Wall clock time and date at job start Tue Mar 31 2020 02:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99931 * 2 1 4 4 C 1.50699 * 109.47350 * 269.99854 * 3 2 1 5 5 C 1.38262 * 119.99087 * 269.72479 * 4 3 2 6 6 C 1.38218 * 120.05237 * 179.72576 * 5 4 3 7 7 C 1.38218 * 120.02685 * 0.55251 * 6 5 4 8 8 C 1.38442 * 119.97390 * 359.71991 * 7 6 5 9 9 F 1.35099 * 120.02835 * 180.02562 * 8 7 6 10 10 C 1.38176 * 119.98384 * 90.00466 * 4 3 2 11 11 C 1.34773 * 120.00095 * 180.02562 * 2 1 3 12 12 O 1.21588 * 120.00151 * 179.72667 * 11 2 1 13 13 N 1.34784 * 119.99935 * 359.97438 * 11 2 1 14 14 C 1.46499 * 119.99893 * 179.72905 * 13 11 2 15 15 C 1.53003 * 109.46708 * 180.02562 * 14 13 11 16 16 C 1.50708 * 109.46949 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99690 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00050 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99915 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00185 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47025 * 90.00093 * 20 18 16 22 22 H 1.48496 * 109.47352 * 210.00804 * 20 18 16 23 23 H 1.48511 * 109.46991 * 330.00706 * 20 18 16 24 24 H 1.09000 * 109.47191 * 269.99858 * 1 2 3 25 25 H 1.09004 * 109.46976 * 30.00047 * 1 2 3 26 26 H 1.08998 * 109.47074 * 149.99450 * 1 2 3 27 27 H 1.09003 * 109.47023 * 30.00279 * 3 2 1 28 28 H 1.09002 * 109.46896 * 149.99872 * 3 2 1 29 29 H 1.08007 * 119.97159 * 359.97438 * 5 4 3 30 30 H 1.08000 * 119.98672 * 180.28017 * 6 5 4 31 31 H 1.08002 * 120.01737 * 179.75364 * 7 6 5 32 32 H 1.08001 * 120.01798 * 359.97390 * 10 4 3 33 33 H 0.97005 * 119.99846 * 359.72693 * 13 11 2 34 34 H 1.08998 * 109.47134 * 299.99552 * 14 13 11 35 35 H 1.08994 * 109.47397 * 59.99843 * 14 13 11 36 36 H 1.09000 * 109.47195 * 299.99415 * 15 14 13 37 37 H 1.08994 * 109.47584 * 59.99634 * 15 14 13 38 38 H 0.97000 * 120.00246 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 6 3.6037 1.3093 -2.0704 6 6 3.8327 1.7029 -3.3754 7 6 2.9126 2.5009 -4.0288 8 6 1.7584 2.9012 -3.3775 9 9 0.8580 3.6809 -4.0152 10 6 1.5274 2.5016 -2.0718 11 6 2.1389 -1.1672 -0.0005 12 8 3.3548 -1.1672 -0.0055 13 7 1.4650 -2.3344 -0.0005 14 6 2.1975 -3.6031 -0.0071 15 6 1.2032 -4.7660 -0.0063 16 6 1.9567 -6.0712 -0.0137 17 1 3.0367 -6.0711 -0.0189 18 6 1.2673 -7.2652 -0.0138 19 7 -0.0478 -7.2652 -0.0080 20 14 2.2012 -8.8829 -0.0237 21 1 2.4560 -9.3159 1.3738 22 1 1.3951 -9.9156 -0.7229 23 1 3.4953 -8.7031 -0.7298 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1383 0.5139 29 1 4.3256 0.6897 -1.5590 30 1 4.7331 1.3903 -3.8834 31 1 3.0936 2.8117 -5.0472 32 1 0.6272 2.8131 -1.5629 33 1 0.4950 -2.3344 0.0039 34 1 2.8201 -3.6586 -0.9000 35 1 2.8282 -3.6632 0.8798 36 1 0.5803 -4.7108 0.8865 37 1 0.5729 -4.7058 -0.8934 38 1 -0.5329 -8.1052 -0.0084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273090456.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:23 Heat of formation + Delta-G solvation = -72.562923 kcal Electronic energy + Delta-G solvation = -21063.330692 eV Core-core repulsion = 17626.368091 eV Total energy + Delta-G solvation = -3436.962601 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.89906 -41.32398 -39.88554 -36.91130 -36.36571 -34.84296 -32.92822 -31.54163 -31.18892 -28.33323 -27.34152 -25.94261 -23.71423 -23.14202 -22.55509 -20.99446 -19.07635 -18.49973 -18.34807 -17.33107 -17.22366 -17.12262 -16.77952 -16.57693 -16.48282 -15.53831 -15.33169 -15.03112 -14.85615 -14.30224 -14.27951 -14.24454 -13.80535 -13.46219 -13.17680 -13.12922 -12.93038 -12.81154 -12.54844 -12.49010 -12.23454 -12.06611 -11.64458 -11.46671 -11.14914 -10.59665 -10.13208 -10.01047 -9.70044 -9.50386 -8.23444 -6.33724 0.10662 0.21568 1.42587 1.43144 1.54511 1.75198 2.16714 2.41297 2.64418 3.11430 3.12923 3.23504 3.70936 3.80076 4.09099 4.21889 4.24861 4.29675 4.41260 4.50618 4.52870 4.63093 4.77287 4.87009 4.88067 4.89828 5.06510 5.11328 5.29907 5.35845 5.46121 5.53194 5.58471 5.59658 5.79489 5.92133 5.94372 6.17757 6.79387 7.00480 7.35631 7.58900 8.88531 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026332 B = 0.003112 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.074933 B = 8995.669914 C = 9143.164456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.626 5.626 3 C 0.171 3.829 4 C -0.084 4.084 5 C -0.120 4.120 6 C -0.098 4.098 7 C -0.154 4.154 8 C 0.076 3.924 9 F -0.147 7.147 10 C -0.136 4.136 11 C 0.696 3.304 12 O -0.629 6.629 13 N -0.736 5.736 14 C 0.161 3.839 15 C 0.025 3.975 16 C -0.546 4.546 17 H 0.059 0.941 18 C 0.007 3.993 19 N -0.927 5.927 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.266 1.266 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.064 0.936 27 H 0.124 0.876 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.157 0.843 33 H 0.404 0.596 34 H 0.041 0.959 35 H 0.044 0.956 36 H 0.008 0.992 37 H 0.006 0.994 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.675 22.285 -3.560 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.363 5.363 3 C 0.049 3.951 4 C -0.086 4.086 5 C -0.138 4.138 6 C -0.116 4.116 7 C -0.173 4.173 8 C 0.057 3.943 9 F -0.125 7.125 10 C -0.155 4.155 11 C 0.398 3.602 12 O -0.511 6.511 13 N -0.392 5.392 14 C 0.037 3.963 15 C -0.013 4.013 16 C -0.585 4.585 17 H 0.077 0.923 18 C -0.191 4.191 19 N -0.566 5.566 20 Si 0.790 3.210 21 H -0.197 1.197 22 H -0.205 1.205 23 H -0.191 1.191 24 H 0.093 0.907 25 H 0.116 0.884 26 H 0.082 0.918 27 H 0.142 0.858 28 H 0.100 0.900 29 H 0.137 0.863 30 H 0.167 0.833 31 H 0.169 0.831 32 H 0.175 0.825 33 H 0.241 0.759 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.027 0.973 37 H 0.025 0.975 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.339 22.187 -3.563 22.511 hybrid contribution -0.301 -0.988 -0.248 1.062 sum 1.037 21.199 -3.811 21.564 Atomic orbital electron populations 1.22002 0.77582 1.04210 1.03278 1.47082 1.07607 1.03679 1.77884 1.20359 0.98794 0.84189 0.91783 1.20239 0.93969 0.96596 0.97759 1.21418 0.97939 0.98951 0.95542 1.21269 0.99768 0.96302 0.94248 1.21409 0.93578 1.00351 1.01914 1.17880 0.89052 0.95208 0.92185 1.91482 1.66520 1.72588 1.81941 1.21192 1.01214 0.99859 0.93262 1.16152 0.85108 0.81241 0.77732 1.90829 1.13255 1.86947 1.60045 1.45408 1.10425 1.04592 1.78744 1.21048 0.94576 0.81172 0.99503 1.19118 0.94227 0.91739 0.96214 1.21464 0.93612 0.91885 1.51502 0.92275 1.25866 0.95798 1.03074 0.94405 1.70058 1.07533 1.27989 1.51036 0.85445 0.78628 0.78436 0.78541 1.19726 1.20536 1.19055 0.90718 0.88351 0.91760 0.85764 0.90044 0.86283 0.83341 0.83092 0.82527 0.75886 0.94049 0.93746 0.97334 0.97532 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 10.20 127.77 1.30 2.48 16 2 N -0.63 -15.11 2.86 -869.30 -2.48 -17.60 16 3 C 0.17 3.39 5.53 85.63 0.47 3.87 16 4 C -0.08 -1.76 5.46 -19.87 -0.11 -1.87 16 5 C -0.12 -2.83 9.70 22.27 0.22 -2.62 16 6 C -0.10 -1.96 10.04 22.26 0.22 -1.74 16 7 C -0.15 -2.89 10.03 22.31 0.22 -2.67 16 8 C 0.08 1.52 7.30 22.38 0.16 1.68 16 9 F -0.15 -3.06 17.27 44.97 0.78 -2.28 16 10 C -0.14 -2.46 9.68 22.31 0.22 -2.25 16 11 C 0.70 23.98 8.28 179.05 1.48 25.47 16 12 O -0.63 -26.05 15.46 -3.99 -0.06 -26.12 16 13 N -0.74 -26.37 5.42 -478.53 -2.59 -28.97 16 14 C 0.16 7.08 5.61 86.38 0.48 7.57 16 15 C 0.02 1.25 5.09 29.85 0.15 1.40 16 16 C -0.55 -30.64 9.11 25.60 0.23 -30.41 16 17 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 18 C 0.01 0.41 5.46 84.65 0.46 0.87 16 19 N -0.93 -54.29 13.29 21.45 0.28 -54.00 16 20 Si 0.97 43.61 29.54 68.60 2.03 45.64 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 24 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.10 1.09 8.07 -2.38 -0.02 1.07 16 26 H 0.06 1.16 6.37 -2.39 -0.02 1.15 16 27 H 0.12 1.48 8.02 -2.39 -0.02 1.47 16 28 H 0.08 1.90 7.37 -2.39 -0.02 1.88 16 29 H 0.12 3.26 7.59 -2.91 -0.02 3.24 16 30 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 31 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 32 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 33 H 0.40 12.57 6.21 -92.70 -0.58 12.00 16 34 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.04 2.02 8.14 -2.39 -0.02 2.01 16 36 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -69.31 331.18 3.97 -65.35 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.49 Total: 16.19 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 5.53 Total: 1.79 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -4.79 Total: -100.57 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.06 Total: -26.12 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -69.31 3.97 -65.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273090456.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.214 kcal (2) G-P(sol) polarization free energy of solvation -69.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds