Wall clock time and date at job start Tue Mar 31 2020 02:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99931 * 2 1 4 4 C 1.50699 * 109.47350 * 269.99854 * 3 2 1 5 5 C 1.38262 * 119.99087 * 269.72479 * 4 3 2 6 6 C 1.38218 * 120.05237 * 179.72576 * 5 4 3 7 7 C 1.38218 * 120.02685 * 0.55251 * 6 5 4 8 8 C 1.38442 * 119.97390 * 359.71991 * 7 6 5 9 9 F 1.35099 * 120.02835 * 180.02562 * 8 7 6 10 10 C 1.38176 * 119.98384 * 90.00466 * 4 3 2 11 11 C 1.34773 * 120.00095 * 180.02562 * 2 1 3 12 12 O 1.21588 * 120.00151 * 179.72667 * 11 2 1 13 13 N 1.34784 * 119.99935 * 359.97438 * 11 2 1 14 14 C 1.46499 * 119.99893 * 179.72905 * 13 11 2 15 15 C 1.53003 * 109.46708 * 180.02562 * 14 13 11 16 16 C 1.50708 * 109.46949 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99690 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00050 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99915 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00185 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47025 * 90.00093 * 20 18 16 22 22 H 1.48496 * 109.47352 * 210.00804 * 20 18 16 23 23 H 1.48511 * 109.46991 * 330.00706 * 20 18 16 24 24 H 1.09000 * 109.47191 * 269.99858 * 1 2 3 25 25 H 1.09004 * 109.46976 * 30.00047 * 1 2 3 26 26 H 1.08998 * 109.47074 * 149.99450 * 1 2 3 27 27 H 1.09003 * 109.47023 * 30.00279 * 3 2 1 28 28 H 1.09002 * 109.46896 * 149.99872 * 3 2 1 29 29 H 1.08007 * 119.97159 * 359.97438 * 5 4 3 30 30 H 1.08000 * 119.98672 * 180.28017 * 6 5 4 31 31 H 1.08002 * 120.01737 * 179.75364 * 7 6 5 32 32 H 1.08001 * 120.01798 * 359.97390 * 10 4 3 33 33 H 0.97005 * 119.99846 * 359.72693 * 13 11 2 34 34 H 1.08998 * 109.47134 * 299.99552 * 14 13 11 35 35 H 1.08994 * 109.47397 * 59.99843 * 14 13 11 36 36 H 1.09000 * 109.47195 * 299.99415 * 15 14 13 37 37 H 1.08994 * 109.47584 * 59.99634 * 15 14 13 38 38 H 0.97000 * 120.00246 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 6 3.6037 1.3093 -2.0704 6 6 3.8327 1.7029 -3.3754 7 6 2.9126 2.5009 -4.0288 8 6 1.7584 2.9012 -3.3775 9 9 0.8580 3.6809 -4.0152 10 6 1.5274 2.5016 -2.0718 11 6 2.1389 -1.1672 -0.0005 12 8 3.3548 -1.1672 -0.0055 13 7 1.4650 -2.3344 -0.0005 14 6 2.1975 -3.6031 -0.0071 15 6 1.2032 -4.7660 -0.0063 16 6 1.9567 -6.0712 -0.0137 17 1 3.0367 -6.0711 -0.0189 18 6 1.2673 -7.2652 -0.0138 19 7 -0.0478 -7.2652 -0.0080 20 14 2.2012 -8.8829 -0.0237 21 1 2.4560 -9.3159 1.3738 22 1 1.3951 -9.9156 -0.7229 23 1 3.4953 -8.7031 -0.7298 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1383 0.5139 29 1 4.3256 0.6897 -1.5590 30 1 4.7331 1.3903 -3.8834 31 1 3.0936 2.8117 -5.0472 32 1 0.6272 2.8131 -1.5629 33 1 0.4950 -2.3344 0.0039 34 1 2.8201 -3.6586 -0.9000 35 1 2.8282 -3.6632 0.8798 36 1 0.5803 -4.7108 0.8865 37 1 0.5729 -4.7058 -0.8934 38 1 -0.5329 -8.1052 -0.0084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273090456.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:24 Heat of formation + Delta-G solvation = -53.724668 kcal Electronic energy + Delta-G solvation = -21062.513804 eV Core-core repulsion = 17626.368091 eV Total energy + Delta-G solvation = -3436.145713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.05130 -40.14173 -38.91500 -35.65043 -34.81156 -32.94606 -31.87776 -30.67557 -29.46404 -27.47383 -25.97751 -24.31504 -22.89093 -21.93450 -20.96847 -19.69255 -17.85402 -17.51200 -16.50595 -16.36801 -16.29874 -16.01342 -15.68896 -15.54176 -14.52229 -14.25699 -14.05180 -13.90360 -13.68848 -13.31807 -13.11431 -12.74622 -12.60976 -12.34564 -12.23841 -11.98748 -11.67145 -11.30077 -11.15155 -11.03082 -10.63000 -10.32259 -9.94183 -9.57550 -9.29103 -9.17759 -8.84447 -8.76186 -8.47123 -8.22809 -6.09222 -4.11864 0.94597 1.04029 2.87514 3.29708 3.35841 3.40119 3.48968 3.55955 4.04976 4.29159 4.45351 4.50488 4.59954 4.83893 5.02934 5.06064 5.11367 5.21396 5.27962 5.38284 5.55728 5.61604 5.68033 5.89539 5.92614 6.18591 6.22024 6.37983 6.39546 6.51713 6.73963 6.76997 6.99330 7.11681 7.55312 7.62965 7.89800 8.23778 8.35635 8.91322 8.96744 9.52914 11.02479 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026332 B = 0.003112 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.074933 B = 8995.669914 C = 9143.164456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.635 5.635 3 C 0.173 3.827 4 C -0.077 4.077 5 C -0.100 4.100 6 C -0.094 4.094 7 C -0.153 4.153 8 C 0.089 3.911 9 F -0.143 7.143 10 C -0.142 4.142 11 C 0.701 3.299 12 O -0.594 6.594 13 N -0.737 5.737 14 C 0.139 3.861 15 C 0.013 3.987 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.139 0.861 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.393 0.607 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.022 0.978 37 H 0.021 0.979 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.176 21.389 -3.393 21.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.373 5.373 3 C 0.050 3.950 4 C -0.079 4.079 5 C -0.119 4.119 6 C -0.112 4.112 7 C -0.172 4.172 8 C 0.070 3.930 9 F -0.122 7.122 10 C -0.162 4.162 11 C 0.403 3.597 12 O -0.472 6.472 13 N -0.392 5.392 14 C 0.017 3.983 15 C -0.025 4.025 16 C -0.559 4.559 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.157 0.843 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.228 0.772 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.876 21.238 -3.398 21.590 hybrid contribution -0.432 -0.801 -0.278 0.951 sum 1.444 20.438 -3.676 20.816 Atomic orbital electron populations 1.21731 0.79923 1.03068 1.01737 1.47036 1.06162 1.04599 1.79509 1.20156 0.98804 0.84478 0.91588 1.20225 0.93926 0.96089 0.97614 1.21387 0.97520 0.98349 0.94656 1.21079 0.98980 0.96442 0.94705 1.21166 0.94023 1.01002 1.01050 1.17667 0.88777 0.94889 0.91669 1.91488 1.66409 1.72466 1.81845 1.21012 1.00810 1.00820 0.93534 1.15995 0.85439 0.80409 0.77896 1.90853 1.11560 1.86268 1.58569 1.45693 1.10017 1.05320 1.78140 1.21596 0.95659 0.80445 1.00630 1.19323 0.94261 0.91118 0.97757 1.21050 0.93269 0.90344 1.51252 0.92211 1.24995 0.94894 0.99409 0.95006 1.69956 1.06093 1.26857 1.50451 0.86510 0.79843 0.82990 0.78195 1.20563 1.21188 1.19706 0.92478 0.91219 0.91131 0.89688 0.88460 0.84330 0.84964 0.84978 0.85003 0.77183 0.92809 0.92737 0.96002 0.96037 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.20 59.85 0.61 1.37 16 2 N -0.64 -8.16 2.86 -188.74 -0.54 -8.70 16 3 C 0.17 1.86 5.53 -5.20 -0.03 1.84 16 4 C -0.08 -0.86 5.46 -104.64 -0.57 -1.43 16 5 C -0.10 -1.19 9.70 -39.58 -0.38 -1.58 16 6 C -0.09 -0.98 10.04 -39.60 -0.40 -1.37 16 7 C -0.15 -1.56 10.03 -39.51 -0.40 -1.96 16 8 C 0.09 0.98 7.30 -39.42 -0.29 0.69 16 9 F -0.14 -1.64 17.27 2.25 0.04 -1.60 16 10 C -0.14 -1.46 9.68 -39.51 -0.38 -1.84 16 11 C 0.70 12.13 8.28 -86.91 -0.72 11.41 16 12 O -0.59 -12.05 15.46 5.29 0.08 -11.97 16 13 N -0.74 -13.18 5.42 -65.23 -0.35 -13.53 16 14 C 0.14 3.00 5.61 -4.04 -0.02 2.97 16 15 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 16 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 20 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 26 H 0.07 0.71 6.37 -51.93 -0.33 0.38 16 27 H 0.08 0.66 8.02 -51.93 -0.42 0.24 16 28 H 0.10 1.15 7.37 -51.93 -0.38 0.77 16 29 H 0.14 1.80 7.59 -52.48 -0.40 1.40 16 30 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.39 6.18 6.21 -40.82 -0.25 5.93 16 34 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 331.18 15.07 4.99 4.99 Total: -1.00 -32.10 331.18 -8.32 -40.43 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.12 Total: 2.34 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -3.13 Total: -2.93 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: -0.16 Total: -47.59 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.08 Total: -11.97 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.10 -8.32 -40.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273090456.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.298 kcal (2) G-P(sol) polarization free energy of solvation -32.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds