2.77 8.07 -2.39 -0.02 2.75 16 28 H 0.08 2.21 6.29 -2.39 -0.02 2.20 16 29 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 30 H 0.00 0.15 7.42 -2.39 -0.02 0.13 16 31 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 32 H 0.42 12.20 6.14 -92.71 -0.57 11.63 16 33 H 0.13 5.08 5.79 -2.91 -0.02 5.06 16 34 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 35 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.01 7.64 -2.39 -0.02 0.99 16 38 H 0.10 0.95 8.09 -2.39 -0.02 0.93 16 Total: -1.00 -74.12 325.33 5.24 -68.89 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.51 Total: 17.58 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 5.47 Total: 12.26 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -3.43 Total: -110.23 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -0.05 Total: -32.84 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.72 Total: -3.16 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -74.12 5.24 -68.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271984979.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.975 kcal (2) G-P(sol) polarization free energy of solvation -74.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds